Rorug01G0465700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002858
Physical Location & Seq
Reverse (-)
55824669 .. 55832035
7367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0465700.1

Sequence Viewer

Length: 1365 bp
ATGGATGGCTCAGATTACAGAAGGAAGATTTTAAACGGGTTCCTGCTCTTTCAATATATGCCAAAGATTTATAGAATCTACCTTTCGTGTAAAGAACTTAAACAAACCGGAATATGGGCTAGAGGTGCATTCAATATTTTTCTCTACATCCTCGCTAGTCATGTACTTGGAGCCTTTTGGTATTTCATTTCTATTCAACGAGAGACATCATGCTGGCACAGGGCTTGTGAAGGACATCCTAATATTATAGAATGTATGTCAACTTACTACTGTGATGACACACCTAGAAATCAACAATATATCACACTCCTCAGCAAAAATTGCTCGGCTGCAATTCCATCAAATGCAACACAATTTAATTTTGGAATCTTCCTTAATGCCCTTGAGCCCGATTTGTCTGATTTTCCCAAGAAGTTCTTTTACTCTTTCTGGTGGGGTCTGCGAAATCTAAGTTCTCTTGGTCAAAATTTGGAAACGAGTACCTATGTGTGGGAAAACTGCTTCGCAATCGTTATATCTCTAATTGGTTTGCTACTATTTTTGTATCTTATTGGAAATGTACAGACGTATATACAGTTGGCAACTACGAAATCGGAAGAGATAAGACAGAAGATGATAATGAAAGAGCTAGAGATACAATGGTGGATGTCCAGAAATCATCTCCCTAACGATATGAAGACAGTGATCATCGAAAACGTAAGACAGAAATTGGAAGAAAACAAAGATGTTCATGTGGAGAATCTACTCTCTATTCTTCCCCGGAAGGACAGAAGGTCCATAAAGCGCCTTCTCTGCATGGACTCACTTAAGAAAGTACCGATGCTTCGATATATGGATGAAAGTGTGTTAAAACTCATCTGCGACAATCTGAAACCAGTAATCTACACAGAGAACAGTTATGTAATTCGAGCAGGAGAACCACTTGATCTAATGCTCTTCAACGCAGAAGGCATTATATGGACTTACACAACAAGTACTGATGGTTCAATAAAAATGGGTTCCTCAATCACACAGTGTCTTGGTAAAGGTGATTTCTATGGAGAAGAACTTTTGAGTTGGGCTTCCTCATACATGTCCTTCTCCGACCTCCCTATCTCGACCCAAAATGTAAAATGCCATACAAAAGTTGAAGCCTTTACTCTCATGGCAAAGGACTTGAAGGCTGTGGTCTCCAAATTCTGGTGGCATTTCAGCAAGGCGGTTCCCGATTTGAACAGAAACAATTCTCAGCTGGAGGAATTGGCTCTTTCTTCCCTAAGAGCCCGTCGCCGCAAACGATCAAAGAAGCATATAAAAGCTCCTCAGTTGTCTACTTACTCCCAAGAACTTGGGTACCTGCGGCTATACCCTGTTAATCGTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

454

Amino Acids

52.91

Weight (kDa)

9.07

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 14 - 198 1.4e-08 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1344
Acc65I GGTACC 1 cut(s) 1332
AccB1I GGYRCC 1 cut(s) 1332
AccB7I CCANNNNNTGG 1 cut(s) 1179
AccI GTMKAC 1 cut(s) 1310
AciI CCGC 3 cut(s) 1199, 1270, 1339
AcsI RAATTY 2 cut(s) 466, 1175
AdeI CACNNNGTG 1 cut(s) 1014
AfaI GTAC 6 cut(s) 165, 481, 561, 816, 976, 1334
AfiI CCNNNNNNNGG 3 cut(s) 114, 489, 1179
AflII CTTAAG 1 cut(s) 806
AflIII ACRYGT 1 cut(s) 1071
AgsI TTSAA 8 cut(s) 53, 133, 197, 940, 987, 1130, 1159, 1213
AhdI GACNNNNNGTC 1 cut(s) 772
AluBI AGCT 3 cut(s) 628, 1231, 1298
AluI AGCT 3 cut(s) 628, 1231, 1298
Alw26I GTCTC 2 cut(s) 197, 1174
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 2 cut(s) 466, 1175
Asp700I GAANNNNTTC 1 cut(s) 1222
Asp718I GGTACC 1 cut(s) 1332
AspLEI GCGC 1 cut(s) 786
AspS9I GGNCC 1 cut(s) 774
AsuC2I CCSGG 1 cut(s) 760
AsuHPI GGTGA 1 cut(s) 1040
AvaII GGWCC 1 cut(s) 774
BaeI ACNNNNGTAYC 4 cut(s) 626, 659, 1316, 1349
BanI GGYRCC 1 cut(s) 1332
BanII GRGCYC 2 cut(s) 390, 1264
BarI GAAGNNNNNNTAC 4 cut(s) 404, 436, 807, 839
BbsI GAAGAC 1 cut(s) 683
BbvCI CCTCAGC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 316
BccI CCATC 2 cut(s) 346, 974
BclI TGATCA 1 cut(s) 684
BcnI CCSGG 1 cut(s) 760
BcoDI GTCTC 2 cut(s) 197, 1174
BfaI CTAG 4 cut(s) 120, 156, 285, 629
BfoI RGCGCY 1 cut(s) 787
BfrI CTTAAG 1 cut(s) 806
BfuAI ACCTGC 1 cut(s) 1344
BisI GCNGC 3 cut(s) 330, 1270, 1340
BlsI GCNGC 3 cut(s) 331, 1271, 1341
BmcAI AGTACT 1 cut(s) 976
Bme1390I CCNGG 1 cut(s) 760
Bme18I GGWCC 1 cut(s) 774
BmeRI GACNNNNNGTC 1 cut(s) 772
BmgT120I GGNCC 1 cut(s) 774
BmiI GGNNCC 5 cut(s) 41, 172, 1000, 1203, 1334
BmrFI CCNGG 1 cut(s) 760
BmsI GCATC 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 683
BpmI CTGGAG 1 cut(s) 1253
Bpu10I CCTNAGC 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 760
BsaI GGTCTC 1 cut(s) 1174
BsaJI CCNNGG 1 cut(s) 758
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 489, 1179
Bse1I ACTGG 1 cut(s) 875
BseDI CCNNGG 1 cut(s) 758
BseGI GGATG 5 cut(s) 10, 147, 235, 651, 841
BseLI CCNNNNNNNGG 3 cut(s) 114, 489, 1179
BseMII CTCAG 4 cut(s) 24, 325, 1241, 1316
BseNI ACTGG 1 cut(s) 875
BseRI GAGGAG 2 cut(s) 299, 1290
BseXI GCAGC 1 cut(s) 316
BshNI GGYRCC 1 cut(s) 1332
BsiSI CCGG 2 cut(s) 108, 760
BslI CCNNNNNNNGG 3 cut(s) 114, 489, 1179
BsmAI GTCTC 2 cut(s) 197, 1174
BsmI GAATGC 1 cut(s) 128
Bso31I GGTCTC 1 cut(s) 1174
Bsp1286I GDGCHC 2 cut(s) 390, 1264
Bsp1407I TGTACA 1 cut(s) 559
Bsp143I GATC 3 cut(s) 684, 925, 1277
BspACI CCGC 3 cut(s) 1199, 1270, 1339
BspCNI CTCAG 4 cut(s) 23, 324, 1240, 1315
BspLI GGNNCC 5 cut(s) 41, 172, 1000, 1203, 1334
BspMI ACCTGC 1 cut(s) 1344
BspQI GCTCTTC 1 cut(s) 941
BspT107I GGYRCC 1 cut(s) 1332
BspTI CTTAAG 1 cut(s) 806
BspTNI GGTCTC 1 cut(s) 1174
BsrGI TGTACA 1 cut(s) 559
BsrI ACTGG 1 cut(s) 875
BssECI CCNNGG 1 cut(s) 758
BssMI GATC 3 cut(s) 684, 925, 1277
Bst4CI ACNGT 5 cut(s) 272, 576, 682, 896, 1014
Bst6I CTCTTC 2 cut(s) 591, 941
BstAFI CTTAAG 1 cut(s) 806
BstAPI GCANNNNNTGC 1 cut(s) 321
BstAUI TGTACA 1 cut(s) 559
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 6 cut(s) 10, 311, 449, 1227, 1256, 1302
BstF5I GGATG 5 cut(s) 10, 147, 235, 651, 841
BstH2I RGCGCY 1 cut(s) 787
BstHHI GCGC 1 cut(s) 786
BstKTI GATC 3 cut(s) 687, 928, 1280
BstMAI GTCTC 2 cut(s) 197, 1174
BstMBI GATC 3 cut(s) 684, 925, 1277
BstMWI GCNNNNNNNGC 3 cut(s) 125, 321, 792
BstNSI RCATGY 1 cut(s) 1075
BstSCI CCNGG 1 cut(s) 758
BstV1I GCAGC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 683
BstXI CCANNNNNNTGG 1 cut(s) 1328
BtsCI GGATG 5 cut(s) 10, 147, 235, 651, 841
BtsIMutI CAGTG 2 cut(s) 687, 1019
BveI ACCTGC 1 cut(s) 1344
Cac8I GCNNGC 1 cut(s) 215
CfoI GCGC 1 cut(s) 786
Cfr13I GGNCC 1 cut(s) 774
Csp6I GTAC 6 cut(s) 164, 480, 560, 815, 975, 1333
CviAII CATG 6 cut(s) 161, 210, 731, 796, 1072, 1144
CviQI GTAC 6 cut(s) 164, 480, 560, 815, 975, 1333
DdeI CTNAG 6 cut(s) 10, 311, 449, 1227, 1256, 1302
DpnI GATC 3 cut(s) 686, 927, 1279
DpnII GATC 3 cut(s) 684, 925, 1277
DraI TTTAAA 1 cut(s) 33
DraIII CACNNNGTG 1 cut(s) 1014
DriI GACNNNNNGTC 1 cut(s) 772
Eam1104I CTCTTC 2 cut(s) 591, 941
Eam1105I GACNNNNNGTC 1 cut(s) 772
EarI CTCTTC 2 cut(s) 591, 941
Eco24I GRGCYC 2 cut(s) 390, 1264
Eco31I GGTCTC 1 cut(s) 1174
Eco47I GGWCC 1 cut(s) 774
EcoT38I GRGCYC 2 cut(s) 390, 1264
FaeI CATG 6 cut(s) 164, 213, 734, 799, 1075, 1147
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FatI CATG 6 cut(s) 160, 209, 730, 795, 1071, 1143
FbaI TGATCA 1 cut(s) 684
FblI GTMKAC 1 cut(s) 1310
Fnu4HI GCNGC 3 cut(s) 330, 1270, 1340
FokI GGATG 5 cut(s) 17, 134, 222, 658, 848
FriOI GRGCYC 2 cut(s) 390, 1264
Fsp4HI GCNGC 3 cut(s) 330, 1270, 1340
FspBI CTAG 4 cut(s) 120, 156, 285, 629
GlaI GCGC 1 cut(s) 785
GluI GCNGC 3 cut(s) 330, 1270, 1340
GsuI CTGGAG 1 cut(s) 1253
HaeII RGCGCY 1 cut(s) 787
HapII CCGG 2 cut(s) 108, 760
HhaI GCGC 1 cut(s) 786
Hin1II CATG 6 cut(s) 164, 213, 734, 799, 1075, 1147
Hin6I GCGC 1 cut(s) 784
HinP1I GCGC 1 cut(s) 784
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 4 cut(s) 75, 366, 739, 800
HpaII CCGG 2 cut(s) 108, 760
HphI GGTGA 1 cut(s) 1040
Hpy166II GTNNAC 2 cut(s) 261, 1311
Hpy188I TCNGA 5 cut(s) 13, 400, 595, 870, 1084
Hpy188III TCNNGA 3 cut(s) 651, 1096, 1205
Hpy8I GTNNAC 2 cut(s) 261, 1311
Hpy99I CGWCG 1 cut(s) 1269
HpyAV CCTTC 8 cut(s) 15, 224, 757, 765, 797, 941, 1087, 1153
HpyCH4III ACNGT 5 cut(s) 272, 576, 682, 896, 1014
HpyCH4IV ACGT 2 cut(s) 566, 696
HpyCH4V TGCA 4 cut(s) 128, 332, 347, 795
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 321, 792
HpyF3I CTNAG 6 cut(s) 10, 311, 449, 1227, 1256, 1302
HpySE526I ACGT 2 cut(s) 566, 696
Hsp92II CATG 6 cut(s) 164, 213, 734, 799, 1075, 1147
HspAI GCGC 1 cut(s) 784
KpnI GGTACC 1 cut(s) 1336
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 3 cut(s) 684, 925, 1277
LguI GCTCTTC 1 cut(s) 941
LmnI GCTCC 2 cut(s) 170, 1303
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 1 cut(s) 810
MaeI CTAG 4 cut(s) 120, 156, 285, 629
MaeII ACGT 2 cut(s) 566, 696
MalI GATC 3 cut(s) 686, 927, 1279
MboI GATC 3 cut(s) 684, 925, 1277
MhlI GDGCHC 2 cut(s) 390, 1264
MlyI GAGTC 1 cut(s) 794
MmeI TCCRAC 1 cut(s) 1107
MnlI CCTC 8 cut(s) 116, 161, 320, 1012, 1075, 1097, 1228, 1311
MroXI GAANNNNTTC 1 cut(s) 1222
MseI TTAA 7 cut(s) 32, 99, 357, 375, 807, 848, 1353
MspA1I CMGCKG 1 cut(s) 1231
MspCI CTTAAG 1 cut(s) 806
MspI CCGG 2 cut(s) 108, 760
MspR9I CCNGG 1 cut(s) 760
Mva1269I GAATGC 1 cut(s) 128
MwoI GCNNNNNNNGC 3 cut(s) 125, 321, 792
NciI CCSGG 1 cut(s) 760
NdeII GATC 3 cut(s) 684, 925, 1277
NlaIII CATG 6 cut(s) 164, 213, 734, 799, 1075, 1147
NlaIV GGNNCC 5 cut(s) 41, 172, 1000, 1203, 1334
NmeAIII GCCGAG 1 cut(s) 305
NspI RCATGY 1 cut(s) 1075
PciI ACATGT 1 cut(s) 1071
PciSI GCTCTTC 1 cut(s) 941
PcsI WCGNNNNNNNCGW 1 cut(s) 1273
PctI GAATGC 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 1222
PfeI GAWTC 3 cut(s) 75, 366, 739
PflMI CCANNNNNTGG 1 cut(s) 1179
PkrI GCNGC 3 cut(s) 331, 1271, 1341
PleI GAGTC 1 cut(s) 794
PpsI GAGTC 1 cut(s) 794
PscI ACATGT 1 cut(s) 1071
PspN4I GGNNCC 5 cut(s) 41, 172, 1000, 1203, 1334
PspPI GGNCC 1 cut(s) 774
PsrI GAACNNNNNNTAC 2 cut(s) 967, 999
PvuII CAGCTG 1 cut(s) 1231
RsaI GTAC 6 cut(s) 165, 481, 561, 816, 976, 1334
RsaNI GTAC 6 cut(s) 164, 480, 560, 815, 975, 1333
SapI GCTCTTC 1 cut(s) 941
SaqAI TTAA 7 cut(s) 32, 99, 357, 375, 807, 848, 1353
SatI GCNGC 3 cut(s) 330, 1270, 1340
Sau3AI GATC 3 cut(s) 684, 925, 1277
Sau96I GGNCC 1 cut(s) 774
ScaI AGTACT 1 cut(s) 976
SchI GAGTC 1 cut(s) 794
ScrFI CCNGG 1 cut(s) 760
SduI GDGCHC 2 cut(s) 390, 1264
SfaNI GCATC 1 cut(s) 810
SinI GGWCC 1 cut(s) 774
SmlI CTYRAG 2 cut(s) 383, 806
SmoI CTYRAG 2 cut(s) 383, 806
SsiI CCGC 3 cut(s) 1199, 1270, 1339
SspI AATATT 2 cut(s) 136, 244
SspMI CTAG 4 cut(s) 120, 156, 285, 629
StyD4I CCNGG 1 cut(s) 758
TaaI ACNGT 5 cut(s) 272, 576, 682, 896, 1014
TaiI ACGT 2 cut(s) 569, 699
TaqI TCGA 4 cut(s) 690, 826, 907, 1097
TatI WGTACW 3 cut(s) 163, 559, 974
TauI GCSGC 2 cut(s) 1272, 1342
TfiI GAWTC 3 cut(s) 75, 366, 739
Tru1I TTAA 7 cut(s) 32, 99, 357, 375, 807, 848, 1353
Tru9I TTAA 7 cut(s) 32, 99, 357, 375, 807, 848, 1353
TscAI CASTG 2 cut(s) 687, 1019
TseI GCWGC 1 cut(s) 329
TspDTI ATGAA 5 cut(s) 175, 635, 689, 719, 852
TspRI CASTG 2 cut(s) 687, 1019
Van91I CCANNNNNTGG 1 cut(s) 1179
Vha464I CTTAAG 1 cut(s) 806
VpaK11BI GGWCC 1 cut(s) 774
XapI RAATTY 2 cut(s) 466, 1175
XceI RCATGY 1 cut(s) 1075
XmiI GTMKAC 1 cut(s) 1310
XmnI GAANNNNTTC 1 cut(s) 1222
XspI CTAG 4 cut(s) 120, 156, 285, 629
ZrmI AGTACT 1 cut(s) 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.