RchiOBHm_Chr2g0086071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002858
Physical Location & Seq
Reverse (-)
1257164 .. 1258491
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46160

Sequence Viewer

Length: 957 bp
ATGGGCCAAGACCGCCAAGTGGCTCTGGTAGAGTCCTGGTGCTCCTTCTGGAAGTATGTTGTAGACAACTGGAATCCAAACTTTGAAGAGTGTCTAAGACAGAAGTTGACTAAATTACCTGCCACAAAGTCAACATCTGAGAAAATATATCTGATCAACAGGACAGAAGTATTCCTTGCTGATGATTTGCAACTGAAAAGAATTTTCTTGAGCTATGATGAGGCTCCATTGTTTGTGTGGTGTCCCCCAAGCGATTGTTTGTCTCCTATAAGACTTTATGAGATATATGAATCCCTTGGAGTGAGAAAGGTTTCTGAATCTGTTGAGCGCAAAGAGAATATGTGTGGCGGACTAGGTGAAGTAAGGGCAATATATGGATTGATTGGCAGGGGTTTAATCAAGATTATTCTGGGTTTTCTTGCTGGTTGGCAGGTGTGTATGTCATTGGAAGAGAGACAATATGCTGCATCTTCAGTTATCCAACTTCGAACGTACAGGATTAACAAACCATATCAATTCATTTACCGACTAATGCGTTCTGGAAGTCCAGCAGTGGAAGTGAGCGTAGCGAAGCTAGTTTACTGGATGAAGAATTCTAAGCAGTTTTTCATTGATAATTCAGGGTACACAAATGGAAAATCTGATCTAGAATTTGTTGCAGCTTTCGCTGACGAACTTGCTGAAGGACTGTTAGTGCAGGCAAGACATTATGCAGCAAGAGAAACATTGAGCCAGATTATCCAATTTGGGTTTCTGATTGATTTCGATGAGGAAAAAGTGGATGGTATGCTGATCAGAGAAAACTTACAGTTGTCTGTGGAAGATCATGAGTTTGTTGATGCTGCTGCCTTCCCCTCATCAACCGAACCTGGTCCTGTTTGTGGAAAGCGGCCATCTATGGAGAGAGATCAAGCAGGCCCTTCCACATCAACTTCTTCAAGCAAGAAGCTGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

36.19

Weight (kDa)

5.7

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 421
Acc36I ACCTGC 2 cut(s) 127, 421
AccI GTMKAC 1 cut(s) 63
AciI CCGC 3 cut(s) 13, 348, 889
AcoI YGGCCR 1 cut(s) 890
AcsI RAATTY 3 cut(s) 201, 592, 650
AcuI CTGAAG 2 cut(s) 456, 702
AfaI GTAC 2 cut(s) 494, 626
AfiI CCNNNNNNNGG 2 cut(s) 19, 881
AgsI TTSAA 2 cut(s) 86, 939
AjnI CCWGG 2 cut(s) 35, 868
AjuI GAANNNNNNNTTGG 2 cut(s) 735, 767
AluBI AGCT 4 cut(s) 213, 574, 662, 949
AluI AGCT 4 cut(s) 213, 574, 662, 949
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 2 cut(s) 267, 448
AoxI GGCC 3 cut(s) 4, 890, 916
ApeKI GCWGC 6 cut(s) 464, 659, 713, 842, 845, 949
ApoI RAATTY 3 cut(s) 201, 592, 650
Asp700I GAANNNNTTC 1 cut(s) 310
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 3 cut(s) 4, 872, 917
AsuHPI GGTGA 1 cut(s) 368
AsuII TTCGAA 1 cut(s) 487
AvaII GGWCC 1 cut(s) 872
BarI GAAGNNNNNNTAC 2 cut(s) 563, 595
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 6 cut(s) 451, 671, 725, 829, 832, 936
BccI CCATC 2 cut(s) 776, 901
BciT130I CCWGG 2 cut(s) 37, 870
BclI TGATCA 2 cut(s) 153, 792
BcoDI GTCTC 2 cut(s) 267, 448
BfaI CTAG 3 cut(s) 353, 575, 647
BfuAI ACCTGC 2 cut(s) 127, 421
BisI GCNGC 7 cut(s) 465, 660, 714, 843, 846, 890, 950
BlsI GCNGC 7 cut(s) 466, 661, 715, 844, 847, 891, 951
Bme1390I CCNGG 2 cut(s) 37, 870
Bme18I GGWCC 1 cut(s) 872
BmgT120I GGNCC 3 cut(s) 4, 872, 917
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 2 cut(s) 37, 870
BmsI GCATC 2 cut(s) 476, 829
Bpu14I TTCGAA 1 cut(s) 487
BpuEI CTTGAG 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 295
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 881
Bse1I ACTGG 2 cut(s) 74, 587
BseBI CCWGG 2 cut(s) 37, 870
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 2 cut(s) 591, 787
BseLI CCNNNNNNNGG 2 cut(s) 19, 881
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 2 cut(s) 74, 587
BseXI GCAGC 6 cut(s) 451, 671, 725, 829, 832, 936
BsgI GTGCAG 1 cut(s) 716
BshFI GGCC 3 cut(s) 6, 892, 918
BsiHKAI GWGCWC 1 cut(s) 44
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 19, 881
BsmAI GTCTC 2 cut(s) 267, 448
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 3 cut(s) 6, 892, 918
Bsp119I TTCGAA 1 cut(s) 487
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 5 cut(s) 153, 643, 792, 823, 907
BspACI CCGC 3 cut(s) 13, 348, 889
BspANI GGCC 3 cut(s) 6, 892, 918
BspCNI CTCAG 1 cut(s) 130
BspHI TCATGA 1 cut(s) 826
BspLI GGNNCC 1 cut(s) 225
BspMI ACCTGC 2 cut(s) 127, 421
BspT104I TTCGAA 1 cut(s) 487
BsrI ACTGG 2 cut(s) 74, 587
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 5 cut(s) 153, 643, 792, 823, 907
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 2 cut(s) 37, 870
Bst4CI ACNGT 2 cut(s) 690, 810
Bst6I CTCTTC 2 cut(s) 81, 444
BstBI TTCGAA 1 cut(s) 487
BstC8I GCNNGC 2 cut(s) 699, 916
BstDEI CTNAG 3 cut(s) 95, 138, 597
BstF5I GGATG 2 cut(s) 591, 787
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 5 cut(s) 156, 646, 795, 826, 910
BstMAI GTCTC 2 cut(s) 267, 448
BstMBI GATC 5 cut(s) 153, 643, 792, 823, 907
BstMWI GCNNNNNNNGC 2 cut(s) 12, 665
BstNI CCWGG 2 cut(s) 37, 870
BstSCI CCNGG 2 cut(s) 35, 868
BstV1I GCAGC 6 cut(s) 451, 671, 725, 829, 832, 936
BsuRI GGCC 3 cut(s) 6, 892, 918
BtsCI GGATG 2 cut(s) 591, 787
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 1 cut(s) 558
BveI ACCTGC 2 cut(s) 127, 421
Cac8I GCNNGC 2 cut(s) 699, 916
CciI TCATGA 1 cut(s) 826
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 3 cut(s) 4, 872, 917
CsiI ACCWGGT 1 cut(s) 868
Csp6I GTAC 2 cut(s) 493, 625
CviAII CATG 1 cut(s) 827
CviQI GTAC 2 cut(s) 493, 625
DdeI CTNAG 3 cut(s) 95, 138, 597
DpnI GATC 5 cut(s) 155, 645, 794, 825, 909
DpnII GATC 5 cut(s) 153, 643, 792, 823, 907
EaeI YGGCCR 1 cut(s) 890
Eam1104I CTCTTC 2 cut(s) 81, 444
EarI CTCTTC 2 cut(s) 81, 444
EciI GGCGGA 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 872
Eco57I CTGAAG 2 cut(s) 456, 702
EcoO109I RGGNCCY 1 cut(s) 917
EcoRI GAATTC 1 cut(s) 592
EcoRII CCWGG 2 cut(s) 35, 868
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 1 cut(s) 830
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 1 cut(s) 228
FatI CATG 1 cut(s) 826
FbaI TGATCA 2 cut(s) 153, 792
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 7 cut(s) 465, 660, 714, 843, 846, 890, 950
FokI GGATG 2 cut(s) 598, 794
Fsp4HI GCNGC 7 cut(s) 465, 660, 714, 843, 846, 890, 950
FspBI CTAG 3 cut(s) 353, 575, 647
GlaI GCGC 1 cut(s) 329
GluI GCNGC 7 cut(s) 465, 660, 714, 843, 846, 890, 950
HaeIII GGCC 3 cut(s) 6, 892, 918
HhaI GCGC 1 cut(s) 330
Hin1II CATG 1 cut(s) 830
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HincII GTYRAC 2 cut(s) 108, 132
HindII GTYRAC 2 cut(s) 108, 132
HinfI GANTC 4 cut(s) 32, 73, 290, 317
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 5 cut(s) 64, 108, 132, 580, 627
Hpy188I TCNGA 6 cut(s) 139, 153, 316, 643, 756, 797
Hpy188III TCNNGA 6 cut(s) 49, 208, 400, 540, 647, 827
Hpy8I GTNNAC 5 cut(s) 64, 108, 132, 580, 627
HpyAV CCTTC 4 cut(s) 55, 677, 859, 930
HpyCH4III ACNGT 2 cut(s) 690, 810
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 5 cut(s) 190, 467, 659, 697, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 665
HpyF3I CTNAG 3 cut(s) 95, 138, 597
HpySE526I ACGT 1 cut(s) 491
Hsp92II CATG 1 cut(s) 830
HspAI GCGC 1 cut(s) 328
Ksp22I TGATCA 2 cut(s) 153, 792
Kzo9I GATC 5 cut(s) 153, 643, 792, 823, 907
LmnI GCTCC 2 cut(s) 47, 229
Lsp1109I GCAGC 6 cut(s) 451, 671, 725, 829, 832, 936
LweI GCATC 2 cut(s) 476, 829
MabI ACCWGGT 1 cut(s) 868
MaeI CTAG 3 cut(s) 353, 575, 647
MaeII ACGT 1 cut(s) 491
MalI GATC 5 cut(s) 155, 645, 794, 825, 909
MboI GATC 5 cut(s) 153, 643, 792, 823, 907
MboII GAAGA 6 cut(s) 98, 461, 462, 601, 833, 927
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 7 cut(s) 113, 201, 515, 592, 616, 650, 743
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 505
MnlI CCTC 3 cut(s) 214, 763, 865
MroXI GAANNNNTTC 1 cut(s) 310
MseI TTAA 2 cut(s) 395, 501
MspR9I CCNGG 2 cut(s) 37, 870
MvaI CCWGG 2 cut(s) 37, 870
MwoI GCNNNNNNNGC 2 cut(s) 12, 665
NdeII GATC 5 cut(s) 153, 643, 792, 823, 907
NlaIII CATG 1 cut(s) 830
NlaIV GGNNCC 1 cut(s) 225
NspV TTCGAA 1 cut(s) 487
PagI TCATGA 1 cut(s) 826
PaqCI CACCTGC 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 3 cut(s) 73, 290, 317
PkrI GCNGC 7 cut(s) 466, 661, 715, 844, 847, 891, 951
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp6I CCWGG 2 cut(s) 35, 868
PspGI CCWGG 2 cut(s) 35, 868
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 3 cut(s) 4, 872, 917
RsaI GTAC 2 cut(s) 494, 626
RsaNI GTAC 2 cut(s) 493, 625
SaqAI TTAA 2 cut(s) 395, 501
SatI GCNGC 7 cut(s) 465, 660, 714, 843, 846, 890, 950
Sau3AI GATC 5 cut(s) 153, 643, 792, 823, 907
Sau96I GGNCC 3 cut(s) 4, 872, 917
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 2 cut(s) 37, 870
SduI GDGCHC 1 cut(s) 44
SexAI ACCWGGT 1 cut(s) 868
SfaNI GCATC 2 cut(s) 476, 829
SfuI TTCGAA 1 cut(s) 487
SinI GGWCC 1 cut(s) 872
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 7 cut(s) 113, 201, 515, 592, 616, 650, 743
SsiI CCGC 3 cut(s) 13, 348, 889
SspMI CTAG 3 cut(s) 353, 575, 647
StyD4I CCNGG 2 cut(s) 35, 868
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 2 cut(s) 690, 810
TaiI ACGT 1 cut(s) 494
TaqI TCGA 2 cut(s) 487, 765
TasI AATT 7 cut(s) 113, 201, 515, 592, 616, 650, 743
TauI GCSGC 1 cut(s) 892
TfiI GAWTC 3 cut(s) 73, 290, 317
Tru1I TTAA 2 cut(s) 395, 501
Tru9I TTAA 2 cut(s) 395, 501
TscAI CASTG 1 cut(s) 558
TseI GCWGC 6 cut(s) 464, 659, 713, 842, 845, 949
TspDTI ATGAA 4 cut(s) 303, 508, 598, 602
TspRI CASTG 1 cut(s) 558
VpaK11BI GGWCC 1 cut(s) 872
XapI RAATTY 3 cut(s) 201, 592, 650
XbaI TCTAGA 1 cut(s) 646
XcmI CCANNNNNNNNNTGG 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 310
XspI CTAG 3 cut(s) 353, 575, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.