Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002858

Physical Location & Seq

Genomic Coordinates Reverse (-)

1088187 .. 1090418

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G001310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGAAGGTGCGTCAAGTTCTGATTGGACCCAGAAGGAAGAAGCTGCTAAGCTTCACATAGAAGAAATTCGGACCCAGAAATATTCTATTGGTAAAGACGAAGTTAACCCCTTGGGCAAAGATCTTCATCGAGCCCTGATAACCAACATCTCAAAAGGTGCCAACTTTTTGAGGGAACTCATCCTGAACGCAGAAGAGAATGAATATGAAGAAGGTGTAGTGCCAGAGATGAAATTTGTGTTGACCAAGGAAGACATAACTGAGACTGGAGCACCAGCTACTCTGTTGGTTTTCAATAATGAAGTTGGCTTTTCCAGGGAGAACATGGATTCCATTTGCCGCATATTCCATTCTACAAAGATGGAAAAGAGACAGCAGAGGTTAATTGAAGAGAATGGAAGCGGATTCAAAAGTGTATTTCTTGTGAGTTCACAGCCTTACATTTTCAGCAATGGATATCGTGTTAGATTCCAGGAAGAACCAGATCAAGATTGTCGTATTGGGTATATAGTTCCCCAGTGGGTGAGTGGACATCCTTCTATTTCTAGCATATATGATGTGTATGGGCTCAGTAATGCCTACCCTGCAACCACAGTTATCCTTCGTCTAAAGCCTGAGATGGCTGAAGCCGTGAGAGAGCTATTGTCACAGTTGTGCCCAGAGATTATCCTGTTCTTATCGAAGTTAAAGCAACTATCTGTATGTGACTATGATTCTGAAGTAGCTGATAGGGTTTCAAGCTTTCTTATATCTAGTGTGACTAAAAACAAGGAGGTTTCTTCACGTGTGGTTCAACTTTCAAAGAAAAACTTGGATGATACTGAGGAATTATGCGATTATTACTTGTGGGAAAAGGAATTTCCAGTAAAACCTGAGAATAGATTTGGTGTAAGGATGGATGTGCAGAGCTGGGTGATTACCATTGCTTTCCCATCTGGAGAATGGATGAGAAATGCAACTTCTTCTGTTGGTATATTCGCTTTCCTCCCCACGACAATGGTCACAGACTTCCCGTTTTTAATTCAAGCTGACTTCATTCTTAATTCATCACGAGATTCTATACTGTTGGAAAATGTATGGAACTTGGGGATTCTCAATTGTATCCCATCAGCATTTGTGAATGCCTTTCAGTCTCACTCCTTGTGTTATCCAATGGGTAAGATTTTTGAATTTTTACCTGCTCAAGCTTCATCAATTCCCAAGTTTAAAGACTTAAGAGAGTCCATTAGAGCTGAATTGCAGAGTCTAGTGATAGTGCCTTGTGATGTTATTGAGGGTATGTCTTCCTCTGCAAGGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

433

Amino Acids

49.03

Weight (kDa)

5.01

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002858)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13480
pyrus_communis	pycom08g06270
rosa_chinensis	RchiOBHm_Chr2g0086071 RchiOBHm_Chr2g0086081 RchiOBHm_Chr2g0086101 RchiOBHm_Chr2g0122661
rosa_laevigata	RLG00000015740 RLG00000015743 RLG00000018698 RLG00000018704
rosa_multiflora	Rmu_sc0003133.1_g000025 Rmu_sc0006012.1_g000008 Rmu_sc0017765.1_g000003 Rmu_sc0020050.1_g000004 Rmu_ssc0000041.1_g000003 Rmu_ssc0000355.1_g000017
rosa_roxburghii	Rroxscaffold_2G00106820 Rroxscaffold_2G00121390 Rroxscaffold_2G00154810 Rroxscaffold_6G00408820
rosa_rugosa	Rorug01G0465700 Rorug01G0465700 Rorug02G0241200
rosa_samantha	Rh2AG014900 Rh2AG015300 Rh2AG298900 Rh2BG015400 Rh2BG307800 Rh2CG015900 Rh2CG016300 Rh2CG285900 Rh2DG017200 Rh2DG017400 Rh4BG170400 Rh6CG207900 Rh6DG198200
rosa_wichuraiana	Rw2G001310 Rw2G001330 Rw2G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1186
AccB1I	GGYRCC	1 cut(s)	158
AciI	CCGC	2 cut(s)	340, 402
AcsI	RAATTY	4 cut(s)	66, 233, 857, 1169
AcuI	CTGAAG	2 cut(s)	645, 738
AcvI	CACGTG	1 cut(s)	785
AfiI	CCNNNNNNNGG	1 cut(s)	1293
AflII	CTTAAG	1 cut(s)	1213
AflIII	ACRYGT	1 cut(s)	784
AgsI	TTSAA	8 cut(s)	295, 389, 409, 738, 794, 801, 1025, 1169
AjnI	CCWGG	2 cut(s)	314, 471
AleI	CACNNNNGTG	1 cut(s)	652
AloI	GAACNNNNNNTCC	2 cut(s)	314, 346
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	3 cut(s)	257, 364, 1137
AoxI	GGCC	1 cut(s)	1295
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	4 cut(s)	66, 233, 857, 1169
Asp700I	GAANNNNTTC	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	27, 72
AsuHPI	GGTGA	2 cut(s)	535, 925
AvaII	GGWCC	2 cut(s)	27, 72
BaeGI	GKGCMC	1 cut(s)	659
BanI	GGYRCC	1 cut(s)	158
BanII	GRGCYC	2 cut(s)	136, 570
BauI	CACGAG	1 cut(s)	1050
BbrPI	CACGTG	1 cut(s)	785
BbsI	GAAGAC	2 cut(s)	258, 1275
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	5 cut(s)	355, 613, 889, 940, 1114
BceAI	ACGGC	1 cut(s)	614
BciT130I	CCWGG	2 cut(s)	316, 473
BciVI	GTATCC	1 cut(s)	1112
BcoDI	GTCTC	3 cut(s)	257, 364, 1137
BfaI	CTAG	3 cut(s)	546, 753, 1247
BfrI	CTTAAG	1 cut(s)	1213
BfuAI	ACCTGC	1 cut(s)	1186
BfuI	GTATCC	1 cut(s)	1112
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	2 cut(s)	45, 340
BlpI	GCTNAGC	1 cut(s)	48
BlsI	GCNGC	2 cut(s)	46, 341
Bme1390I	CCNGG	2 cut(s)	316, 473
Bme18I	GGWCC	2 cut(s)	27, 72
BmgT120I	GGNCC	2 cut(s)	27, 72
BmiI	GGNNCC	3 cut(s)	29, 74, 160
BmrFI	CCNGG	2 cut(s)	316, 473
BmrI	ACTGGG	1 cut(s)	511
BmuI	ACTGGG	1 cut(s)	511
BoxI	GACNNNNGTC	1 cut(s)	998
BpiI	GAAGAC	2 cut(s)	258, 1275
BpmI	CTGGAG	2 cut(s)	288, 957
Bpu1102I	GCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	1167
BsaAI	YACGTR	1 cut(s)	785
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	111, 246, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	1293
Bse1I	ACTGG	3 cut(s)	271, 517, 863
Bse3DI	GCAATG	2 cut(s)	457, 921
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	316, 473
BseDI	CCNNGG	3 cut(s)	111, 246, 315
BseGI	GGATG	6 cut(s)	180, 532, 820, 900, 904, 951
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	1293
BseMI	GCAATG	2 cut(s)	457, 921
BseMII	CTCAG	5 cut(s)	252, 583, 606, 813, 864
BseNI	ACTGG	3 cut(s)	271, 517, 863
BseSI	GKGCMC	1 cut(s)	659
BseXI	GCAGC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	909
BsgI	GTGCAG	1 cut(s)	923
BshFI	GGCC	1 cut(s)	1297
BshNI	GGYRCC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	1293
BsmAI	GTCTC	3 cut(s)	257, 364, 1137
BsmI	GAATGC	1 cut(s)	1126
BsnI	GGCC	1 cut(s)	1297
Bsp1286I	GDGCHC	4 cut(s)	136, 274, 570, 659
Bsp143I	GATC	2 cut(s)	121, 484
Bsp1720I	GCTNAGC	1 cut(s)	48
BspACI	CCGC	2 cut(s)	340, 402
BspANI	GGCC	1 cut(s)	1297
BspCNI	CTCAG	5 cut(s)	253, 582, 607, 814, 865
BspLI	GGNNCC	3 cut(s)	29, 74, 160
BspMI	ACCTGC	1 cut(s)	1186
BspT107I	GGYRCC	1 cut(s)	158
BspTI	CTTAAG	1 cut(s)	1213
BsrDI	GCAATG	2 cut(s)	457, 921
BsrI	ACTGG	3 cut(s)	271, 517, 863
BssECI	CCNNGG	3 cut(s)	111, 246, 315
BssMI	GATC	2 cut(s)	121, 484
BssSI	CACGAG	1 cut(s)	1050
BssT1I	CCWWGG	2 cut(s)	111, 246
Bst2BI	CACGAG	1 cut(s)	1050
Bst2UI	CCWGG	2 cut(s)	316, 473
Bst4CI	ACNGT	3 cut(s)	595, 651, 1065
Bst6I	CTCTTC	2 cut(s)	189, 384
BstAFI	CTTAAG	1 cut(s)	1213
BstBAI	YACGTR	1 cut(s)	785
BstDEI	CTNAG	6 cut(s)	48, 261, 569, 615, 822, 873
BstENI	CCTNNNNNAGG	1 cut(s)	1291
BstF5I	GGATG	6 cut(s)	180, 532, 820, 900, 904, 951
BstKTI	GATC	2 cut(s)	124, 487
BstMAI	GTCTC	3 cut(s)	257, 364, 1137
BstMBI	GATC	2 cut(s)	121, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	584
BstNI	CCWGG	2 cut(s)	316, 473
BstPAI	GACNNNNGTC	1 cut(s)	998
BstSCI	CCNGG	2 cut(s)	314, 471
BstSLI	GKGCMC	1 cut(s)	659
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	2 cut(s)	258, 1275
BstX2I	RGATCY	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	997
BstYI	RGATCY	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	1112
BsuRI	GGCC	1 cut(s)	1297
BtsCI	GGATG	6 cut(s)	180, 532, 820, 900, 904, 951
BtsIMutI	CAGTG	1 cut(s)	524
BveI	ACCTGC	1 cut(s)	1186
Cfr13I	GGNCC	2 cut(s)	27, 72
CviAII	CATG	1 cut(s)	325
DdeI	CTNAG	6 cut(s)	48, 261, 569, 615, 822, 873
DpnI	GATC	2 cut(s)	123, 486
DpnII	GATC	2 cut(s)	121, 484
DraI	TTTAAA	1 cut(s)	1207
Eam1104I	CTCTTC	2 cut(s)	189, 384
EarI	CTCTTC	2 cut(s)	189, 384
Eco130I	CCWWGG	2 cut(s)	111, 246
Eco147I	AGGCCT	1 cut(s)	1297
Eco24I	GRGCYC	2 cut(s)	136, 570
Eco32I	GATATC	1 cut(s)	458
Eco47I	GGWCC	2 cut(s)	27, 72
Eco57I	CTGAAG	2 cut(s)	645, 738
Eco72I	CACGTG	1 cut(s)	785
EcoNI	CCTNNNNNAGG	1 cut(s)	1291
EcoRII	CCWGG	2 cut(s)	314, 471
EcoRV	GATATC	1 cut(s)	458
EcoT14I	CCWWGG	2 cut(s)	111, 246
EcoT38I	GRGCYC	2 cut(s)	136, 570
ErhI	CCWWGG	2 cut(s)	111, 246
FaeI	CATG	1 cut(s)	328
FalI	AAGNNNNNCTT	2 cut(s)	794, 826
FatI	CATG	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	45, 340
FokI	GGATG	6 cut(s)	167, 519, 827, 907, 911, 958
FriOI	GRGCYC	2 cut(s)	136, 570
Fsp4HI	GCNGC	2 cut(s)	45, 340
FspBI	CTAG	3 cut(s)	546, 753, 1247
GluI	GCNGC	2 cut(s)	45, 340
GsaI	CCCAGC	1 cut(s)	913
GsuI	CTGGAG	2 cut(s)	288, 957
HaeIII	GGCC	1 cut(s)	1297
Hin1II	CATG	1 cut(s)	328
HincII	GTYRAC	2 cut(s)	106, 243
HindII	GTYRAC	2 cut(s)	106, 243
HindIII	AAGCTT	3 cut(s)	50, 739, 1185
HinfI	GANTC	8 cut(s)	329, 405, 468, 713, 1055, 1090, 1220, 1243
HpaI	GTTAAC	1 cut(s)	106
HphI	GGTGA	2 cut(s)	535, 925
Hpy166II	GTNNAC	4 cut(s)	106, 243, 431, 530
Hpy188I	TCNGA	3 cut(s)	22, 72, 718
Hpy188III	TCNNGA	4 cut(s)	184, 488, 936, 1050
Hpy8I	GTNNAC	4 cut(s)	106, 243, 431, 530
HpyAV	CCTTC	4 cut(s)	28, 206, 546, 611
HpyCH4III	ACNGT	3 cut(s)	595, 651, 1065
HpyCH4IV	ACGT	1 cut(s)	784
HpyCH4V	TGCA	5 cut(s)	587, 904, 956, 1240, 1292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	584
HpyF3I	CTNAG	6 cut(s)	48, 261, 569, 615, 822, 873
HpySE526I	ACGT	1 cut(s)	784
Hsp92II	CATG	1 cut(s)	328
KspAI	GTTAAC	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	121, 484
LmnI	GCTCC	1 cut(s)	269
Lsp1109I	GCAGC	1 cut(s)	31
MaeI	CTAG	3 cut(s)	546, 753, 1247
MaeII	ACGT	1 cut(s)	784
MaeIII	GTNAC	4 cut(s)	645, 704, 757, 1000
MalI	GATC	2 cut(s)	123, 486
MboI	GATC	2 cut(s)	121, 484
MfeI	CAATTG	1 cut(s)	1096
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	4 cut(s)	136, 274, 570, 659
MlyI	GAGTC	2 cut(s)	1229, 1252
MmeI	TCCRAC	1 cut(s)	1047
MnlI	CCTC	7 cut(s)	165, 372, 766, 817, 995, 1267, 1297
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	8 cut(s)	105, 383, 686, 1019, 1041, 1206, 1214, 1300
MslI	CAYNNNNRTG	2 cut(s)	652, 995
MspCI	CTTAAG	1 cut(s)	1213
MspR9I	CCNGG	2 cut(s)	316, 473
MunI	CAATTG	1 cut(s)	1096
Mva1269I	GAATGC	1 cut(s)	1126
MvaI	CCWGG	2 cut(s)	316, 473
MwoI	GCNNNNNNNGC	1 cut(s)	584
NdeII	GATC	2 cut(s)	121, 484
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	3 cut(s)	29, 74, 160
NmuCI	GTSAC	4 cut(s)	645, 704, 757, 1000
OliI	CACNNNNGTG	1 cut(s)	652
PceI	AGGCCT	1 cut(s)	1297
PctI	GAATGC	1 cut(s)	1126
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	6 cut(s)	329, 405, 468, 713, 1055, 1090
PfoI	TCCNGGA	1 cut(s)	471
PkrI	GCNGC	2 cut(s)	46, 341
PleI	GAGTC	2 cut(s)	1228, 1251
PmaCI	CACGTG	1 cut(s)	785
PmlI	CACGTG	1 cut(s)	785
PpsI	GAGTC	2 cut(s)	1228, 1251
Ppu21I	YACGTR	1 cut(s)	785
PshAI	GACNNNNGTC	1 cut(s)	998
Psp6I	CCWGG	2 cut(s)	314, 471
PspCI	CACGTG	1 cut(s)	785
PspFI	CCCAGC	1 cut(s)	909
PspGI	CCWGG	2 cut(s)	314, 471
PspN4I	GGNNCC	3 cut(s)	29, 74, 160
PspPI	GGNCC	2 cut(s)	27, 72
PsuI	RGATCY	1 cut(s)	121
RseI	CAYNNNNRTG	2 cut(s)	652, 995
SaqAI	TTAA	8 cut(s)	105, 383, 686, 1019, 1041, 1206, 1214, 1300
SatI	GCNGC	2 cut(s)	45, 340
Sau3AI	GATC	2 cut(s)	121, 484
Sau96I	GGNCC	2 cut(s)	27, 72
SchI	GAGTC	2 cut(s)	1229, 1252
ScrFI	CCNGG	2 cut(s)	316, 473
SduI	GDGCHC	4 cut(s)	136, 274, 570, 659
SinI	GGWCC	2 cut(s)	27, 72
SmiMI	CAYNNNNRTG	2 cut(s)	652, 995
SmlI	CTYRAG	2 cut(s)	1182, 1213
SmoI	CTYRAG	2 cut(s)	1182, 1213
SseBI	AGGCCT	1 cut(s)	1297
SsiI	CCGC	2 cut(s)	340, 402
SspI	AATATT	1 cut(s)	83
SspMI	CTAG	3 cut(s)	546, 753, 1247
StuI	AGGCCT	1 cut(s)	1297
StyD4I	CCNGG	2 cut(s)	314, 471
StyI	CCWWGG	2 cut(s)	111, 246
TaaI	ACNGT	3 cut(s)	595, 651, 1065
TaiI	ACGT	1 cut(s)	787
TaqI	TCGA	2 cut(s)	130, 680
TauI	GCSGC	1 cut(s)	342
TfiI	GAWTC	6 cut(s)	329, 405, 468, 713, 1055, 1090
Tru1I	TTAA	8 cut(s)	105, 383, 686, 1019, 1041, 1206, 1214, 1300
Tru9I	TTAA	8 cut(s)	105, 383, 686, 1019, 1041, 1206, 1214, 1300
TscAI	CASTG	1 cut(s)	524
TseFI	GTSAC	4 cut(s)	645, 704, 757, 1000
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	4 cut(s)	645, 704, 757, 1000
TspDTI	ATGAA	8 cut(s)	116, 216, 222, 245, 315, 1024, 1035, 1179
TspRI	CASTG	1 cut(s)	524
Vha464I	CTTAAG	1 cut(s)	1213
VpaK11BI	GGWCC	2 cut(s)	27, 72
XagI	CCTNNNNNAGG	1 cut(s)	1291
XapI	RAATTY	4 cut(s)	66, 233, 857, 1169
XcmI	CCANNNNNNNNNTGG	3 cut(s)	322, 524, 939
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	3 cut(s)	546, 753, 1247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.