Rroxscaffold_2G00121390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002858
Physical Location & Seq
Forward (+)
54006511 .. 54009976
3466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00121390.1

Sequence Viewer

Length: 474 bp
ATGCCATTGGAAGATAGAAAAGATGCTGCATCCTCAATTGCTAGACTTAAGGTACTAAAGCGATGCGAGAGTACAAAAGCGGATGTGAAAAAAGTGAAGCTAGTTTCCTGGAAGAAGCGGTACGAGCGGTACTTCATTGATAGTTCAGGGTACAACAATGGAAAATCTGATCTAAAATTTGTTGTAGCTTTCGCTGACGAACTTGCTCAAGGACTGTTGGTGCAAGCAAAAGCAAGAGCAACATTGAGCAAGATCATCCAAATTGGGTTTTTGTCCGGTTTTAGTGAGAATGAAGTGGATGTCTTGCTAATGGGAGAAAATTTAGAGTTGTCTGTGGAAGATAAGGAATTTCTTGATGTTGCATTCCCCTCATCAACTGTTCCTGGTCCTGTTTGTGGGAAGCGGTCATCTATGGAGAGAGATCAATCGGACGCAGACCCTTCATCAACTACTTCGAGCAAGAGGCGGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.46

Weight (kDa)

9.05

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 127
AciI CCGC 5 cut(s) 80, 118, 127, 403, 466
AcsI RAATTY 3 cut(s) 176, 319, 347
AfaI GTAC 5 cut(s) 54, 73, 122, 131, 152
AfiI CCNNNNNNNGG 1 cut(s) 395
AflII CTTAAG 1 cut(s) 47
AjnI CCWGG 2 cut(s) 107, 382
AluBI AGCT 2 cut(s) 100, 188
AluI AGCT 2 cut(s) 100, 188
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 3 cut(s) 176, 319, 347
AspS9I GGNCC 1 cut(s) 386
AvaII GGWCC 1 cut(s) 386
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbvI GCAGC 1 cut(s) 13
BciT130I CCWGG 2 cut(s) 109, 384
BfaI CTAG 2 cut(s) 42, 101
BfrI CTTAAG 1 cut(s) 47
BisI GCNGC 2 cut(s) 27, 467
BlsI GCNGC 2 cut(s) 28, 468
Bme1390I CCNGG 2 cut(s) 109, 384
Bme18I GGWCC 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 386
BmrFI CCNGG 2 cut(s) 109, 384
BmsI GCATC 3 cut(s) 13, 38, 53
BpuEI CTTGAG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 395
BseBI CCWGG 2 cut(s) 109, 384
BseGI GGATG 4 cut(s) 29, 88, 255, 304
BseLI CCNNNNNNNGG 1 cut(s) 395
BseXI GCAGC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 395
BsmI GAATGC 1 cut(s) 362
Bsp143I GATC 3 cut(s) 169, 252, 421
BspACI CCGC 5 cut(s) 80, 118, 127, 403, 466
BspTI CTTAAG 1 cut(s) 47
BsrBI CCGCTC 1 cut(s) 127
BssMI GATC 3 cut(s) 169, 252, 421
Bst2UI CCWGG 2 cut(s) 109, 384
Bst4CI ACNGT 2 cut(s) 216, 379
BstAFI CTTAAG 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 225
BstF5I GGATG 4 cut(s) 29, 88, 255, 304
BstKTI GATC 3 cut(s) 172, 255, 424
BstMBI GATC 3 cut(s) 169, 252, 421
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNI CCWGG 2 cut(s) 109, 384
BstSCI CCNGG 2 cut(s) 107, 382
BstV1I GCAGC 1 cut(s) 13
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 4 cut(s) 29, 88, 255, 304
Cac8I GCNNGC 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 386
CseI GACGC 1 cut(s) 440
Csp6I GTAC 5 cut(s) 53, 72, 121, 130, 151
CviJI RGCY 2 cut(s) 100, 188
CviKI_1 RGCY 2 cut(s) 100, 188
CviQI GTAC 5 cut(s) 53, 72, 121, 130, 151
DpnI GATC 3 cut(s) 171, 254, 423
DpnII GATC 3 cut(s) 169, 252, 421
Eco47I GGWCC 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 107, 382
FaiI YATR 1 cut(s) 413
Fnu4HI GCNGC 2 cut(s) 27, 467
FokI GGATG 4 cut(s) 16, 95, 242, 311
Fsp4HI GCNGC 2 cut(s) 27, 467
FspBI CTAG 2 cut(s) 42, 101
GluI GCNGC 2 cut(s) 27, 467
HapII CCGG 1 cut(s) 276
HgaI GACGC 1 cut(s) 440
HpaII CCGG 1 cut(s) 276
Hpy188I TCNGA 2 cut(s) 169, 430
Hpy188III TCNNGA 1 cut(s) 353
HpyAV CCTTC 1 cut(s) 450
HpyCH4III ACNGT 2 cut(s) 216, 379
HpyCH4V TGCA 3 cut(s) 29, 223, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
Kzo9I GATC 3 cut(s) 169, 252, 421
LpnPI CCDG 7 cut(s) 94, 121, 132, 289, 369, 396, 402
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 3 cut(s) 13, 38, 53
MaeI CTAG 2 cut(s) 42, 101
MalI GATC 3 cut(s) 171, 254, 423
MbiI CCGCTC 1 cut(s) 127
MboI GATC 3 cut(s) 169, 252, 421
MboII GAAGA 3 cut(s) 23, 124, 350
MfeI CAATTG 1 cut(s) 36
MluCI AATT 5 cut(s) 36, 176, 261, 319, 347
MnlI CCTC 3 cut(s) 43, 379, 456
MseI TTAA 1 cut(s) 48
MspCI CTTAAG 1 cut(s) 47
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 2 cut(s) 109, 384
MunI CAATTG 1 cut(s) 36
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 2 cut(s) 109, 384
MwoI GCNNNNNNNGC 1 cut(s) 124
NdeII GATC 3 cut(s) 169, 252, 421
PctI GAATGC 1 cut(s) 362
PfoI TCCNGGA 1 cut(s) 107
PkrI GCNGC 2 cut(s) 28, 468
Psp6I CCWGG 2 cut(s) 107, 382
PspGI CCWGG 2 cut(s) 107, 382
PspPI GGNCC 1 cut(s) 386
RsaI GTAC 5 cut(s) 54, 73, 122, 131, 152
RsaNI GTAC 5 cut(s) 53, 72, 121, 130, 151
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 2 cut(s) 27, 467
Sau3AI GATC 3 cut(s) 169, 252, 421
Sau96I GGNCC 1 cut(s) 386
ScrFI CCNGG 2 cut(s) 109, 384
SetI ASST 3 cut(s) 54, 102, 190
SfaNI GCATC 3 cut(s) 13, 38, 53
SinI GGWCC 1 cut(s) 386
SmlI CTYRAG 2 cut(s) 47, 207
SmoI CTYRAG 2 cut(s) 47, 207
Sse9I AATT 5 cut(s) 36, 176, 261, 319, 347
SsiI CCGC 5 cut(s) 80, 118, 127, 403, 466
SspMI CTAG 2 cut(s) 42, 101
StyD4I CCNGG 2 cut(s) 107, 382
TaaI ACNGT 2 cut(s) 216, 379
TaqI TCGA 1 cut(s) 455
TasI AATT 5 cut(s) 36, 176, 261, 319, 347
TatI WGTACW 1 cut(s) 71
TauI GCSGC 1 cut(s) 469
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 3 cut(s) 124, 306, 432
Vha464I CTTAAG 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 386
XapI RAATTY 3 cut(s) 176, 319, 347
XspI CTAG 2 cut(s) 42, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.