RLG00000018698

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
34115081 .. 34116897
1817 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018698

Sequence Viewer

Length: 1737 bp
ATGTCTTCCTCTGTGAAGCCTCAAGAGGCAGTTCGCGTCCTTCCAAACTTCAGGGACCTAGTGGGTGGATTTAAAATAGAAGTTCTGGAGTTTCTAGGTGTGGAATTTTCTAACGACCACTGGTATACAGAATGCATCCAAAGGCTTTGTAGCTCAATTGATGAAAAGGTTACTGGAGTTGACATTATTTCATTGCTAAAGTGCATCAAGAATCTGACGTCAAGATCTCCTGATGATCCCTTACTGAGGGACTTAACCAACAGCATTGCAAGAAGAAAGCGTTTGAAGACCTCGGATTGGACAGATTCATACAAAACACTAGAAGAATCTATCCTGTTTGATCCAGCCTGGGAAAGTATCCTGGATCGGACAAAGATACCAACCATTGATGAGAATTTTTATGGAATTTATATTCTTGTATACAAGAATCAGTTAAGAGATATCGGTGTGAAGGTACATCCTTTGAATGTTTGTTCTCTTCTTTCTGGGATTCTTTCTAAGCTGGCAAAGCCAGACGTTTATTTTGAAGAAACTTTCATAGAAATGATGTACACATTCCTGAACAAGTTCCAGTGGCGTCCAGAAGTGCTAGATGGAACCACACCTGTGTGGGTACCTGATCAAGGATGGTTTACCCCTCAGCACTGTGTACTTCATGACAAAGAAAATCTATTTCTGTCCTTCTTATGTGTGCTTGATGAACATTACAATGAAAAGCTCCTCCCCGTGTTTTCTTCAGCCTTTGGAGTTGCAGAGAATCCTTCTCTCGATCATTACGTAGATCTCTGGAACAAACGGAATGGGAAGGGCCAACTGACTCTGGAAGAGTACTGCTGCTCCTTCTGGAAGTATGTTGTAGACAACTGGAATCCAGAAGTTGAAGAGGCTTTAAAAGGTCTGACAAAACTACCTGCCACAAAGTCGATATCTGAGAAAGTATATCAGATCAACAGGAAAGAAGTATTCCTTGCTGATGACTTTCAACTGAAAAATGTTTTCTTGAGATATGATGAGGCTCCATTATTTATGTGGTTTCCCAGGAACAACTGTTTGTGTACAAGAAGACTTTATGAGATTTATGAATCTCTTGGAGTAAAAAAGGTTTCTGAATCCGTTCAGTACATACCATTTACCAAAATACAGTTGGATCCAGAGAAAGATGTATTAAATGGATTGATTAAAAGGGGTTTAATCAAAATTTTTCTGGGTTTTCTCGCTGGTTCGCAGGTTACTATGCCATTGGAAGATAGAAAAGATGTTGCATCCTCAATTGCTAGACTTAAGGTGTATAAGTTGGACAATCCATATGAATACATTTACAGACTAATGCGATCTGAGAGTACAAAAGCGGATGTGAAAAAAGTGAAGCTAGTTTCCTGGAAGAAGCGGTCTGAGCGGTTGTTCATTGACAGTTCAAGGTACAAAAATGGAAAATTTGATCTAAAATTTGTTGCAGCTTTCGTTGACGAACTTGCTCAAGGACTGTTGGTGCAAGCAAAAGCAAGAGCAACATTGAGCAAGATCATCCAAATTGGGTTTTTGTCTGGTTTTAGTGAGAATGAAGTGGATGTCTTGCTAATGGGAGAAAATTTAGAGTTTTTTGTGGAAGATAAGGAATTTCTTGATGCTGCATTCCCCTCATCAACTGTTCCTGGTCCTGTTTGTGAGAAGTGGTCATCTATGGAGAGAGATCAATCAGACCCTTCATCAACTACTTCAGGAAAGAAGCAGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

579

Amino Acids

66.76

Weight (kDa)

6.06

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 221
Acc36I ACCTGC 2 cut(s) 919, 1216
Acc65I GGTACC 1 cut(s) 613
AccB1I GGYRCC 1 cut(s) 613
AccBSI CCGCTC 1 cut(s) 1396
AccI GTMKAC 3 cut(s) 125, 420, 858
AccII CGCG 1 cut(s) 36
AciI CCGC 3 cut(s) 1349, 1387, 1396
AclWI GGATC 5 cut(s) 230, 335, 372, 1142, 1155
AcsI RAATTY 8 cut(s) 104, 394, 405, 1197, 1433, 1445, 1588, 1616
AcuI CTGAAG 3 cut(s) 34, 720, 1701
AcyI GRCGYC 2 cut(s) 218, 577
AfaI GTAC 9 cut(s) 456, 551, 615, 651, 830, 1057, 1121, 1342, 1421
AfiI CCNNNNNNNGG 3 cut(s) 246, 297, 623
AflII CTTAAG 1 cut(s) 1280
AgsI TTSAA 6 cut(s) 286, 466, 527, 881, 983, 1416
AjnI CCWGG 5 cut(s) 347, 360, 1037, 1376, 1651
AleI CACNNNNGTG 2 cut(s) 605, 607
AluBI AGCT 5 cut(s) 153, 502, 718, 1369, 1457
AluI AGCT 5 cut(s) 153, 502, 718, 1369, 1457
AlwI GGATC 5 cut(s) 230, 335, 372, 1142, 1155
AoxI GGCC 1 cut(s) 808
ApeKI GCWGC 4 cut(s) 834, 1454, 1628, 1729
ApoI RAATTY 8 cut(s) 104, 394, 405, 1197, 1433, 1445, 1588, 1616
ArsI GACNNNNNNTTYG 2 cut(s) 506, 538
Asp700I GAANNNNTTC 2 cut(s) 566, 1113
Asp718I GGTACC 1 cut(s) 613
AspS9I GGNCC 3 cut(s) 55, 808, 1655
AvaII GGWCC 2 cut(s) 55, 1655
BamHI GGATCC 1 cut(s) 1147
BanI GGYRCC 1 cut(s) 613
BbsI GAAGAC 2 cut(s) 293, 1069
BbvCI CCTCAGC 1 cut(s) 639
BbvI GCAGC 3 cut(s) 821, 1466, 1615
BccI CCATC 2 cut(s) 587, 621
BciT130I CCWGG 5 cut(s) 349, 362, 1039, 1378, 1653
BciVI GTATCC 1 cut(s) 368
BclI TGATCA 1 cut(s) 619
BfaI CTAG 6 cut(s) 59, 95, 320, 590, 1275, 1370
BfrI CTTAAG 1 cut(s) 1280
BfuAI ACCTGC 2 cut(s) 919, 1216
BfuI GTATCC 1 cut(s) 368
BglII AGATCT 2 cut(s) 224, 781
BisI GCNGC 4 cut(s) 835, 1455, 1629, 1730
BlsI GCNGC 4 cut(s) 836, 1456, 1630, 1731
BmcAI AGTACT 1 cut(s) 830
Bme1390I CCNGG 5 cut(s) 349, 362, 1039, 1378, 1653
Bme18I GGWCC 2 cut(s) 55, 1655
BmgT120I GGNCC 3 cut(s) 55, 808, 1655
BmiI GGNNCC 5 cut(s) 56, 598, 615, 1017, 1149
BmrFI CCNGG 5 cut(s) 349, 362, 1039, 1378, 1653
BmsI GCATC 4 cut(s) 144, 213, 1271, 1615
BpiI GAAGAC 2 cut(s) 293, 1069
BpmI CTGGAG 2 cut(s) 107, 195
Bpu10I CCTNAGC 1 cut(s) 639
BpuEI CTTGAG 3 cut(s) 6, 1021, 1461
BsaAI YACGTR 1 cut(s) 778
BsaHI GRCGYC 2 cut(s) 218, 577
BsaJI CCNNGG 3 cut(s) 291, 348, 1037
BsaXI ACNNNNNCTCC 2 cut(s) 821, 851
Bsc4I CCNNNNNNNGG 3 cut(s) 246, 297, 623
Bse1I ACTGG 4 cut(s) 125, 178, 571, 869
Bse3DI GCAATG 2 cut(s) 191, 264
BseBI CCWGG 5 cut(s) 349, 362, 1039, 1378, 1653
BseDI CCNNGG 3 cut(s) 291, 348, 1037
BseGI GGATG 7 cut(s) 135, 457, 632, 1262, 1357, 1524, 1573
BseLI CCNNNNNNNGG 3 cut(s) 246, 297, 623
BseMI GCAATG 2 cut(s) 191, 264
BseMII CTCAG 5 cut(s) 236, 653, 921, 1326, 1383
BseNI ACTGG 4 cut(s) 125, 178, 571, 869
BseRI GAGGAG 1 cut(s) 710
BseXI GCAGC 3 cut(s) 821, 1466, 1615
Bsh1236I CGCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 810
BshNI GGYRCC 1 cut(s) 613
BslFI GGGAC 2 cut(s) 68, 263
BslI CCNNNNNNNGG 3 cut(s) 246, 297, 623
BsmFI GGGAC 2 cut(s) 68, 263
BsmI GAATGC 2 cut(s) 137, 1631
BsnI GGCC 1 cut(s) 810
Bsp1407I TGTACA 2 cut(s) 549, 1055
BspACI CCGC 3 cut(s) 1349, 1387, 1396
BspANI GGCC 1 cut(s) 810
BspCNI CTCAG 5 cut(s) 237, 652, 922, 1327, 1384
BspFNI CGCG 1 cut(s) 36
BspHI TCATGA 1 cut(s) 655
BspLI GGNNCC 5 cut(s) 56, 598, 615, 1017, 1149
BspMI ACCTGC 2 cut(s) 919, 1216
BspPI GGATC 5 cut(s) 230, 335, 372, 1142, 1155
BspT107I GGYRCC 1 cut(s) 613
BspTI CTTAAG 1 cut(s) 1280
BsrBI CCGCTC 1 cut(s) 1396
BsrDI GCAATG 2 cut(s) 191, 264
BsrGI TGTACA 2 cut(s) 549, 1055
BsrI ACTGG 4 cut(s) 125, 178, 571, 869
BssECI CCNNGG 3 cut(s) 291, 348, 1037
BssNAI GTATAC 2 cut(s) 126, 421
BssNI GRCGYC 2 cut(s) 218, 577
Bst1107I GTATAC 2 cut(s) 126, 421
Bst2UI CCWGG 5 cut(s) 349, 362, 1039, 1378, 1653
Bst4CI ACNGT 6 cut(s) 647, 1049, 1143, 1412, 1485, 1648
Bst6I CTCTTC 3 cut(s) 483, 819, 876
BstACI GRCGYC 2 cut(s) 218, 577
BstAFI CTTAAG 1 cut(s) 1280
BstAUI TGTACA 2 cut(s) 549, 1055
BstBAI YACGTR 1 cut(s) 778
BstC8I GCNNGC 2 cut(s) 504, 1494
BstDEI CTNAG 6 cut(s) 245, 498, 639, 930, 1335, 1392
BstENI CCTNNNNNAGG 2 cut(s) 244, 621
BstF5I GGATG 7 cut(s) 135, 457, 632, 1262, 1357, 1524, 1573
BstFNI CGCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 2 cut(s) 508, 1393
BstNI CCWGG 5 cut(s) 349, 362, 1039, 1378, 1653
BstSCI CCNGG 5 cut(s) 347, 360, 1037, 1376, 1651
BstSNI TACGTA 1 cut(s) 778
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 3 cut(s) 821, 1466, 1615
BstV2I GAAGAC 2 cut(s) 293, 1069
BstX2I RGATCY 3 cut(s) 224, 781, 1147
BstYI RGATCY 3 cut(s) 224, 781, 1147
BstZ17I GTATAC 2 cut(s) 126, 421
BsuI GTATCC 1 cut(s) 368
BsuRI GGCC 1 cut(s) 810
BtsCI GGATG 7 cut(s) 135, 457, 632, 1262, 1357, 1524, 1573
BtsIMutI CAGTG 3 cut(s) 118, 578, 643
BveI ACCTGC 2 cut(s) 919, 1216
Cac8I GCNNGC 2 cut(s) 504, 1494
CciI TCATGA 1 cut(s) 655
Cfr13I GGNCC 3 cut(s) 55, 808, 1655
CseI GACGC 2 cut(s) 25, 566
Csp6I GTAC 9 cut(s) 455, 550, 614, 650, 829, 1056, 1120, 1341, 1420
CviAII CATG 1 cut(s) 656
CviQI GTAC 9 cut(s) 455, 550, 614, 650, 829, 1056, 1120, 1341, 1420
DdeI CTNAG 6 cut(s) 245, 498, 639, 930, 1335, 1392
DraI TTTAAA 2 cut(s) 73, 891
Eam1104I CTCTTC 3 cut(s) 483, 819, 876
EarI CTCTTC 3 cut(s) 483, 819, 876
Eco105I TACGTA 1 cut(s) 778
Eco32I GATATC 2 cut(s) 442, 927
Eco47I GGWCC 2 cut(s) 55, 1655
Eco57I CTGAAG 3 cut(s) 34, 720, 1701
EcoNI CCTNNNNNAGG 2 cut(s) 244, 621
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 5 cut(s) 347, 360, 1037, 1376, 1651
EcoRV GATATC 2 cut(s) 442, 927
EcoT22I ATGCAT 1 cut(s) 137
FaeI CATG 1 cut(s) 659
FalI AAGNNNNNCTT 2 cut(s) 951, 983
FaqI GGGAC 2 cut(s) 68, 263
FatI CATG 1 cut(s) 655
FauNDI CATATG 1 cut(s) 1306
FbaI TGATCA 1 cut(s) 619
FblI GTMKAC 3 cut(s) 125, 420, 858
Fnu4HI GCNGC 4 cut(s) 835, 1455, 1629, 1730
FokI GGATG 7 cut(s) 122, 444, 639, 1249, 1364, 1511, 1580
Fsp4HI GCNGC 4 cut(s) 835, 1455, 1629, 1730
FspBI CTAG 6 cut(s) 59, 95, 320, 590, 1275, 1370
GluI GCNGC 4 cut(s) 835, 1455, 1629, 1730
GsuI CTGGAG 2 cut(s) 107, 195
HaeIII GGCC 1 cut(s) 810
HgaI GACGC 2 cut(s) 25, 566
Hin1I GRCGYC 2 cut(s) 218, 577
Hin1II CATG 1 cut(s) 659
HincII GTYRAC 2 cut(s) 181, 1465
HindII GTYRAC 2 cut(s) 181, 1465
Hpy166II GTNNAC 9 cut(s) 126, 181, 421, 552, 633, 650, 859, 1056, 1465
Hpy8I GTNNAC 9 cut(s) 126, 181, 421, 552, 633, 650, 859, 1056, 1465
HpyAV CCTTC 7 cut(s) 50, 445, 691, 771, 799, 850, 1713
HpyCH4III ACNGT 6 cut(s) 647, 1049, 1143, 1412, 1485, 1648
HpyCH4IV ACGT 3 cut(s) 218, 516, 777
HpyCH4V TGCA 8 cut(s) 135, 204, 269, 752, 1262, 1454, 1492, 1631
HpyF10VI GCNNNNNNNGC 2 cut(s) 508, 1393
HpyF3I CTNAG 6 cut(s) 245, 498, 639, 930, 1335, 1392
HpySE526I ACGT 3 cut(s) 218, 516, 777
Hsp92I GRCGYC 2 cut(s) 218, 577
Hsp92II CATG 1 cut(s) 659
KpnI GGTACC 1 cut(s) 617
Ksp22I TGATCA 1 cut(s) 619
LmnI GCTCC 3 cut(s) 723, 842, 1021
Lsp1109I GCAGC 3 cut(s) 821, 1466, 1615
LweI GCATC 4 cut(s) 144, 213, 1271, 1615
MaeI CTAG 6 cut(s) 59, 95, 320, 590, 1275, 1370
MaeII ACGT 3 cut(s) 218, 516, 777
MaeIII GTNAC 2 cut(s) 169, 1228
MbiI CCGCTC 1 cut(s) 1396
MfeI CAATTG 2 cut(s) 156, 1269
MflI RGATCY 3 cut(s) 224, 781, 1147
MlyI GAGTC 1 cut(s) 811
MmeI TCCRAC 2 cut(s) 1125, 1275
Mph1103I ATGCAT 1 cut(s) 137
MroXI GAANNNNTTC 2 cut(s) 566, 1113
MseI TTAA 8 cut(s) 72, 254, 434, 890, 1166, 1179, 1190, 1281
MslI CAYNNNNRTG 4 cut(s) 542, 605, 607, 708
MspCI CTTAAG 1 cut(s) 1280
MspR9I CCNGG 5 cut(s) 349, 362, 1039, 1378, 1653
MunI CAATTG 2 cut(s) 156, 1269
Mva1269I GAATGC 2 cut(s) 137, 1631
MvaI CCWGG 5 cut(s) 349, 362, 1039, 1378, 1653
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 2 cut(s) 508, 1393
NdeI CATATG 1 cut(s) 1306
NlaIII CATG 1 cut(s) 659
NlaIV GGNNCC 5 cut(s) 56, 598, 615, 1017, 1149
NsiI ATGCAT 1 cut(s) 137
OliI CACNNNNGTG 2 cut(s) 605, 607
PagI TCATGA 1 cut(s) 655
PcsI WCGNNNNNNNCGW 1 cut(s) 774
PctI GAATGC 2 cut(s) 137, 1631
PdmI GAANNNNTTC 2 cut(s) 566, 1113
PfeI GAWTC 9 cut(s) 211, 305, 326, 427, 490, 757, 868, 1082, 1109
PfoI TCCNGGA 2 cut(s) 360, 1376
PkrI GCNGC 4 cut(s) 836, 1456, 1630, 1731
PleI GAGTC 1 cut(s) 811
PpsI GAGTC 1 cut(s) 811
Ppu21I YACGTR 1 cut(s) 778
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 5 cut(s) 347, 360, 1037, 1376, 1651
PspGI CCWGG 5 cut(s) 347, 360, 1037, 1376, 1651
PspN4I GGNNCC 5 cut(s) 56, 598, 615, 1017, 1149
PspPI GGNCC 3 cut(s) 55, 808, 1655
PspPPI RGGWCCY 1 cut(s) 55
PsuI RGATCY 3 cut(s) 224, 781, 1147
RsaI GTAC 9 cut(s) 456, 551, 615, 651, 830, 1057, 1121, 1342, 1421
RsaNI GTAC 9 cut(s) 455, 550, 614, 650, 829, 1056, 1120, 1341, 1420
RseI CAYNNNNRTG 4 cut(s) 542, 605, 607, 708
SaqAI TTAA 8 cut(s) 72, 254, 434, 890, 1166, 1179, 1190, 1281
SatI GCNGC 4 cut(s) 835, 1455, 1629, 1730
Sau96I GGNCC 3 cut(s) 55, 808, 1655
ScaI AGTACT 1 cut(s) 830
SchI GAGTC 1 cut(s) 811
ScrFI CCNGG 5 cut(s) 349, 362, 1039, 1378, 1653
SfaNI GCATC 4 cut(s) 144, 213, 1271, 1615
SinI GGWCC 2 cut(s) 55, 1655
SmiMI CAYNNNNRTG 4 cut(s) 542, 605, 607, 708
SmlI CTYRAG 4 cut(s) 21, 1000, 1280, 1476
SmoI CTYRAG 4 cut(s) 21, 1000, 1280, 1476
SnaBI TACGTA 1 cut(s) 778
SsiI CCGC 3 cut(s) 1349, 1387, 1396
SspMI CTAG 6 cut(s) 59, 95, 320, 590, 1275, 1370
StyD4I CCNGG 5 cut(s) 347, 360, 1037, 1376, 1651
TaaI ACNGT 6 cut(s) 647, 1049, 1143, 1412, 1485, 1648
TaiI ACGT 3 cut(s) 221, 519, 780
TaqI TCGA 2 cut(s) 768, 923
TatI WGTACW 6 cut(s) 549, 649, 828, 1055, 1119, 1340
TfiI GAWTC 9 cut(s) 211, 305, 326, 427, 490, 757, 868, 1082, 1109
Tru1I TTAA 8 cut(s) 72, 254, 434, 890, 1166, 1179, 1190, 1281
Tru9I TTAA 8 cut(s) 72, 254, 434, 890, 1166, 1179, 1190, 1281
TscAI CASTG 3 cut(s) 125, 578, 650
TseI GCWGC 4 cut(s) 834, 1454, 1628, 1729
TspGWI ACGGA 2 cut(s) 811, 1102
TspRI CASTG 3 cut(s) 125, 578, 650
Vha464I CTTAAG 1 cut(s) 1280
VpaK11BI GGWCC 2 cut(s) 55, 1655
XagI CCTNNNNNAGG 2 cut(s) 244, 621
XapI RAATTY 8 cut(s) 104, 394, 405, 1197, 1433, 1445, 1588, 1616
XcmI CCANNNNNNNNNTGG 2 cut(s) 1026, 1141
XmiI GTMKAC 3 cut(s) 125, 420, 858
XmnI GAANNNNTTC 2 cut(s) 566, 1113
XspI CTAG 6 cut(s) 59, 95, 320, 590, 1275, 1370
ZraI GACGTC 1 cut(s) 219
ZrmI AGTACT 1 cut(s) 830
Zsp2I ATGCAT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.