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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g13480 |
| pyrus_communis | pycom08g06270 |
| rosa_chinensis | RchiOBHm_Chr2g0086071 RchiOBHm_Chr2g0086081 RchiOBHm_Chr2g0086101 RchiOBHm_Chr2g0122661 |
| rosa_laevigata | RLG00000015740 RLG00000015743 RLG00000018698 RLG00000018704 |
| rosa_multiflora | Rmu_sc0003133.1_g000025 Rmu_sc0006012.1_g000008 Rmu_sc0017765.1_g000003 Rmu_sc0020050.1_g000004 Rmu_ssc0000041.1_g000003 Rmu_ssc0000355.1_g000017 |
| rosa_roxburghii | Rroxscaffold_2G00106820 Rroxscaffold_2G00121390 Rroxscaffold_2G00154810 Rroxscaffold_6G00408820 |
| rosa_rugosa | Rorug01G0465700 Rorug01G0465700 Rorug02G0241200 |
| rosa_samantha | Rh2AG014900 Rh2AG015300 Rh2AG298900 Rh2BG015400 Rh2BG307800 Rh2CG015900 Rh2CG016300 Rh2CG285900 Rh2DG017200 Rh2DG017400 Rh4BG170400 Rh6CG207900 Rh6DG198200 |
| rosa_wichuraiana | Rw2G001310 Rw2G001330 Rw2G023820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2035 |
| AatII | GACGTC | 1 cut(s) | 1031 |
| Acc36I | ACCTGC | 3 cut(s) | 637, 1741, 2035 |
| AccI | GTMKAC | 3 cut(s) | 935, 1230, 1677 |
| AccII | CGCG | 1 cut(s) | 765 |
| AciI | CCGC | 3 cut(s) | 1627, 1962, 2503 |
| AclWI | GGATC | 6 cut(s) | 1040, 1109, 1145, 1182, 1262, 1463 |
| AcoI | YGGCCR | 1 cut(s) | 2504 |
| AcsI | RAATTY | 7 cut(s) | 308, 620, 1204, 1407, 1815, 2206, 2264 |
| AcuI | CTGAAG | 5 cut(s) | 189, 763, 1524, 2070, 2316 |
| AcvI | CACGTG | 1 cut(s) | 236 |
| AcyI | GRCGYC | 1 cut(s) | 1028 |
| AfaI | GTAC | 4 cut(s) | 153, 1458, 2108, 2240 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 744, 1056, 1107, 1633, 2495 |
| AflII | CTTAAG | 1 cut(s) | 664 |
| AflIII | ACRYGT | 1 cut(s) | 235 |
| AjnI | CCWGG | 3 cut(s) | 1157, 1649, 2482 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2349, 2381 |
| AleI | CACNNNNGTG | 1 cut(s) | 103 |
| Alw21I | GWGCWC | 2 cut(s) | 1524, 1658 |
| Alw26I | GTCTC | 3 cut(s) | 588, 1881, 2062 |
| AlwI | GGATC | 6 cut(s) | 1040, 1109, 1145, 1182, 1262, 1463 |
| AoxI | GGCC | 3 cut(s) | 746, 1618, 2504 |
| ApoI | RAATTY | 7 cut(s) | 308, 620, 1204, 1407, 1815, 2206, 2264 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1140, 1167, 1370, 1924 |
| AspLEI | GCGC | 2 cut(s) | 1485, 1944 |
| AspS9I | GGNCC | 5 cut(s) | 784, 871, 1618, 2486, 2531 |
| AsuHPI | GGTGA | 3 cut(s) | 376, 1478, 1982 |
| AsuII | TTCGAA | 1 cut(s) | 2101 |
| AvaII | GGWCC | 4 cut(s) | 784, 871, 2486, 2531 |
| BaeGI | GKGCMC | 1 cut(s) | 110 |
| BanII | GRGCYC | 2 cut(s) | 21, 1524 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2177, 2209 |
| BauI | CACGAG | 1 cut(s) | 501 |
| BbrPI | CACGTG | 1 cut(s) | 236 |
| BbsI | GAAGAC | 2 cut(s) | 726, 1103 |
| Bbv12I | GWGCWC | 2 cut(s) | 1524, 1658 |
| BccI | CCATC | 9 cut(s) | 64, 340, 391, 565, 871, 1391, 1609, 2390, 2515 |
| BceAI | ACGGC | 2 cut(s) | 65, 1333 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 939, 973 |
| BciT130I | CCWGG | 3 cut(s) | 1159, 1651, 2484 |
| BciVI | GTATCC | 1 cut(s) | 563 |
| BclI | TGATCA | 3 cut(s) | 1447, 1767, 2406 |
| BcoDI | GTCTC | 3 cut(s) | 588, 1881, 2062 |
| BfaI | CTAG | 7 cut(s) | 204, 698, 788, 905, 1967, 2189, 2261 |
| BfmI | CTRYAG | 1 cut(s) | 958 |
| BfrI | CTTAAG | 1 cut(s) | 664 |
| BfuAI | ACCTGC | 3 cut(s) | 637, 1741, 2035 |
| BfuI | GTATCC | 1 cut(s) | 563 |
| Bme1390I | CCNGG | 3 cut(s) | 1159, 1651, 2484 |
| Bme18I | GGWCC | 4 cut(s) | 784, 871, 2486, 2531 |
| BmgT120I | GGNCC | 5 cut(s) | 784, 871, 1618, 2486, 2531 |
| BmiI | GGNNCC | 4 cut(s) | 785, 1402, 1839, 2488 |
| BmrFI | CCNGG | 3 cut(s) | 1159, 1651, 2484 |
| BmsI | GCATC | 7 cut(s) | 868, 954, 1023, 1390, 1594, 2090, 2443 |
| BoxI | GACNNNNGTC | 1 cut(s) | 449 |
| BpiI | GAAGAC | 2 cut(s) | 726, 1103 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1550, 1582 |
| BpmI | CTGGAG | 3 cut(s) | 408, 917, 1005 |
| Bpu14I | TTCGAA | 1 cut(s) | 2101 |
| BpuEI | CTTGAG | 3 cut(s) | 618, 735, 1843 |
| BsaAI | YACGTR | 3 cut(s) | 155, 236, 1582 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1473 |
| BsaHI | GRCGYC | 1 cut(s) | 1028 |
| BsaJI | CCNNGG | 3 cut(s) | 1101, 1158, 1909 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 744, 1056, 1107, 1633, 2495 |
| Bse1I | ACTGG | 5 cut(s) | 314, 602, 988, 1688, 2201 |
| Bse3DI | GCAATG | 3 cut(s) | 372, 1001, 1074 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1473 |
| BseBI | CCWGG | 3 cut(s) | 1159, 1651, 2484 |
| BseDI | CCNNGG | 3 cut(s) | 1101, 1158, 1909 |
| BseJI | GATNNNNATC | 1 cut(s) | 1473 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 744, 1056, 1107, 1633, 2495 |
| BseMI | GCAATG | 3 cut(s) | 372, 1001, 1074 |
| BseMII | CTCAG | 8 cut(s) | 34, 57, 264, 315, 836, 1046, 1299, 1743 |
| BseNI | ACTGG | 5 cut(s) | 314, 602, 988, 1688, 2201 |
| BseRI | GAGGAG | 2 cut(s) | 862, 1514 |
| BseSI | GKGCMC | 1 cut(s) | 110 |
| BseYI | CCCAGC | 1 cut(s) | 360 |
| BsgI | GTGCAG | 4 cut(s) | 374, 1298, 1978, 2330 |
| Bsh1236I | CGCG | 1 cut(s) | 765 |
| BshFI | GGCC | 3 cut(s) | 748, 1620, 2506 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1524, 1658 |
| BsiSI | CCGG | 1 cut(s) | 2347 |
| BslFI | GGGAC | 4 cut(s) | 797, 1073, 1842, 2472 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 744, 1056, 1107, 1633, 2495 |
| BsmAI | GTCTC | 3 cut(s) | 588, 1881, 2062 |
| BsmFI | GGGAC | 4 cut(s) | 797, 1073, 1842, 2472 |
| BsmI | GAATGC | 3 cut(s) | 577, 947, 1604 |
| BsnI | GGCC | 3 cut(s) | 748, 1620, 2506 |
| Bsp119I | TTCGAA | 1 cut(s) | 2101 |
| Bsp1286I | GDGCHC | 4 cut(s) | 21, 110, 1524, 1658 |
| BspACI | CCGC | 3 cut(s) | 1627, 1962, 2503 |
| BspANI | GGCC | 3 cut(s) | 748, 1620, 2506 |
| BspCNI | CTCAG | 8 cut(s) | 33, 58, 265, 316, 837, 1047, 1300, 1744 |
| BspFNI | CGCG | 1 cut(s) | 765 |
| BspHI | TCATGA | 1 cut(s) | 2440 |
| BspLI | GGNNCC | 4 cut(s) | 785, 1402, 1839, 2488 |
| BspMAI | CTGCAG | 1 cut(s) | 962 |
| BspMI | ACCTGC | 3 cut(s) | 637, 1741, 2035 |
| BspPI | GGATC | 6 cut(s) | 1040, 1109, 1145, 1182, 1262, 1463 |
| BspQI | GCTCTTC | 2 cut(s) | 1383, 1512 |
| BspT104I | TTCGAA | 1 cut(s) | 2101 |
| BspTI | CTTAAG | 1 cut(s) | 664 |
| BsrDI | GCAATG | 3 cut(s) | 372, 1001, 1074 |
| BsrI | ACTGG | 5 cut(s) | 314, 602, 988, 1688, 2201 |
| BssECI | CCNNGG | 3 cut(s) | 1101, 1158, 1909 |
| BssNAI | GTATAC | 2 cut(s) | 936, 1231 |
| BssNI | GRCGYC | 1 cut(s) | 1028 |
| BssSI | CACGAG | 1 cut(s) | 501 |
| BssT1I | CCWWGG | 2 cut(s) | 1101, 1909 |
| Bst1107I | GTATAC | 2 cut(s) | 936, 1231 |
| Bst2BI | CACGAG | 1 cut(s) | 501 |
| Bst2UI | CCWGG | 3 cut(s) | 1159, 1651, 2484 |
| Bst4CI | ACNGT | 5 cut(s) | 46, 102, 516, 2304, 2424 |
| Bst6I | CTCTTC | 5 cut(s) | 1293, 1383, 1512, 1695, 2058 |
| BstACI | GRCGYC | 1 cut(s) | 1028 |
| BstAFI | CTTAAG | 1 cut(s) | 664 |
| BstBAI | YACGTR | 3 cut(s) | 155, 236, 1582 |
| BstBI | TTCGAA | 1 cut(s) | 2101 |
| BstC8I | GCNNGC | 2 cut(s) | 991, 2313 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 742, 1054 |
| BstFNI | CGCG | 1 cut(s) | 765 |
| BstHHI | GCGC | 2 cut(s) | 1485, 1944 |
| BstMAI | GTCTC | 3 cut(s) | 588, 1881, 2062 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 35, 1626, 2279 |
| BstNI | CCWGG | 3 cut(s) | 1159, 1651, 2484 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 449 |
| BstSCI | CCNGG | 3 cut(s) | 1157, 1649, 2482 |
| BstSFI | CTRYAG | 1 cut(s) | 958 |
| BstSLI | GKGCMC | 1 cut(s) | 110 |
| BstUI | CGCG | 1 cut(s) | 765 |
| BstV2I | GAAGAC | 2 cut(s) | 726, 1103 |
| BstX2I | RGATCY | 2 cut(s) | 1114, 1267 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 448 |
| BstYI | RGATCY | 2 cut(s) | 1114, 1267 |
| BstZ17I | GTATAC | 2 cut(s) | 936, 1231 |
| BsuI | GTATCC | 1 cut(s) | 563 |
| BsuRI | GGCC | 3 cut(s) | 748, 1620, 2506 |
| BtgZI | GCGATG | 1 cut(s) | 1617 |
| BtsI | GCAGTG | 2 cut(s) | 1617, 2172 |
| BtsIMutI | CAGTG | 3 cut(s) | 609, 1617, 2172 |
| BveI | ACCTGC | 3 cut(s) | 637, 1741, 2035 |
| Cac8I | GCNNGC | 2 cut(s) | 991, 2313 |
| CciI | TCATGA | 1 cut(s) | 2440 |
| CfoI | GCGC | 2 cut(s) | 1485, 1944 |
| Cfr13I | GGNCC | 5 cut(s) | 784, 871, 1618, 2486, 2531 |
| CseI | GACGC | 1 cut(s) | 754 |
| CsiI | ACCWGGT | 1 cut(s) | 2482 |
| Csp6I | GTAC | 4 cut(s) | 152, 1457, 2107, 2239 |
| CviAII | CATG | 2 cut(s) | 1463, 2441 |
| CviQI | GTAC | 4 cut(s) | 152, 1457, 2107, 2239 |
| DraI | TTTAAA | 2 cut(s) | 658, 802 |
| EaeI | YGGCCR | 1 cut(s) | 2504 |
| Eam1104I | CTCTTC | 5 cut(s) | 1293, 1383, 1512, 1695, 2058 |
| EarI | CTCTTC | 5 cut(s) | 1293, 1383, 1512, 1695, 2058 |
| Ecl136II | GAGCTC | 1 cut(s) | 1522 |
| Eco130I | CCWWGG | 2 cut(s) | 1101, 1909 |
| Eco147I | AGGCCT | 1 cut(s) | 748 |
| Eco24I | GRGCYC | 2 cut(s) | 21, 1524 |
| Eco32I | GATATC | 1 cut(s) | 1252 |
| Eco47I | GGWCC | 4 cut(s) | 784, 871, 2486, 2531 |
| Eco53kI | GAGCTC | 1 cut(s) | 1522 |
| Eco57I | CTGAAG | 5 cut(s) | 189, 763, 1524, 2070, 2316 |
| Eco72I | CACGTG | 1 cut(s) | 236 |
| EcoICRI | GAGCTC | 1 cut(s) | 1522 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 742, 1054 |
| EcoO109I | RGGNCCY | 2 cut(s) | 784, 2531 |
| EcoRI | GAATTC | 1 cut(s) | 2206 |
| EcoRII | CCWGG | 3 cut(s) | 1157, 1649, 2482 |
| EcoRV | GATATC | 1 cut(s) | 1252 |
| EcoT14I | CCWWGG | 2 cut(s) | 1101, 1909 |
| EcoT22I | ATGCAT | 1 cut(s) | 947 |
| EcoT38I | GRGCYC | 2 cut(s) | 21, 1524 |
| ErhI | CCWWGG | 2 cut(s) | 1101, 1909 |
| FaeI | CATG | 2 cut(s) | 1466, 2444 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1773, 1805 |
| FaqI | GGGAC | 4 cut(s) | 797, 1073, 1842, 2472 |
| FatI | CATG | 2 cut(s) | 1462, 2440 |
| FbaI | TGATCA | 3 cut(s) | 1447, 1767, 2406 |
| FblI | GTMKAC | 3 cut(s) | 935, 1230, 1677 |
| FriOI | GRGCYC | 2 cut(s) | 21, 1524 |
| FspBI | CTAG | 7 cut(s) | 204, 698, 788, 905, 1967, 2189, 2261 |
| GlaI | GCGC | 2 cut(s) | 1484, 1943 |
| GsaI | CCCAGC | 1 cut(s) | 364 |
| GsuI | CTGGAG | 3 cut(s) | 408, 917, 1005 |
| HaeIII | GGCC | 3 cut(s) | 748, 1620, 2506 |
| HapII | CCGG | 1 cut(s) | 2347 |
| HgaI | GACGC | 1 cut(s) | 754 |
| HhaI | GCGC | 2 cut(s) | 1485, 1944 |
| Hin1I | GRCGYC | 1 cut(s) | 1028 |
| Hin1II | CATG | 2 cut(s) | 1466, 2444 |
| Hin6I | GCGC | 2 cut(s) | 1483, 1942 |
| HinP1I | GCGC | 2 cut(s) | 1483, 1942 |
| HincII | GTYRAC | 2 cut(s) | 1722, 1746 |
| HindII | GTYRAC | 2 cut(s) | 1722, 1746 |
| HindIII | AAGCTT | 2 cut(s) | 190, 636 |
| HpaII | CCGG | 1 cut(s) | 2347 |
| HphI | GGTGA | 3 cut(s) | 376, 1478, 1982 |
| Hpy166II | GTNNAC | 8 cut(s) | 936, 1231, 1457, 1678, 1722, 1746, 2194, 2241 |
| Hpy8I | GTNNAC | 8 cut(s) | 936, 1231, 1457, 1678, 1722, 1746, 2194, 2241 |
| HpyCH4III | ACNGT | 5 cut(s) | 46, 102, 516, 2304, 2424 |
| HpyCH4IV | ACGT | 5 cut(s) | 154, 235, 1028, 1581, 2105 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 35, 1626, 2279 |
| HpySE526I | ACGT | 5 cut(s) | 154, 235, 1028, 1581, 2105 |
| Hsp92I | GRCGYC | 1 cut(s) | 1028 |
| Hsp92II | CATG | 2 cut(s) | 1466, 2444 |
| HspAI | GCGC | 2 cut(s) | 1483, 1942 |
| Ksp22I | TGATCA | 3 cut(s) | 1447, 1767, 2406 |
| LguI | GCTCTTC | 2 cut(s) | 1383, 1512 |
| LmnI | GCTCC | 4 cut(s) | 986, 1527, 1661, 1843 |
| LweI | GCATC | 7 cut(s) | 868, 954, 1023, 1390, 1594, 2090, 2443 |
| MabI | ACCWGGT | 1 cut(s) | 2482 |
| MaeI | CTAG | 7 cut(s) | 204, 698, 788, 905, 1967, 2189, 2261 |
| MaeII | ACGT | 5 cut(s) | 154, 235, 1028, 1581, 2105 |
| MaeIII | GTNAC | 7 cut(s) | 96, 155, 208, 451, 979, 1185, 1242 |
| MfeI | CAATTG | 3 cut(s) | 92, 547, 966 |
| MflI | RGATCY | 2 cut(s) | 1114, 1267 |
| MhlI | GDGCHC | 4 cut(s) | 21, 110, 1524, 1658 |
| MlyI | GAGTC | 4 cut(s) | 680, 703, 1560, 1655 |
| MmeI | TCCRAC | 2 cut(s) | 498, 2119 |
| Mph1103I | ATGCAT | 1 cut(s) | 947 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1140, 1167, 1370, 1924 |
| MseI | TTAA | 9 cut(s) | 137, 470, 492, 657, 665, 801, 1064, 2009, 2115 |
| MslI | CAYNNNNRTG | 2 cut(s) | 103, 446 |
| MspA1I | CMGCKG | 1 cut(s) | 1962 |
| MspCI | CTTAAG | 1 cut(s) | 664 |
| MspI | CCGG | 1 cut(s) | 2347 |
| MspR9I | CCNGG | 3 cut(s) | 1159, 1651, 2484 |
| MunI | CAATTG | 3 cut(s) | 92, 547, 966 |
| Mva1269I | GAATGC | 3 cut(s) | 577, 947, 1604 |
| MvaI | CCWGG | 3 cut(s) | 1159, 1651, 2484 |
| MvnI | CGCG | 1 cut(s) | 765 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 35, 1626, 2279 |
| NlaIII | CATG | 2 cut(s) | 1466, 2444 |
| NlaIV | GGNNCC | 4 cut(s) | 785, 1402, 1839, 2488 |
| NmuCI | GTSAC | 4 cut(s) | 96, 155, 208, 451 |
| NsiI | ATGCAT | 1 cut(s) | 947 |
| NspV | TTCGAA | 1 cut(s) | 2101 |
| OliI | CACNNNNGTG | 1 cut(s) | 103 |
| PagI | TCATGA | 1 cut(s) | 2440 |
| PaqCI | CACCTGC | 1 cut(s) | 2035 |
| PceI | AGGCCT | 1 cut(s) | 748 |
| PciSI | GCTCTTC | 2 cut(s) | 1383, 1512 |
| PctI | GAATGC | 3 cut(s) | 577, 947, 1604 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1140, 1167, 1370, 1924 |
| PfeI | GAWTC | 8 cut(s) | 164, 506, 541, 1021, 1136, 1237, 1687, 1931 |
| PleI | GAGTC | 4 cut(s) | 679, 702, 1559, 1654 |
| PmaCI | CACGTG | 1 cut(s) | 236 |
| PmlI | CACGTG | 1 cut(s) | 236 |
| PpsI | GAGTC | 4 cut(s) | 679, 702, 1559, 1654 |
| Ppu21I | YACGTR | 3 cut(s) | 155, 236, 1582 |
| PpuMI | RGGWCCY | 2 cut(s) | 784, 2531 |
| PshAI | GACNNNNGTC | 1 cut(s) | 449 |
| Psp124BI | GAGCTC | 1 cut(s) | 1524 |
| Psp5II | RGGWCCY | 2 cut(s) | 784, 2531 |
| Psp6I | CCWGG | 3 cut(s) | 1157, 1649, 2482 |
| PspCI | CACGTG | 1 cut(s) | 236 |
| PspFI | CCCAGC | 1 cut(s) | 360 |
| PspGI | CCWGG | 3 cut(s) | 1157, 1649, 2482 |
| PspN4I | GGNNCC | 4 cut(s) | 785, 1402, 1839, 2488 |
| PspPI | GGNCC | 5 cut(s) | 784, 871, 1618, 2486, 2531 |
| PspPPI | RGGWCCY | 2 cut(s) | 784, 2531 |
| PstI | CTGCAG | 1 cut(s) | 962 |
| PsuI | RGATCY | 2 cut(s) | 1114, 1267 |
| RsaI | GTAC | 4 cut(s) | 153, 1458, 2108, 2240 |
| RsaNI | GTAC | 4 cut(s) | 152, 1457, 2107, 2239 |
| RseI | CAYNNNNRTG | 2 cut(s) | 103, 446 |
| SacI | GAGCTC | 1 cut(s) | 1524 |
| SapI | GCTCTTC | 2 cut(s) | 1383, 1512 |
| SaqAI | TTAA | 9 cut(s) | 137, 470, 492, 657, 665, 801, 1064, 2009, 2115 |
| Sau96I | GGNCC | 5 cut(s) | 784, 871, 1618, 2486, 2531 |
| SchI | GAGTC | 4 cut(s) | 680, 703, 1560, 1655 |
| ScrFI | CCNGG | 3 cut(s) | 1159, 1651, 2484 |
| SduI | GDGCHC | 4 cut(s) | 21, 110, 1524, 1658 |
| SexAI | ACCWGGT | 1 cut(s) | 2482 |
| SfaNI | GCATC | 7 cut(s) | 868, 954, 1023, 1390, 1594, 2090, 2443 |
| SfcI | CTRYAG | 1 cut(s) | 958 |
| SfuI | TTCGAA | 1 cut(s) | 2101 |
| SinI | GGWCC | 4 cut(s) | 784, 871, 2486, 2531 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 103, 446 |
| SmlI | CTYRAG | 4 cut(s) | 633, 664, 750, 1822 |
| SmoI | CTYRAG | 4 cut(s) | 633, 664, 750, 1822 |
| SseBI | AGGCCT | 1 cut(s) | 748 |
| SsiI | CCGC | 3 cut(s) | 1627, 1962, 2503 |
| SspI | AATATT | 1 cut(s) | 1508 |
| SspMI | CTAG | 7 cut(s) | 204, 698, 788, 905, 1967, 2189, 2261 |
| SstI | GAGCTC | 1 cut(s) | 1524 |
| StuI | AGGCCT | 1 cut(s) | 748 |
| StyD4I | CCNGG | 3 cut(s) | 1157, 1649, 2482 |
| StyI | CCWWGG | 2 cut(s) | 1101, 1909 |
| TaaI | ACNGT | 5 cut(s) | 46, 102, 516, 2304, 2424 |
| TaiI | ACGT | 5 cut(s) | 157, 238, 1031, 1584, 2108 |
| TaqI | TCGA | 3 cut(s) | 131, 2101, 2379 |
| TatI | WGTACW | 1 cut(s) | 1456 |
| TauI | GCSGC | 1 cut(s) | 2506 |
| TfiI | GAWTC | 8 cut(s) | 164, 506, 541, 1021, 1136, 1237, 1687, 1931 |
| Tru1I | TTAA | 9 cut(s) | 137, 470, 492, 657, 665, 801, 1064, 2009, 2115 |
| Tru9I | TTAA | 9 cut(s) | 137, 470, 492, 657, 665, 801, 1064, 2009, 2115 |
| TscAI | CASTG | 3 cut(s) | 609, 1617, 2172 |
| TseFI | GTSAC | 4 cut(s) | 96, 155, 208, 451 |
| Tsp45I | GTSAC | 4 cut(s) | 96, 155, 208, 451 |
| TspGWI | ACGGA | 1 cut(s) | 1107 |
| TspRI | CASTG | 3 cut(s) | 609, 1617, 2172 |
| Vha464I | CTTAAG | 1 cut(s) | 664 |
| VpaK11BI | GGWCC | 4 cut(s) | 784, 871, 2486, 2531 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 742, 1054 |
| XapI | RAATTY | 7 cut(s) | 308, 620, 1204, 1407, 1815, 2206, 2264 |
| XbaI | TCTAGA | 1 cut(s) | 2260 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1848 |
| XmiI | GTMKAC | 3 cut(s) | 935, 1230, 1677 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1140, 1167, 1370, 1924 |
| XspI | CTAG | 7 cut(s) | 204, 698, 788, 905, 1967, 2189, 2261 |
| ZraI | GACGTC | 1 cut(s) | 1029 |
| Zsp2I | ATGCAT | 1 cut(s) | 947 |