Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002858

Physical Location & Seq

Genomic Coordinates Forward (+)

4853494 .. 4854486

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAGTTTTATGAGTCACTCGGAGTTAGAAAGCTTTCTGAATCTGTTGAGTGCAACATGGGTCATACACCATCATTGGAGCACTGGGAAAAGGTTTGATCCAAGCGAGAGGTTAATAAGGAGGGGTTTAATGAAGATTATTCTGGGTTTTCTTGTTCGTCCTCATGTAAACGTAAACATGCCCTTGAAGAGGAGACACGAGGCTGCAAAATCTATACTTGAACTGTCAGCGTACAAAGGTGACAAGCCGATTCAAGTCTGTTATCGGCTAATGCAATCTGCAGGTACAGTAGTGGAAGTAGAGAAACTAAAGCTGGTTCTTTGGGAGAAAAATTCGCAGCGCTTGCTCATTAAAAATCAGCCTATGAAAGCGGAAAAACTGATAGAATTTGTCACTTGTTTTGCCGATGAATTGGCGCAAGGGATGTTAGCGCAGACAACACACACTGCTGCAGATACCTTGAGCAGGATTATCCAAATGGGATTCATGTTTGATTTCAATGAGAATGATGTGGACTTTTTGCTGATGGAAGAAAATTTAGAGTTATTTGTTGAAGATGCACTGTTTCTTGATGCTGCATTCCTCCCGTCAGGAGGAGGTACTGGTCGTGTTTATCTAAAGAGTTCGTGTAAGAAGTCGGAGCTATTAGAACCTCTCTCGCTGATGGAGCCATGCAAGAAGCAGCGTCAGGGAATGTATCAAGGAGGAGTGTCAAAAAACTGCACTGGATTCTCAGGAGCTGCAAGTTATATGCTCTCTTTTTTTTTGGAACTTTTGGTCCAATTATTAAGTAGTTATTTATTTATTTATTTTGTAAAGGTATTATTGAATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

31.62

Weight (kDa)

8.21

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002858)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13480
pyrus_communis	pycom08g06270
rosa_chinensis	RchiOBHm_Chr2g0086071 RchiOBHm_Chr2g0086081 RchiOBHm_Chr2g0086101 RchiOBHm_Chr2g0122661
rosa_laevigata	RLG00000015740 RLG00000015743 RLG00000018698 RLG00000018704
rosa_multiflora	Rmu_sc0003133.1_g000025 Rmu_sc0006012.1_g000008 Rmu_sc0017765.1_g000003 Rmu_sc0020050.1_g000004 Rmu_ssc0000041.1_g000003 Rmu_ssc0000355.1_g000017
rosa_roxburghii	Rroxscaffold_2G00106820 Rroxscaffold_2G00121390 Rroxscaffold_2G00154810 Rroxscaffold_6G00408820
rosa_rugosa	Rorug01G0465700 Rorug01G0465700 Rorug02G0241200
rosa_samantha	Rh2AG014900 Rh2AG015300 Rh2AG298900 Rh2BG015400 Rh2BG307800 Rh2CG015900 Rh2CG016300 Rh2CG285900 Rh2DG017200 Rh2DG017400 Rh4BG170400 Rh6CG207900 Rh6DG198200
rosa_wichuraiana	Rw2G001310 Rw2G001330 Rw2G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	272
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	1 cut(s)	92
AcsI	RAATTY	3 cut(s)	331, 386, 535
AfaI	GTAC	3 cut(s)	233, 286, 601
AfeI	AGCGCT	1 cut(s)	341
AfiI	CCNNNNNNNGG	3 cut(s)	189, 465, 593
AgsI	TTSAA	6 cut(s)	187, 221, 254, 499, 554, 829
AloI	GAACNNNNNNTCC	2 cut(s)	762, 794
AluBI	AGCT	4 cut(s)	33, 313, 643, 740
AluI	AGCT	4 cut(s)	33, 313, 643, 740
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	92
AlwNI	CAGNNNCTG	1 cut(s)	740
Aor51HI	AGCGCT	1 cut(s)	341
ApeKI	GCWGC	6 cut(s)	203, 337, 449, 575, 682, 740
ApoI	RAATTY	3 cut(s)	331, 386, 535
Asp700I	GAANNNNTTC	1 cut(s)	33
AspLEI	GCGC	3 cut(s)	342, 418, 433
AspS9I	GGNCC	1 cut(s)	778
AsuHPI	GGTGA	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	778
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BauI	CACGAG	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	6 cut(s)	190, 349, 436, 562, 694, 727
BccI	CCATC	3 cut(s)	78, 520, 658
BcoDI	GTCTC	1 cut(s)	187
BfmI	CTRYAG	2 cut(s)	279, 450
BfoI	RGCGCY	1 cut(s)	343
BfuAI	ACCTGC	1 cut(s)	272
BisI	GCNGC	6 cut(s)	204, 338, 450, 576, 683, 741
BlsI	GCNGC	6 cut(s)	205, 339, 451, 577, 684, 742
Bme18I	GGWCC	1 cut(s)	778
BmgT120I	GGNCC	1 cut(s)	778
BmiI	GGNNCC	1 cut(s)	669
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	2 cut(s)	547, 562
BmuI	ACTGGG	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	481
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 465, 593
Bse1I	ACTGG	3 cut(s)	88, 607, 730
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	3 cut(s)	189, 465, 593
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	3 cut(s)	88, 607, 730
BseRI	GAGGAG	3 cut(s)	205, 609, 720
BseXI	GCAGC	6 cut(s)	190, 349, 436, 562, 694, 727
BsgI	GTGCAG	1 cut(s)	706
BsiHKAI	GWGCWC	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	189, 465, 593
BsmAI	GTCTC	1 cut(s)	187
BsmI	GAATGC	2 cut(s)	578, 835
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	97
BspACI	CCGC	1 cut(s)	371
BspCNI	CTCAG	1 cut(s)	746
BspLI	GGNNCC	1 cut(s)	669
BspMAI	CTGCAG	2 cut(s)	283, 454
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	92
BsrI	ACTGG	3 cut(s)	88, 607, 730
BssMI	GATC	1 cut(s)	97
BssSI	CACGAG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	197
Bst4CI	ACNGT	3 cut(s)	225, 289, 564
Bst6I	CTCTTC	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	1 cut(s)	733
BstENI	CCTNNNNNAGG	2 cut(s)	187, 463
BstF5I	GGATG	1 cut(s)	429
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	3 cut(s)	342, 418, 433
BstKTI	GATC	1 cut(s)	100
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	343, 667
BstNSI	RCATGY	1 cut(s)	181
BstSFI	CTRYAG	2 cut(s)	279, 450
BstV1I	GCAGC	6 cut(s)	190, 349, 436, 562, 694, 727
BtsCI	GGATG	1 cut(s)	429
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	4 cut(s)	81, 444, 560, 723
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	344
CaiI	CAGNNNCTG	1 cut(s)	740
CfoI	GCGC	3 cut(s)	342, 418, 433
Cfr13I	GGNCC	1 cut(s)	778
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	3 cut(s)	232, 285, 600
CviAII	CATG	5 cut(s)	57, 164, 178, 487, 672
CviJI	RGCY	9 cut(s)	33, 203, 247, 268, 313, 361, 643, 670, 740
CviKI_1	RGCY	9 cut(s)	33, 203, 247, 268, 313, 361, 643, 670, 740
CviQI	GTAC	3 cut(s)	232, 285, 600
DdeI	CTNAG	1 cut(s)	733
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	778
Eco47III	AGCGCT	1 cut(s)	341
EcoNI	CCTNNNNNAGG	2 cut(s)	187, 463
FaeI	CATG	5 cut(s)	60, 167, 181, 490, 675
FatI	CATG	5 cut(s)	56, 163, 177, 486, 671
Fnu4HI	GCNGC	6 cut(s)	204, 338, 450, 576, 683, 741
FokI	GGATG	1 cut(s)	436
Fsp4HI	GCNGC	6 cut(s)	204, 338, 450, 576, 683, 741
GlaI	GCGC	3 cut(s)	341, 417, 432
GluI	GCNGC	6 cut(s)	204, 338, 450, 576, 683, 741
HaeII	RGCGCY	1 cut(s)	343
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	3 cut(s)	342, 418, 433
Hin1II	CATG	5 cut(s)	60, 167, 181, 490, 675
Hin6I	GCGC	3 cut(s)	340, 416, 431
HinP1I	GCGC	3 cut(s)	340, 416, 431
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	5 cut(s)	13, 40, 250, 483, 729
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	3 cut(s)	169, 175, 514
Hpy188I	TCNGA	3 cut(s)	22, 39, 640
Hpy188III	TCNNGA	3 cut(s)	569, 591, 735
Hpy8I	GTNNAC	3 cut(s)	169, 175, 514
HpyCH4III	ACNGT	3 cut(s)	225, 289, 564
HpyCH4IV	ACGT	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	343, 667
HpyF3I	CTNAG	1 cut(s)	733
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	5 cut(s)	60, 167, 181, 490, 675
HspAI	GCGC	3 cut(s)	340, 416, 431
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	4 cut(s)	78, 640, 667, 737
Lsp1109I	GCAGC	6 cut(s)	190, 349, 436, 562, 694, 727
LweI	GCATC	2 cut(s)	547, 562
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	3 cut(s)	14, 239, 391
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	4 cut(s)	145, 199, 542, 566
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	5 cut(s)	331, 386, 410, 535, 782
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	618
MroXI	GAANNNNTTC	1 cut(s)	33
MseI	TTAA	4 cut(s)	113, 128, 351, 788
Mva1269I	GAATGC	2 cut(s)	578, 835
MwoI	GCNNNNNNNGC	2 cut(s)	343, 667
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	5 cut(s)	60, 167, 181, 490, 675
NlaIV	GGNNCC	1 cut(s)	669
NmuCI	GTSAC	3 cut(s)	14, 239, 391
NspI	RCATGY	1 cut(s)	181
PctI	GAATGC	2 cut(s)	578, 835
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	4 cut(s)	40, 250, 483, 729
PkrI	GCNGC	6 cut(s)	205, 339, 451, 577, 684, 742
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	669
PspPI	GGNCC	1 cut(s)	778
PstI	CTGCAG	2 cut(s)	283, 454
PstNI	CAGNNNCTG	1 cut(s)	740
RsaI	GTAC	3 cut(s)	233, 286, 601
RsaNI	GTAC	3 cut(s)	232, 285, 600
SaqAI	TTAA	4 cut(s)	113, 128, 351, 788
SatI	GCNGC	6 cut(s)	204, 338, 450, 576, 683, 741
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	1 cut(s)	778
SchI	GAGTC	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	83
SfaNI	GCATC	2 cut(s)	547, 562
SfcI	CTRYAG	2 cut(s)	279, 450
SinI	GGWCC	1 cut(s)	778
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
Sse9I	AATT	5 cut(s)	331, 386, 410, 535, 782
SsiI	CCGC	1 cut(s)	371
TaaI	ACNGT	3 cut(s)	225, 289, 564
TaiI	ACGT	1 cut(s)	174
TasI	AATT	5 cut(s)	331, 386, 410, 535, 782
TfiI	GAWTC	4 cut(s)	40, 250, 483, 729
Tru1I	TTAA	4 cut(s)	113, 128, 351, 788
Tru9I	TTAA	4 cut(s)	113, 128, 351, 788
TscAI	CASTG	4 cut(s)	88, 451, 567, 730
TseFI	GTSAC	3 cut(s)	14, 239, 391
TseI	GCWGC	6 cut(s)	203, 337, 449, 575, 682, 740
Tsp45I	GTSAC	3 cut(s)	14, 239, 391
TspDTI	ATGAA	4 cut(s)	146, 380, 423, 475
TspRI	CASTG	4 cut(s)	88, 451, 567, 730
VpaK11BI	GGWCC	1 cut(s)	778
XagI	CCTNNNNNAGG	2 cut(s)	187, 463
XapI	RAATTY	3 cut(s)	331, 386, 535
XceI	RCATGY	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.