Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002858

Physical Location & Seq

Genomic Coordinates Reverse (-)

1258493 .. 1261524

Gene Structure 3032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46161

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGAAGGTGAGTCAAGTTCTGATTGGACCCAGAAAGAGGAAGCTGCTAAGCTTCACATAGAAGAAATTCGGACCCAGAAATATTCAATTGGTAAAGACGAAGCTAACCCCTTAGGCAAAGATCTTCATCGAGCCCTGATGACCAACATCTCAAAAGATGCCAACTTTTTGAGGGAACTCATCCTGAACGCAGAAGAGAATGAATATGAAGAAGGTGTATTGCCAGAGATGAAGTTTGTGTTGACCAAGGAAGACATAACTGAGACTGGAGCACCAGCTACACTGTTGGTTTTCAATAATGAAGTTGGCTTTTCCAGGGAGAACATGGATTCCATTTGCGGCATAGGAAGCGGATTCAAAAGTGTATTTCTTGTGAGTTCACAGCCTTACATTTTCAGCAATGGATATCGTGTTAGATTCCAGGAAGAACCAGATCAAGATTGTGGTATTGGGTATATAGTTCCCCAGTGGGTGAGTGGACATCCTTCTATTTCTAGCATATATGATGTGTATGGGCTCAGTAATGCCTACCCTGCAACCACAGTTATCCTTCCTCTAAAGCCTGAGATGGTTGAAGCCGTGAGAGAGCAATTGTCACAGTTGTGCCCAGAGATTATCCTGTTCTTATCGAAGTTAAAGCAACTATCTGTACGTGACTATGATTCTGAAGTAGCTGATAGGGTTTCAAGCTTTCTTATATCTAGTGTGACTAAAAACAAGGAGGTTTCTTCACGTGTGGTTCAACTTTCAAAGAAAAACTTGGATGATACTGAGGAATTATGCGATTATTACTTGTGGGAAAAGGAATTTCCGGTAAAACCTGAGAATAGATTTGGTGTAAGGATGGATGTGCAGAGCTGGGTGATTACCATTGCTTTCCCATCTGGAGAAAGGATGAGAAATGCAACTTCTTCTGTTGGTATATTCGCTTTCCTCCCCACGACAATGGTCACAGACTTCCCGTTTTTAATTCAAGCTGACTTCATTCTTAATTCATCACGAGATTCTATACTGTTGGAAAATGTATGGAACTTGGGGATTCTCAATTGTATCCCATCAGCATTTGTGAATGCCTTTCACTCTCCTGATGATCCCTTACTGAGTGACTTAACCAACAGCATTGCAGGAAGAAGGTGTTTGAAGACCTCGGATTGGACAGATCCGTTTAAAACACCAGAAGAATCTATTCTGTTTGATCCAGCCTGGGAAAGTATTCTGGATCGTACAATGTTACCAACCATTGATGAGAATTTTTATGGAACTGATATTCTTGTATACAAGAGTCAGTTACGAGATATCGGTGTGAAGGTAGATCCTTTGAGTGTTTGTTCTCTTCTTTATGGGATATTTTCTAAGCTGCACGGCACTTATTTTGAAAATACTTTCATAAAAAGTATTTACACCTTCCTGAACAAGTTCCAATGGCATCCAGAAGAGCCAGATGGAACCGAAATTTTTATAGATACTGATGATTATGATTGGGTTAACCCTGATCATTGTGTACTTCATGGTGATCCAAATCTTAGGCGCAACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

512

Amino Acids

58.22

Weight (kDa)

4.62

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002858)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13480
pyrus_communis	pycom08g06270
rosa_chinensis	RchiOBHm_Chr2g0086071 RchiOBHm_Chr2g0086081 RchiOBHm_Chr2g0086101 RchiOBHm_Chr2g0122661
rosa_laevigata	RLG00000015740 RLG00000015743 RLG00000018698 RLG00000018704
rosa_multiflora	Rmu_sc0003133.1_g000025 Rmu_sc0006012.1_g000008 Rmu_sc0017765.1_g000003 Rmu_sc0020050.1_g000004 Rmu_ssc0000041.1_g000003 Rmu_ssc0000355.1_g000017
rosa_roxburghii	Rroxscaffold_2G00106820 Rroxscaffold_2G00121390 Rroxscaffold_2G00154810 Rroxscaffold_6G00408820
rosa_rugosa	Rorug01G0465700 Rorug01G0465700 Rorug02G0241200
rosa_samantha	Rh2AG014900 Rh2AG015300 Rh2AG298900 Rh2BG015400 Rh2BG307800 Rh2CG015900 Rh2CG016300 Rh2CG285900 Rh2DG017200 Rh2DG017400 Rh4BG170400 Rh6CG207900 Rh6DG198200
rosa_wichuraiana	Rw2G001310 Rw2G001330 Rw2G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1275
AciI	CCGC	2 cut(s)	339, 351
AclWI	GGATC	6 cut(s)	1085, 1154, 1190, 1227, 1307, 1508
AcsI	RAATTY	4 cut(s)	66, 806, 1249, 1452
AcuI	CTGAAG	1 cut(s)	687
AcvI	CACGTG	1 cut(s)	734
AfaI	GTAC	3 cut(s)	651, 1225, 1503
AfiI	CCNNNNNNNGG	2 cut(s)	37, 1152
AflIII	ACRYGT	1 cut(s)	733
AjnI	CCWGG	3 cut(s)	314, 420, 1202
AleI	CACNNNNGTG	1 cut(s)	601
AloI	GAACNNNNNNTCC	2 cut(s)	314, 346
AluBI	AGCT	9 cut(s)	44, 52, 104, 278, 674, 690, 858, 977, 1357
AluI	AGCT	9 cut(s)	44, 52, 104, 278, 674, 690, 858, 977, 1357
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	6 cut(s)	1085, 1154, 1190, 1227, 1307, 1508
ApeKI	GCWGC	2 cut(s)	44, 1357
ApoI	RAATTY	4 cut(s)	66, 806, 1249, 1452
Asp700I	GAANNNNTTC	4 cut(s)	66, 1185, 1212, 1415
AspLEI	GCGC	1 cut(s)	1530
AspS9I	GGNCC	2 cut(s)	27, 72
AsuHPI	GGTGA	4 cut(s)	20, 484, 874, 1523
AvaII	GGWCC	2 cut(s)	27, 72
AxyI	CCTNAGG	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	608
BanII	GRGCYC	2 cut(s)	136, 519
BauI	CACGAG	1 cut(s)	999
BbrPI	CACGTG	1 cut(s)	734
BbsI	GAAGAC	2 cut(s)	258, 1148
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	31, 1344
BccI	CCATC	5 cut(s)	562, 838, 889, 1063, 1436
BceAI	ACGGC	2 cut(s)	563, 1378
BciT130I	CCWGG	3 cut(s)	316, 422, 1204
BciVI	GTATCC	1 cut(s)	1061
BclI	TGATCA	1 cut(s)	1492
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	3 cut(s)	495, 702, 1537
BfuI	GTATCC	1 cut(s)	1061
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	3 cut(s)	45, 340, 1358
BlpI	GCTNAGC	1 cut(s)	48
BlsI	GCNGC	3 cut(s)	46, 341, 1359
Bme1390I	CCNGG	3 cut(s)	316, 422, 1204
Bme18I	GGWCC	2 cut(s)	27, 72
BmgT120I	GGNCC	2 cut(s)	27, 72
BmiI	GGNNCC	3 cut(s)	29, 74, 1447
BmrFI	CCNGG	3 cut(s)	316, 422, 1204
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	2 cut(s)	148, 1435
BmuI	ACTGGG	1 cut(s)	460
BoxI	GACNNNNGTC	1 cut(s)	947
BpiI	GAAGAC	2 cut(s)	258, 1148
BpmI	CTGGAG	2 cut(s)	288, 906
Bpu1102I	GCTNAGC	1 cut(s)	48
BsaAI	YACGTR	2 cut(s)	653, 734
BsaBI	GATNNNNATC	2 cut(s)	126, 1518
BsaJI	CCNNGG	4 cut(s)	246, 315, 1146, 1203
BsaWI	WCCGGW	1 cut(s)	811
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 1152
Bse1I	ACTGG	2 cut(s)	271, 466
Bse21I	CCTNAGG	1 cut(s)	112
Bse3DI	GCAATG	3 cut(s)	406, 870, 1119
Bse8I	GATNNNNATC	2 cut(s)	126, 1518
BseBI	CCWGG	3 cut(s)	316, 422, 1204
BseDI	CCNNGG	4 cut(s)	246, 315, 1146, 1203
BseGI	GGATG	7 cut(s)	180, 481, 769, 849, 853, 900, 1426
BseJI	GATNNNNATC	2 cut(s)	126, 1518
BseLI	CCNNNNNNNGG	2 cut(s)	37, 1152
BseMI	GCAATG	3 cut(s)	406, 870, 1119
BseMII	CTCAG	6 cut(s)	252, 532, 555, 762, 813, 1091
BseNI	ACTGG	2 cut(s)	271, 466
BseSI	GKGCMC	1 cut(s)	608
BseXI	GCAGC	2 cut(s)	31, 1344
BseYI	CCCAGC	1 cut(s)	858
BsgI	GTGCAG	2 cut(s)	872, 1343
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	812
BslI	CCNNNNNNNGG	2 cut(s)	37, 1152
BsmAI	GTCTC	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	1075
Bsp1286I	GDGCHC	4 cut(s)	136, 274, 519, 608
Bsp143I	GATC	9 cut(s)	121, 433, 1090, 1159, 1195, 1219, 1312, 1492, 1513
Bsp1720I	GCTNAGC	1 cut(s)	48
BspACI	CCGC	2 cut(s)	339, 351
BspCNI	CTCAG	6 cut(s)	253, 531, 556, 763, 814, 1092
BspLI	GGNNCC	3 cut(s)	29, 74, 1447
BspPI	GGATC	6 cut(s)	1085, 1154, 1190, 1227, 1307, 1508
BspQI	GCTCTTC	1 cut(s)	1428
BsrDI	GCAATG	3 cut(s)	406, 870, 1119
BsrI	ACTGG	2 cut(s)	271, 466
BssECI	CCNNGG	4 cut(s)	246, 315, 1146, 1203
BssMI	GATC	9 cut(s)	121, 433, 1090, 1159, 1195, 1219, 1312, 1492, 1513
BssNAI	GTATAC	1 cut(s)	1276
BssSI	CACGAG	1 cut(s)	999
BssT1I	CCWWGG	1 cut(s)	246
Bst1107I	GTATAC	1 cut(s)	1276
Bst2BI	CACGAG	1 cut(s)	999
Bst2UI	CCWGG	3 cut(s)	316, 422, 1204
Bst4CI	ACNGT	4 cut(s)	285, 544, 600, 1014
Bst6I	CTCTTC	3 cut(s)	189, 1338, 1428
BstBAI	YACGTR	2 cut(s)	653, 734
BstF5I	GGATG	7 cut(s)	180, 481, 769, 849, 853, 900, 1426
BstHHI	GCGC	1 cut(s)	1530
BstKTI	GATC	9 cut(s)	124, 436, 1093, 1162, 1198, 1222, 1315, 1495, 1516
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	9 cut(s)	121, 433, 1090, 1159, 1195, 1219, 1312, 1492, 1513
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 533
BstNI	CCWGG	3 cut(s)	316, 422, 1204
BstPAI	GACNNNNGTC	1 cut(s)	947
BstSCI	CCNGG	3 cut(s)	314, 420, 1202
BstSLI	GKGCMC	1 cut(s)	608
BstV1I	GCAGC	2 cut(s)	31, 1344
BstV2I	GAAGAC	2 cut(s)	258, 1148
BstX2I	RGATCY	3 cut(s)	121, 1159, 1312
BstXI	CCANNNNNNTGG	1 cut(s)	946
BstYI	RGATCY	3 cut(s)	121, 1159, 1312
BstZ17I	GTATAC	1 cut(s)	1276
Bsu36I	CCTNAGG	1 cut(s)	112
BsuI	GTATCC	1 cut(s)	1061
BtsCI	GGATG	7 cut(s)	180, 481, 769, 849, 853, 900, 1426
BtsIMutI	CAGTG	2 cut(s)	281, 473
CfoI	GCGC	1 cut(s)	1530
Cfr13I	GGNCC	2 cut(s)	27, 72
Csp6I	GTAC	3 cut(s)	650, 1224, 1502
CviAII	CATG	2 cut(s)	325, 1508
CviQI	GTAC	3 cut(s)	650, 1224, 1502
DpnI	GATC	9 cut(s)	123, 435, 1092, 1161, 1197, 1221, 1314, 1494, 1515
DpnII	GATC	9 cut(s)	121, 433, 1090, 1159, 1195, 1219, 1312, 1492, 1513
DraI	TTTAAA	1 cut(s)	1168
Eam1104I	CTCTTC	3 cut(s)	189, 1338, 1428
EarI	CTCTTC	3 cut(s)	189, 1338, 1428
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	2 cut(s)	136, 519
Eco32I	GATATC	2 cut(s)	407, 1297
Eco47I	GGWCC	2 cut(s)	27, 72
Eco57I	CTGAAG	1 cut(s)	687
Eco72I	CACGTG	1 cut(s)	734
Eco81I	CCTNAGG	1 cut(s)	112
EcoRII	CCWGG	3 cut(s)	314, 420, 1202
EcoRV	GATATC	2 cut(s)	407, 1297
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	2 cut(s)	136, 519
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	2 cut(s)	328, 1511
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FatI	CATG	2 cut(s)	324, 1507
FbaI	TGATCA	1 cut(s)	1492
FblI	GTMKAC	1 cut(s)	1275
Fnu4HI	GCNGC	3 cut(s)	45, 340, 1358
FokI	GGATG	7 cut(s)	167, 468, 776, 856, 860, 907, 1413
FriOI	GRGCYC	2 cut(s)	136, 519
Fsp4HI	GCNGC	3 cut(s)	45, 340, 1358
FspBI	CTAG	3 cut(s)	495, 702, 1537
GlaI	GCGC	1 cut(s)	1529
GluI	GCNGC	3 cut(s)	45, 340, 1358
GsaI	CCCAGC	1 cut(s)	862
GsuI	CTGGAG	2 cut(s)	288, 906
HapII	CCGG	1 cut(s)	812
HhaI	GCGC	1 cut(s)	1530
Hin1II	CATG	2 cut(s)	328, 1511
Hin6I	GCGC	1 cut(s)	1528
HinP1I	GCGC	1 cut(s)	1528
HincII	GTYRAC	2 cut(s)	243, 1486
HindII	GTYRAC	2 cut(s)	243, 1486
HindIII	AAGCTT	2 cut(s)	50, 688
HinfI	GANTC	9 cut(s)	11, 329, 354, 417, 662, 1004, 1039, 1181, 1282
HpaI	GTTAAC	1 cut(s)	1486
HpaII	CCGG	1 cut(s)	812
HphI	GGTGA	4 cut(s)	20, 484, 874, 1523
Hpy166II	GTNNAC	6 cut(s)	243, 380, 479, 1276, 1486, 1502
Hpy188I	TCNGA	4 cut(s)	22, 72, 667, 1150
Hpy188III	TCNNGA	8 cut(s)	184, 437, 885, 999, 1085, 1217, 1408, 1430
Hpy8I	GTNNAC	6 cut(s)	243, 380, 479, 1276, 1486, 1502
HpyAV	CCTTC	6 cut(s)	206, 495, 560, 1125, 1300, 1414
HpyCH4III	ACNGT	4 cut(s)	285, 544, 600, 1014
HpyCH4IV	ACGT	2 cut(s)	652, 733
HpyCH4V	TGCA	5 cut(s)	536, 853, 905, 1124, 1360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 533
HpySE526I	ACGT	2 cut(s)	652, 733
Hsp92II	CATG	2 cut(s)	328, 1511
HspAI	GCGC	1 cut(s)	1528
Ksp22I	TGATCA	1 cut(s)	1492
KspAI	GTTAAC	1 cut(s)	1486
Kzo9I	GATC	9 cut(s)	121, 433, 1090, 1159, 1195, 1219, 1312, 1492, 1513
LguI	GCTCTTC	1 cut(s)	1428
LmnI	GCTCC	1 cut(s)	269
Lsp1109I	GCAGC	2 cut(s)	31, 1344
LweI	GCATC	2 cut(s)	148, 1435
MaeI	CTAG	3 cut(s)	495, 702, 1537
MaeII	ACGT	2 cut(s)	652, 733
MaeIII	GTNAC	7 cut(s)	594, 653, 706, 949, 1103, 1230, 1287
MalI	GATC	9 cut(s)	123, 435, 1092, 1161, 1197, 1221, 1314, 1494, 1515
MboI	GATC	9 cut(s)	121, 433, 1090, 1159, 1195, 1219, 1312, 1492, 1513
MfeI	CAATTG	3 cut(s)	87, 590, 1045
MflI	RGATCY	3 cut(s)	121, 1159, 1312
MhlI	GDGCHC	4 cut(s)	136, 274, 519, 608
MlyI	GAGTC	2 cut(s)	20, 1291
MmeI	TCCRAC	1 cut(s)	996
MnlI	CCTC	7 cut(s)	31, 165, 564, 715, 766, 944, 1156
MroXI	GAANNNNTTC	4 cut(s)	66, 1185, 1212, 1415
MseI	TTAA	6 cut(s)	635, 968, 990, 1109, 1167, 1485
MslI	CAYNNNNRTG	2 cut(s)	601, 944
MspI	CCGG	1 cut(s)	812
MspR9I	CCNGG	3 cut(s)	316, 422, 1204
MunI	CAATTG	3 cut(s)	87, 590, 1045
Mva1269I	GAATGC	1 cut(s)	1075
MvaI	CCWGG	3 cut(s)	316, 422, 1204
MwoI	GCNNNNNNNGC	2 cut(s)	348, 533
NdeII	GATC	9 cut(s)	121, 433, 1090, 1159, 1195, 1219, 1312, 1492, 1513
NlaIII	CATG	2 cut(s)	328, 1511
NlaIV	GGNNCC	3 cut(s)	29, 74, 1447
NmuCI	GTSAC	5 cut(s)	594, 653, 706, 949, 1103
OliI	CACNNNNGTG	1 cut(s)	601
PciSI	GCTCTTC	1 cut(s)	1428
PctI	GAATGC	1 cut(s)	1075
PdmI	GAANNNNTTC	4 cut(s)	66, 1185, 1212, 1415
PfeI	GAWTC	7 cut(s)	329, 354, 417, 662, 1004, 1039, 1181
PfoI	TCCNGGA	1 cut(s)	420
PkrI	GCNGC	3 cut(s)	46, 341, 1359
PleI	GAGTC	2 cut(s)	19, 1290
PmaCI	CACGTG	1 cut(s)	734
PmlI	CACGTG	1 cut(s)	734
PpsI	GAGTC	2 cut(s)	19, 1290
Ppu21I	YACGTR	2 cut(s)	653, 734
PshAI	GACNNNNGTC	1 cut(s)	947
Psp6I	CCWGG	3 cut(s)	314, 420, 1202
PspCI	CACGTG	1 cut(s)	734
PspFI	CCCAGC	1 cut(s)	858
PspGI	CCWGG	3 cut(s)	314, 420, 1202
PspN4I	GGNNCC	3 cut(s)	29, 74, 1447
PspPI	GGNCC	2 cut(s)	27, 72
PsuI	RGATCY	3 cut(s)	121, 1159, 1312
RsaI	GTAC	3 cut(s)	651, 1225, 1503
RsaNI	GTAC	3 cut(s)	650, 1224, 1502
RseI	CAYNNNNRTG	2 cut(s)	601, 944
SapI	GCTCTTC	1 cut(s)	1428
SaqAI	TTAA	6 cut(s)	635, 968, 990, 1109, 1167, 1485
SatI	GCNGC	3 cut(s)	45, 340, 1358
Sau3AI	GATC	9 cut(s)	121, 433, 1090, 1159, 1195, 1219, 1312, 1492, 1513
Sau96I	GGNCC	2 cut(s)	27, 72
SchI	GAGTC	2 cut(s)	20, 1291
ScrFI	CCNGG	3 cut(s)	316, 422, 1204
SduI	GDGCHC	4 cut(s)	136, 274, 519, 608
SfaNI	GCATC	2 cut(s)	148, 1435
SinI	GGWCC	2 cut(s)	27, 72
SmiMI	CAYNNNNRTG	2 cut(s)	601, 944
SsiI	CCGC	2 cut(s)	339, 351
SspI	AATATT	1 cut(s)	83
SspMI	CTAG	3 cut(s)	495, 702, 1537
StyD4I	CCNGG	3 cut(s)	314, 420, 1202
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	4 cut(s)	285, 544, 600, 1014
TaiI	ACGT	2 cut(s)	655, 736
TaqI	TCGA	2 cut(s)	130, 629
TatI	WGTACW	1 cut(s)	1501
TauI	GCSGC	1 cut(s)	342
TfiI	GAWTC	7 cut(s)	329, 354, 417, 662, 1004, 1039, 1181
Tru1I	TTAA	6 cut(s)	635, 968, 990, 1109, 1167, 1485
Tru9I	TTAA	6 cut(s)	635, 968, 990, 1109, 1167, 1485
TscAI	CASTG	2 cut(s)	288, 473
TseFI	GTSAC	5 cut(s)	594, 653, 706, 949, 1103
TseI	GCWGC	2 cut(s)	44, 1357
Tsp45I	GTSAC	5 cut(s)	594, 653, 706, 949, 1103
TspDTI	ATGAA	9 cut(s)	116, 216, 222, 245, 315, 973, 984, 1375, 1496
TspGWI	ACGGA	1 cut(s)	1152
TspRI	CASTG	2 cut(s)	288, 473
VpaK11BI	GGWCC	2 cut(s)	27, 72
XapI	RAATTY	4 cut(s)	66, 806, 1249, 1452
XcmI	CCANNNNNNNNNTGG	2 cut(s)	322, 473
XmiI	GTMKAC	1 cut(s)	1275
XmnI	GAANNNNTTC	4 cut(s)	66, 1185, 1212, 1415
XspI	CTAG	3 cut(s)	495, 702, 1537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.