Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002858

Physical Location & Seq

Genomic Coordinates Forward (+)

24782714 .. 24789618

Gene Structure 6905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0241200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCAGCTCGAGACGCTATTGGCATAACCCCACTGTACATGGGCTGGGGTCTTGATGGATCAATTTGGTTTGCTTCAGAAATGAAAGCTATAAGTGATGATTGTGAAAGATTCATATCTTTTCCTCCTGGGTATTTATACTCTAGCAAACAAGGAGGGCTGAGAAGATGGTACAATCCACAATGGTTTTTGGAGAAGATACCATCGATTCCTTATGGCGAGGCTTTTGAGAAGGCCGTGTTAAAGAGACTTATGACAGATGTACCATTCGGTGTTCTTTCGTCCGGAGGGTTGGACTCATCACTCGTTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCCGCAAGTCAGTGGGGGTCACAGTTACATACCTTTTGCGTTGGCTTGGAGTCTTCAAGGTTCTCCAGATTTGAAAGCAGCAAGAGAATGAAGTTGCAGATTATCTTGGAACTCATCATCACGAGCATAGATGCGCTTCAAGAAGTTATCTACCATATTGAGACATATGATGTGACCACTATCAGAGCCAGCACTCCAATGTTTCTTATGTCTCGTAAAATTAAATCTCTGGGAGTAAAAATGGTTCTTTCTGGGGAAGGTTCAGATGAAATCTTTGGTGGCTACTTGTATTTCCACAAGGCACCAAACAAGGAGGAGTTTGACCAAGAAACATGCCACAAGATCAGGCCTGATCTTGGGAGGATTGAGAAGTGGGTCTTACGCAAAGAATTTGATGATGATGATCAGAAGCCATATTTACCAAAGCACATCTTGTACAGGCAGAAGGAGCAGTTTAGTGATGGTGTCGGTTACAGCTGGATTGACGGCTTGAAAGATCACGCCAACAAACAAAATGCTGCAAGATCGACAGTTTTCGGTGGTCCTAGTGTGGCATGCAGCACAGCAAAAGCTGTGGATTGGGATGCGGAATGGTCCAAGAACCCTGATCCATCTGGTCGTGCTGCACTTGGTATACATGCAGCTGCATATGAGGAATCCAAAGATGTGAAGACTGGAAGTCCTGTGAGCGACTGTCCACAGAAACTTGTAAAAGGGGTTGCAGAGAAAGTGGCTGCAGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

363

Amino Acids

40.48

Weight (kDa)

6.67

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3700	PF12481	2 - 69	5.4e-06	Aluminium induced protein
GATase_7	PF13537	2 - 32	5.3e-06	Glutamine amidotransferase domain
Asn_synthase	PF00733	74 - 220	1.1e-35	Asparagine synthase
Asn_synthase	PF00733	235 - 288	1.1e-06	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002858)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13480
pyrus_communis	pycom08g06270
rosa_chinensis	RchiOBHm_Chr2g0086071 RchiOBHm_Chr2g0086081 RchiOBHm_Chr2g0086101 RchiOBHm_Chr2g0122661
rosa_laevigata	RLG00000015740 RLG00000015743 RLG00000018698 RLG00000018704
rosa_multiflora	Rmu_sc0003133.1_g000025 Rmu_sc0006012.1_g000008 Rmu_sc0017765.1_g000003 Rmu_sc0020050.1_g000004 Rmu_ssc0000041.1_g000003 Rmu_ssc0000355.1_g000017
rosa_roxburghii	Rroxscaffold_2G00106820 Rroxscaffold_2G00121390 Rroxscaffold_2G00154810 Rroxscaffold_6G00408820
rosa_rugosa	Rorug01G0465700 Rorug01G0465700 Rorug02G0241200
rosa_samantha	Rh2AG014900 Rh2AG015300 Rh2AG298900 Rh2BG015400 Rh2BG307800 Rh2CG015900 Rh2CG016300 Rh2CG285900 Rh2DG017200 Rh2DG017400 Rh4BG170400 Rh6CG207900 Rh6DG198200
rosa_wichuraiana	Rw2G001310 Rw2G001330 Rw2G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	646
AccI	GTMKAC	1 cut(s)	979
AccIII	TCCGGA	1 cut(s)	284
AciI	CCGC	2 cut(s)	348, 932
AclWI	GGATC	2 cut(s)	67, 947
AcsI	RAATTY	1 cut(s)	734
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	4 cut(s)	38, 173, 264, 782
AfiI	CCNNNNNNNGG	1 cut(s)	701
AgsI	TTSAA	4 cut(s)	402, 419, 485, 838
AhdI	GACNNNNNGTC	1 cut(s)	1023
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	5 cut(s)	8, 89, 822, 917, 989
AluI	AGCT	5 cut(s)	8, 89, 822, 917, 989
Alw26I	GTCTC	4 cut(s)	6, 241, 500, 561
AlwI	GGATC	2 cut(s)	67, 947
Ama87I	CYCGRG	1 cut(s)	9
Aor13HI	TCCGGA	1 cut(s)	284
AoxI	GGCC	2 cut(s)	234, 692
ApeKI	GCWGC	9 cut(s)	5, 311, 423, 863, 903, 968, 986, 989, 1079
ApoI	RAATTY	1 cut(s)	734
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	2 cut(s)	887, 939
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	2 cut(s)	887, 939
BaeI	ACNNNNGTAYC	2 cut(s)	246, 279
BanI	GGYRCC	1 cut(s)	646
BauI	CACGAG	1 cut(s)	466
BbsI	GAAGAC	2 cut(s)	390, 1022
BbvI	GCAGC	9 cut(s)	17, 298, 435, 850, 915, 955, 976, 998, 1066
BccI	CCATC	5 cut(s)	50, 162, 211, 800, 964
BceAI	ACGGC	2 cut(s)	221, 847
BciT130I	CCWGG	1 cut(s)	129
BclI	TGATCA	1 cut(s)	748
BcoDI	GTCTC	4 cut(s)	6, 241, 500, 561
BfaI	CTAG	2 cut(s)	144, 891
BfmI	CTRYAG	1 cut(s)	1080
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	2 cut(s)	887, 939
BmeRI	GACNNNNNGTC	1 cut(s)	1023
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	2 cut(s)	887, 939
BmiI	GGNNCC	1 cut(s)	648
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	2 cut(s)	466, 919
BpiI	GAAGAC	2 cut(s)	390, 1022
BpmI	CTGGAG	1 cut(s)	394
Bsa29I	ATCGAT	1 cut(s)	206
BsaBI	GATNNNNATC	2 cut(s)	115, 747
BsaJI	CCNNGG	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse1I	ACTGG	1 cut(s)	1024
Bse8I	GATNNNNATC	2 cut(s)	115, 747
BseAI	TCCGGA	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	129
BseCI	ATCGAT	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	1 cut(s)	934
BseJI	GATNNNNATC	2 cut(s)	115, 747
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	1024
BseRI	GAGGAG	1 cut(s)	674
BseXI	GCAGC	9 cut(s)	17, 298, 435, 850, 915, 955, 976, 998, 1066
BseYI	CCCAGC	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	954
BshFI	GGCC	2 cut(s)	236, 694
BshNI	GGYRCC	1 cut(s)	646
BshVI	ATCGAT	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmAI	GTCTC	4 cut(s)	6, 241, 500, 561
BsmBI	CGTCTC	1 cut(s)	6
BsnI	GGCC	2 cut(s)	236, 694
BsoBI	CYCGRG	1 cut(s)	9
Bsp13I	TCCGGA	1 cut(s)	284
Bsp1407I	TGTACA	2 cut(s)	36, 780
Bsp143I	GATC	7 cut(s)	59, 687, 697, 748, 841, 869, 952
BspACI	CCGC	2 cut(s)	348, 932
BspANI	GGCC	2 cut(s)	236, 694
BspCNI	CTCAG	1 cut(s)	153
BspDI	ATCGAT	1 cut(s)	206
BspEI	TCCGGA	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	648
BspMAI	CTGCAG	1 cut(s)	1084
BspPI	GGATC	2 cut(s)	67, 947
BspT107I	GGYRCC	1 cut(s)	646
BsrGI	TGTACA	2 cut(s)	36, 780
BsrI	ACTGG	1 cut(s)	1024
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	7 cut(s)	59, 687, 697, 748, 841, 869, 952
BssNAI	GTATAC	1 cut(s)	980
BssSI	CACGAG	1 cut(s)	466
Bst1107I	GTATAC	1 cut(s)	980
Bst2BI	CACGAG	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	4 cut(s)	36, 369, 877, 1040
BstAUI	TGTACA	2 cut(s)	36, 780
BstC8I	GCNNGC	2 cut(s)	535, 901
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	934
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	7 cut(s)	62, 690, 700, 751, 844, 872, 955
BstMAI	GTCTC	4 cut(s)	6, 241, 500, 561
BstMBI	GATC	7 cut(s)	59, 687, 697, 748, 841, 869, 952
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 317, 793
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	3 cut(s)	681, 903, 986
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	1080
BstV1I	GCAGC	9 cut(s)	17, 298, 435, 850, 915, 955, 976, 998, 1066
BstV2I	GAAGAC	2 cut(s)	390, 1022
BstZ17I	GTATAC	1 cut(s)	980
Bsu15I	ATCGAT	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	236, 694
BsuTUI	ATCGAT	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	934
BtsIMutI	CAGTG	2 cut(s)	32, 362
Cac8I	GCNNGC	2 cut(s)	535, 901
CfoI	GCGC	1 cut(s)	481
Cfr13I	GGNCC	2 cut(s)	887, 939
ClaI	ATCGAT	1 cut(s)	206
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	4 cut(s)	37, 172, 263, 781
CspCI	CAANNNNNGTGG	2 cut(s)	900, 935
CviAII	CATG	4 cut(s)	40, 678, 900, 983
CviQI	GTAC	4 cut(s)	37, 172, 263, 781
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	7 cut(s)	61, 689, 699, 750, 843, 871, 954
DpnII	GATC	7 cut(s)	59, 687, 697, 748, 841, 869, 952
DriI	GACNNNNNGTC	1 cut(s)	1023
Eam1105I	GACNNNNNGTC	1 cut(s)	1023
Eco147I	AGGCCT	1 cut(s)	694
Eco47I	GGWCC	2 cut(s)	887, 939
Eco57I	CTGAAG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	6
FaeI	CATG	4 cut(s)	43, 681, 903, 986
FalI	AAGNNNNNCTT	4 cut(s)	707, 739, 761, 793
FatI	CATG	4 cut(s)	39, 677, 899, 982
FauNDI	CATATG	2 cut(s)	511, 994
FbaI	TGATCA	1 cut(s)	748
FblI	GTMKAC	1 cut(s)	979
FokI	GGATG	1 cut(s)	941
FspBI	CTAG	2 cut(s)	144, 891
GlaI	GCGC	1 cut(s)	480
GsaI	CCCAGC	1 cut(s)	49
GsuI	CTGGAG	1 cut(s)	394
HaeIII	GGCC	2 cut(s)	236, 694
HapII	CCGG	1 cut(s)	285
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	4 cut(s)	43, 681, 903, 986
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HinfI	GANTC	5 cut(s)	111, 208, 296, 395, 1001
HpaII	CCGG	1 cut(s)	285
Hpy166II	GTNNAC	2 cut(s)	980, 1043
Hpy188I	TCNGA	5 cut(s)	79, 343, 530, 610, 753
Hpy188III	TCNNGA	6 cut(s)	11, 53, 285, 411, 466, 485
Hpy8I	GTNNAC	2 cut(s)	980, 1043
HpyAV	CCTTC	3 cut(s)	226, 596, 784
HpyCH4III	ACNGT	4 cut(s)	36, 369, 877, 1040
HpyCH4V	TGCA	8 cut(s)	442, 866, 903, 971, 986, 992, 1067, 1082
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 317, 793
HpyF3I	CTNAG	1 cut(s)	161
Hsp92II	CATG	4 cut(s)	43, 681, 903, 986
HspAI	GCGC	1 cut(s)	479
Kpn2I	TCCGGA	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	7 cut(s)	59, 687, 697, 748, 841, 869, 952
LmnI	GCTCC	1 cut(s)	793
Lsp1109I	GCAGC	9 cut(s)	17, 298, 435, 850, 915, 955, 976, 998, 1066
LweI	GCATC	2 cut(s)	466, 919
MaeI	CTAG	2 cut(s)	144, 891
MaeIII	GTNAC	4 cut(s)	363, 369, 517, 815
MalI	GATC	7 cut(s)	61, 689, 699, 750, 843, 871, 954
MboI	GATC	7 cut(s)	59, 687, 697, 748, 841, 869, 952
MboII	GAAGA	4 cut(s)	177, 208, 390, 1027
MluCI	AATT	3 cut(s)	63, 564, 734
MlyI	GAGTC	2 cut(s)	290, 404
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	7 cut(s)	135, 149, 214, 281, 652, 699, 991
MroI	TCCGGA	1 cut(s)	284
MseI	TTAA	2 cut(s)	242, 567
MslI	CAYNNNNRTG	1 cut(s)	542
MspA1I	CMGCKG	2 cut(s)	822, 989
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	3 cut(s)	14, 317, 793
NdeI	CATATG	2 cut(s)	511, 994
NdeII	GATC	7 cut(s)	59, 687, 697, 748, 841, 869, 952
NlaIII	CATG	4 cut(s)	43, 681, 903, 986
NlaIV	GGNNCC	1 cut(s)	648
NmuCI	GTSAC	2 cut(s)	363, 517
NspI	RCATGY	3 cut(s)	681, 903, 986
PaeI	GCATGC	1 cut(s)	903
PaeR7I	CTCGAG	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	694
PfeI	GAWTC	3 cut(s)	111, 208, 1001
PleI	GAGTC	2 cut(s)	290, 403
PpsI	GAGTC	2 cut(s)	290, 403
Psp6I	CCWGG	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	648
PspPI	GGNCC	2 cut(s)	887, 939
PsrI	GAACNNNNNNTAC	2 cut(s)	573, 605
PstI	CTGCAG	1 cut(s)	1084
PvuII	CAGCTG	2 cut(s)	822, 989
RsaI	GTAC	4 cut(s)	38, 173, 264, 782
RsaNI	GTAC	4 cut(s)	37, 172, 263, 781
RseI	CAYNNNNRTG	1 cut(s)	542
SaqAI	TTAA	2 cut(s)	242, 567
Sau3AI	GATC	7 cut(s)	59, 687, 697, 748, 841, 869, 952
Sau96I	GGNCC	2 cut(s)	887, 939
SchI	GAGTC	2 cut(s)	290, 404
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	8 cut(s)	10, 91, 380, 407, 607, 824, 919, 991
SfaNI	GCATC	2 cut(s)	466, 919
SfcI	CTRYAG	1 cut(s)	1080
Sfr274I	CTCGAG	1 cut(s)	9
SinI	GGWCC	2 cut(s)	887, 939
SlaI	CTCGAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SphI	GCATGC	1 cut(s)	903
Sse9I	AATT	3 cut(s)	63, 564, 734
SseBI	AGGCCT	1 cut(s)	694
SsiI	CCGC	2 cut(s)	348, 932
SspMI	CTAG	2 cut(s)	144, 891
StuI	AGGCCT	1 cut(s)	694
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	4 cut(s)	36, 369, 877, 1040
TaqI	TCGA	3 cut(s)	10, 206, 872
TasI	AATT	3 cut(s)	63, 564, 734
TatI	WGTACW	2 cut(s)	36, 780
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	3 cut(s)	111, 208, 1001
Tru1I	TTAA	2 cut(s)	242, 567
Tru9I	TTAA	2 cut(s)	242, 567
TscAI	CASTG	2 cut(s)	39, 362
TseFI	GTSAC	2 cut(s)	363, 517
TseI	GCWGC	9 cut(s)	5, 311, 423, 863, 903, 968, 986, 989, 1079
Tsp45I	GTSAC	2 cut(s)	363, 517
TspDTI	ATGAA	4 cut(s)	98, 103, 449, 627
TspRI	CASTG	2 cut(s)	39, 362
VpaK11BI	GGWCC	2 cut(s)	887, 939
XapI	RAATTY	1 cut(s)	734
XceI	RCATGY	3 cut(s)	681, 903, 986
XhoI	CTCGAG	1 cut(s)	9
XmiI	GTMKAC	1 cut(s)	979
XspI	CTAG	2 cut(s)	144, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.