Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002858

Physical Location & Seq

Genomic Coordinates Reverse (-)

31303517 .. 31304440

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAAAATGGGAACGATCGGCCGTGCATCGCCGGAAAAGTCGTTTCCGCCGGTCCGATCGGAGGGAACTGGAGCGCCTTCGATCCGGCTACGCGGCGGCGGCGGGGCAAGGCAACACCACGGGGAGCTTGGGCGGGGCTGTGCGAATCCGGAGGGGCGGGTCGGTGCGGAGGAGGCGGAGGAGGGAGAAAAACCGGGACCGTTAGCGGATGCAAGACCCACTGCTGCAGATGCACCGAGCAAGATTATCCAAATGGGATTTATGTTTGATTTTGTTGAGAATGAAGTTGATTTTTTGCCGATGAAAGAAAATGCGGAGTTATATATGGAGGATGAGCGGTTTCTTGATTCGCTTTCGTCTCATCGGAAAAACTGGTCTTGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.9

Weight (kDa)

5.24

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002858)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13480
pyrus_communis	pycom08g06270
rosa_chinensis	RchiOBHm_Chr2g0086071 RchiOBHm_Chr2g0086081 RchiOBHm_Chr2g0086101 RchiOBHm_Chr2g0122661
rosa_laevigata	RLG00000015740 RLG00000015743 RLG00000018698 RLG00000018704
rosa_multiflora	Rmu_sc0003133.1_g000025 Rmu_sc0006012.1_g000008 Rmu_sc0017765.1_g000003 Rmu_sc0020050.1_g000004 Rmu_ssc0000041.1_g000003 Rmu_ssc0000355.1_g000017
rosa_roxburghii	Rroxscaffold_2G00106820 Rroxscaffold_2G00121390 Rroxscaffold_2G00154810 Rroxscaffold_6G00408820
rosa_rugosa	Rorug01G0465700 Rorug01G0465700 Rorug02G0241200
rosa_samantha	Rh2AG014900 Rh2AG015300 Rh2AG298900 Rh2BG015400 Rh2BG307800 Rh2CG015900 Rh2CG016300 Rh2CG285900 Rh2DG017200 Rh2DG017400 Rh4BG170400 Rh6CG207900 Rh6DG198200
rosa_wichuraiana	Rw2G001310 Rw2G001330 Rw2G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	337
AccII	CGCG	1 cut(s)	93
AccIII	TCCGGA	1 cut(s)	148
AclWI	GGATC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	61
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	76
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	2 cut(s)	52, 197
AsuC2I	CCSGG	1 cut(s)	195
AvaII	GGWCC	2 cut(s)	52, 197
BbvI	GCAGC	1 cut(s)	211
BceAI	ACGGC	1 cut(s)	6
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	77
BisI	GCNGC	4 cut(s)	94, 97, 100, 225
BlsI	GCNGC	4 cut(s)	95, 98, 101, 226
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	2 cut(s)	52, 197
BmgT120I	GGNCC	2 cut(s)	52, 197
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	3 cut(s)	35, 199, 220
BpmI	CTGGAG	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	73, 377
BseAI	TCCGGA	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	214, 337
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseNI	ACTGG	2 cut(s)	73, 377
BseRI	GAGGAG	2 cut(s)	185, 194
BseX3I	CGGCCG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	93
Bsh1285I	CGRYCG	3 cut(s)	18, 22, 59
BshFI	GGCC	1 cut(s)	21
BsiEI	CGRYCG	3 cut(s)	18, 22, 59
BsiSI	CCGG	5 cut(s)	32, 50, 85, 149, 194
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	363
BsmBI	CGTCTC	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	21
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	15, 56, 81
BspANI	GGCC	1 cut(s)	21
BspEI	TCCGGA	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	229
BspPI	GGATC	1 cut(s)	76
BsrBI	CCGCTC	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	73, 377
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	3 cut(s)	15, 56, 81
Bst4CI	ACNGT	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	214, 337
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	3 cut(s)	18, 59, 84
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	3 cut(s)	15, 56, 81
BstMCI	CGRYCG	3 cut(s)	18, 22, 59
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 173, 230
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	225
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	211
BstZI	CGGCCG	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	214, 337
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	52, 197
CpoI	CGGWCCG	1 cut(s)	52
CspI	CGGWCCG	1 cut(s)	52
CviJI	RGCY	4 cut(s)	21, 88, 127, 138
CviKI_1	RGCY	4 cut(s)	21, 88, 127, 138
DpnI	GATC	3 cut(s)	17, 58, 83
DpnII	GATC	3 cut(s)	15, 56, 81
EaeI	YGGCCR	1 cut(s)	19
EagI	CGGCCG	1 cut(s)	19
EciI	GGCGGA	2 cut(s)	36, 191
EclXI	CGGCCG	1 cut(s)	19
Eco47I	GGWCC	2 cut(s)	52, 197
Eco52I	CGGCCG	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	363
FaiI	YATR	5 cut(s)	263, 322, 324, 326, 385
FaqI	GGGAC	1 cut(s)	210
FauI	CCCGC	3 cut(s)	95, 126, 150
Fnu4HI	GCNGC	4 cut(s)	94, 97, 100, 225
FokI	GGATG	2 cut(s)	221, 344
Fsp4HI	GCNGC	4 cut(s)	94, 97, 100, 225
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	4 cut(s)	94, 97, 100, 225
GsuI	CTGGAG	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	5 cut(s)	32, 50, 85, 149, 194
HhaI	GCGC	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	2 cut(s)	145, 347
HpaII	CCGG	5 cut(s)	32, 50, 85, 149, 194
Hpy188I	TCNGA	3 cut(s)	56, 61, 366
Hpy188III	TCNNGA	2 cut(s)	149, 344
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4V	TGCA	4 cut(s)	26, 212, 227, 233
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 173, 230
HspAI	GCGC	1 cut(s)	74
Kpn2I	TCCGGA	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	15, 56, 81
LmnI	GCTCC	2 cut(s)	71, 124
LpnPI	CCDG	7 cut(s)	45, 54, 63, 98, 162, 207, 358
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	3 cut(s)	35, 199, 220
MalI	GATC	3 cut(s)	17, 58, 83
MbiI	CCGCTC	1 cut(s)	337
MboI	GATC	3 cut(s)	15, 56, 81
MnlI	CCTC	7 cut(s)	55, 145, 163, 166, 172, 175, 322
MroI	TCCGGA	1 cut(s)	148
MspI	CCGG	5 cut(s)	32, 50, 85, 149, 194
MspR9I	CCNGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	3 cut(s)	99, 173, 230
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	3 cut(s)	15, 56, 81
NlaIV	GGNNCC	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	145, 347
PkrI	GCNGC	4 cut(s)	95, 98, 101, 226
Ple19I	CGATCG	2 cut(s)	18, 59
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	2 cut(s)	52, 197
PstI	CTGCAG	1 cut(s)	229
PvuI	CGATCG	2 cut(s)	18, 59
Rsr2I	CGGWCCG	1 cut(s)	52
RsrII	CGGWCCG	1 cut(s)	52
SatI	GCNGC	4 cut(s)	94, 97, 100, 225
Sau3AI	GATC	3 cut(s)	15, 56, 81
Sau96I	GGNCC	2 cut(s)	52, 197
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	1 cut(s)	129
SfaNI	GCATC	3 cut(s)	35, 199, 220
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	2 cut(s)	52, 197
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	80
TauI	GCSGC	3 cut(s)	96, 99, 102
TfiI	GAWTC	2 cut(s)	145, 347
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	3 cut(s)	17, 297, 317
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	2 cut(s)	52, 197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.