Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002858

Physical Location & Seq

Genomic Coordinates Forward (+)

34550398 .. 34553317

Gene Structure 2920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG207900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGAAGTTGTTTGGACCTCGAAATTCATTTGTGGAACAAAATTATGTTGATATTGGGGATGTTTATGTTGAAAGCAGCCTGTTTCTAGGAGACTCTGTGCGTGAGAAAGAGCTTCTTTGTTTTGTTTGCAAGTATTGCAAAGCTGTGGATTTACTAGAGTTGTGTCCTCCAGATGTGGTATTACGGATAGCATCTTCTGAACTGTCAAGTGAACATGCCTTTTTGCTGCTTGATTGGATCAGATTACTACGAACTAAAGGTTCATATATACCTACAAAGTTTATTGAATCCATTCGAAATGGAAAATGGATGAAAACATACCTGGGTTATATTTCTCCAAGACAGGCGATACTTCCAGATGAAACTGGGAAATCTATTTTTGATATGATGAAGCATGTTTTGGTAGATATCTCCATTTTAGATAAGGAATTTTATAAGAATCGAATCAGTTCTTATCAAGATGAATTGAAATTTCTTGGTGTGGGGCTTGCATCAAATGATGTGTGGAGGCTGGTTAGTAATTGCTTCGAGTCTTTTCTTTCTCCTAGAATGAACAAAGAGTGCACATTTTCTTTGCTGTCTTTCATTAGTTTCTCTCGACAGAGAAATATGGTTGACGAGGATTGGCTGGCTGTTATGAAGGAGAAGAAGTGGCTTAAGACTCTTGAGGGTTATAATGCTCCGAAGGGATCTATTCTCTTGCAATCTGCAATAGAGGCTGAAACCTGTTTGAAAATTACAAACCTTCCTGTTGTTGATGAAGCATTCTATGGAGGTGAACCAGGCTCTTTCATATCAGAATTGAGGCAACTTGGAGTTGAAAGTGATACAGTGGAAGTGCAAAAGTTAATTGCAGCGAATGGCAGGGAAAAAGTTGATCCCAGAGCCAAATTAATTCAGAAGGGTCTAATCAGAATTGTTCTGGGTTTTCTTGCCCGTCCTCAGATAAATACATCCTTAAATCAGAGACACAAGGCTGCAAAATCGTTACTTAAACTGTCAGTTTATAAGAGTGACAAAAAAATTCATGTCTGCTATAGACTCATGCCATCCGTGAGTGCAACAATTGAAGTAGAAAAGATTAAGCTCGTACTTTGGGAGAAGAATTTGCAGCGGTTTCTCGTTGATAAAGAAGGCTATGAAGATGGAAAAACTGATCTAGAGTTTGTTACTTCTTTTTCGGACGAACTAGCGCAAGGGTTGTTGGCACAAGGAACAGCTGCTGCAGTAGCAGATTCTTTGATGAGCAAGATTATCCAGATGGGATTCCTGTTCGATTTTGATGAAAGTAAAGTGGAGTTTCTGCTGATGAGAGAAAATTTAGAGTTACTGGAGGAGGATATTAATTTTCTTGATGCTGCATTCCTCAAGTCAGAAGAGCCTGCTACTAAGAGTCGAAAGCGTTTATATAAGAAGTTAAACCAATTAGGCACTCCCACACCAATTACCTCATGCAAGAAGCATTGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

490

Amino Acids

55.83

Weight (kDa)

7.47

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002858)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13480
pyrus_communis	pycom08g06270
rosa_chinensis	RchiOBHm_Chr2g0086071 RchiOBHm_Chr2g0086081 RchiOBHm_Chr2g0086101 RchiOBHm_Chr2g0122661
rosa_laevigata	RLG00000015740 RLG00000015743 RLG00000018698 RLG00000018704
rosa_multiflora	Rmu_sc0003133.1_g000025 Rmu_sc0006012.1_g000008 Rmu_sc0017765.1_g000003 Rmu_sc0020050.1_g000004 Rmu_ssc0000041.1_g000003 Rmu_ssc0000355.1_g000017
rosa_roxburghii	Rroxscaffold_2G00106820 Rroxscaffold_2G00121390 Rroxscaffold_2G00154810 Rroxscaffold_6G00408820
rosa_rugosa	Rorug01G0465700 Rorug01G0465700 Rorug02G0241200
rosa_samantha	Rh2AG014900 Rh2AG015300 Rh2AG298900 Rh2BG015400 Rh2BG307800 Rh2CG015900 Rh2CG016300 Rh2CG285900 Rh2DG017200 Rh2DG017400 Rh4BG170400 Rh6CG207900 Rh6DG198200
rosa_wichuraiana	Rw2G001310 Rw2G001330 Rw2G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	435, 675, 1008
AciI	CCGC	1 cut(s)	1114
AclWI	GGATC	3 cut(s)	245, 697, 872
AcsI	RAATTY	6 cut(s)	22, 428, 470, 1023, 1105, 1318
AfaI	GTAC	1 cut(s)	1092
AflII	CTTAAG	1 cut(s)	656
AgsI	TTSAA	6 cut(s)	71, 287, 469, 733, 821, 1070
AjnI	CCWGG	2 cut(s)	321, 781
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AluBI	AGCT	4 cut(s)	112, 143, 1087, 1220
AluI	AGCT	4 cut(s)	112, 143, 1087, 1220
Alw21I	GWGCWC	1 cut(s)	566
Alw26I	GTCTC	2 cut(s)	84, 961
Alw44I	GTGCAC	1 cut(s)	562
AlwI	GGATC	3 cut(s)	245, 697, 872
AlwNI	CAGNNNCTG	1 cut(s)	1223
ApaLI	GTGCAC	1 cut(s)	562
ApeKI	GCWGC	8 cut(s)	75, 226, 854, 977, 1111, 1220, 1223, 1358
ApoI	RAATTY	6 cut(s)	22, 428, 470, 1023, 1105, 1318
AseI	ATTAAT	2 cut(s)	893, 1344
Asp700I	GAANNNNTTC	2 cut(s)	291, 448
AspLEI	GCGC	1 cut(s)	1195
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	788
AsuII	TTCGAA	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	566
BbvI	GCAGC	8 cut(s)	87, 213, 866, 964, 1123, 1207, 1210, 1345
BccI	CCATC	3 cut(s)	1057, 1139, 1255
BciT130I	CCWGG	2 cut(s)	323, 783
BcoDI	GTCTC	2 cut(s)	84, 961
BfaI	CTAG	5 cut(s)	86, 155, 546, 1160, 1190
BfmI	CTRYAG	2 cut(s)	1036, 1224
BfrI	CTTAAG	1 cut(s)	656
BisI	GCNGC	8 cut(s)	76, 227, 855, 978, 1112, 1221, 1224, 1359
BlsI	GCNGC	8 cut(s)	77, 228, 856, 979, 1113, 1222, 1225, 1360
Bme1390I	CCNGG	2 cut(s)	323, 783
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmrFI	CCNGG	2 cut(s)	323, 783
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	3 cut(s)	200, 500, 1345
BmuI	ACTGGG	1 cut(s)	375
BpmI	CTGGAG	2 cut(s)	153, 1352
Bpu14I	TTCGAA	1 cut(s)	295
BpuEI	CTTGAG	2 cut(s)	686, 1352
BsaJI	CCNNGG	1 cut(s)	322
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 635, 665
Bse1I	ACTGG	2 cut(s)	370, 1335
BseBI	CCWGG	2 cut(s)	323, 783
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	4 cut(s)	64, 315, 953, 1049
BseMII	CTCAG	1 cut(s)	956
BseNI	ACTGG	2 cut(s)	370, 1335
BseRI	GAGGAG	1 cut(s)	1349
BseSI	GKGCMC	1 cut(s)	566
BseXI	GCAGC	8 cut(s)	87, 213, 866, 964, 1123, 1207, 1210, 1345
BsiHKAI	GWGCWC	1 cut(s)	566
BsmAI	GTCTC	2 cut(s)	84, 961
BsmI	GAATGC	2 cut(s)	764, 1361
Bsp119I	TTCGAA	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	566
Bsp143I	GATC	4 cut(s)	237, 689, 877, 1156
BspACI	CCGC	1 cut(s)	1114
BspCNI	CTCAG	1 cut(s)	955
BspMAI	CTGCAG	1 cut(s)	1228
BspPI	GGATC	3 cut(s)	245, 697, 872
BspQI	GCTCTTC	1 cut(s)	1371
BspT104I	TTCGAA	1 cut(s)	295
BspTI	CTTAAG	1 cut(s)	656
BsrI	ACTGG	2 cut(s)	370, 1335
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	4 cut(s)	237, 689, 877, 1156
Bst2UI	CCWGG	2 cut(s)	323, 783
Bst4CI	ACNGT	3 cut(s)	204, 832, 999
Bst6I	CTCTTC	1 cut(s)	1371
BstAFI	CTTAAG	1 cut(s)	656
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstBI	TTCGAA	1 cut(s)	295
BstC8I	GCNNGC	3 cut(s)	489, 630, 1383
BstDEI	CTNAG	2 cut(s)	942, 1389
BstF5I	GGATG	4 cut(s)	64, 315, 953, 1049
BstHHI	GCGC	1 cut(s)	1195
BstKTI	GATC	4 cut(s)	240, 692, 880, 1159
BstMAI	GTCTC	2 cut(s)	84, 961
BstMBI	GATC	4 cut(s)	237, 689, 877, 1156
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 716, 1229
BstNI	CCWGG	2 cut(s)	323, 783
BstNSI	RCATGY	2 cut(s)	218, 398
BstSCI	CCNGG	2 cut(s)	321, 781
BstSFI	CTRYAG	2 cut(s)	1036, 1224
BstSLI	GKGCMC	1 cut(s)	566
BstV1I	GCAGC	8 cut(s)	87, 213, 866, 964, 1123, 1207, 1210, 1345
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
BtsCI	GGATG	4 cut(s)	64, 315, 953, 1049
BtsIMutI	CAGTG	1 cut(s)	837
Cac8I	GCNNGC	3 cut(s)	489, 630, 1383
CaiI	CAGNNNCTG	1 cut(s)	1223
CfoI	GCGC	1 cut(s)	1195
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	1091
CviAII	CATG	5 cut(s)	215, 395, 1028, 1045, 1452
CviQI	GTAC	1 cut(s)	1091
DdeI	CTNAG	2 cut(s)	942, 1389
DpnI	GATC	4 cut(s)	239, 691, 879, 1158
DpnII	GATC	4 cut(s)	237, 689, 877, 1156
Eam1104I	CTCTTC	1 cut(s)	1371
EarI	CTCTTC	1 cut(s)	1371
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	321, 781
EcoRV	GATATC	1 cut(s)	409
FaeI	CATG	5 cut(s)	218, 398, 1031, 1048, 1455
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FatI	CATG	5 cut(s)	214, 394, 1027, 1044, 1451
Fnu4HI	GCNGC	8 cut(s)	76, 227, 855, 978, 1112, 1221, 1224, 1359
FokI	GGATG	4 cut(s)	71, 322, 940, 1036
Fsp4HI	GCNGC	8 cut(s)	76, 227, 855, 978, 1112, 1221, 1224, 1359
FspBI	CTAG	5 cut(s)	86, 155, 546, 1160, 1190
GlaI	GCGC	1 cut(s)	1194
GluI	GCNGC	8 cut(s)	76, 227, 855, 978, 1112, 1221, 1224, 1359
GsuI	CTGGAG	2 cut(s)	153, 1352
HhaI	GCGC	1 cut(s)	1195
Hin1II	CATG	5 cut(s)	218, 398, 1031, 1048, 1455
Hin6I	GCGC	1 cut(s)	1193
HinP1I	GCGC	1 cut(s)	1193
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HphI	GGTGA	1 cut(s)	788
Hpy166II	GTNNAC	4 cut(s)	212, 564, 616, 779
Hpy188III	TCNNGA	8 cut(s)	170, 356, 458, 597, 665, 1160, 1258, 1352
Hpy8I	GTNNAC	4 cut(s)	212, 564, 616, 779
HpyAV	CCTTC	5 cut(s)	634, 679, 755, 895, 1127
HpyCH4III	ACNGT	3 cut(s)	204, 832, 999
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 716, 1229
HpyF3I	CTNAG	2 cut(s)	942, 1389
Hsp92II	CATG	5 cut(s)	218, 398, 1031, 1048, 1455
HspAI	GCGC	1 cut(s)	1193
Kzo9I	GATC	4 cut(s)	237, 689, 877, 1156
LguI	GCTCTTC	1 cut(s)	1371
LmnI	GCTCC	1 cut(s)	685
Lsp1109I	GCAGC	8 cut(s)	87, 213, 866, 964, 1123, 1207, 1210, 1345
LweI	GCATC	3 cut(s)	200, 500, 1345
MaeI	CTAG	5 cut(s)	86, 155, 546, 1160, 1190
MaeIII	GTNAC	4 cut(s)	987, 1013, 1168, 1326
MalI	GATC	4 cut(s)	239, 691, 879, 1158
MboI	GATC	4 cut(s)	237, 689, 877, 1156
MboII	GAAGA	5 cut(s)	186, 658, 1114, 1154, 1388
MfeI	CAATTG	1 cut(s)	1065
MflI	RGATCY	1 cut(s)	689
MhlI	GDGCHC	1 cut(s)	566
MlyI	GAGTC	5 cut(s)	86, 539, 655, 1035, 1402
MroXI	GAANNNNTTC	2 cut(s)	291, 448
MseI	TTAA	8 cut(s)	657, 848, 893, 959, 993, 1083, 1344, 1418
MspA1I	CMGCKG	2 cut(s)	1114, 1220
MspCI	CTTAAG	1 cut(s)	656
MspR9I	CCNGG	2 cut(s)	323, 783
MunI	CAATTG	1 cut(s)	1065
Mva1269I	GAATGC	2 cut(s)	764, 1361
MvaI	CCWGG	2 cut(s)	323, 783
MwoI	GCNNNNNNNGC	3 cut(s)	135, 716, 1229
NdeII	GATC	4 cut(s)	237, 689, 877, 1156
NlaIII	CATG	5 cut(s)	218, 398, 1031, 1048, 1455
NmuCI	GTSAC	1 cut(s)	1013
NspI	RCATGY	2 cut(s)	218, 398
NspV	TTCGAA	1 cut(s)	295
PciSI	GCTCTTC	1 cut(s)	1371
PctI	GAATGC	2 cut(s)	764, 1361
PdmI	GAANNNNTTC	2 cut(s)	291, 448
PfeI	GAWTC	5 cut(s)	287, 439, 444, 1235, 1266
PkrI	GCNGC	8 cut(s)	77, 228, 856, 979, 1113, 1222, 1225, 1360
PleI	GAGTC	5 cut(s)	86, 538, 655, 1035, 1401
PpsI	GAGTC	5 cut(s)	86, 538, 655, 1035, 1401
PshBI	ATTAAT	2 cut(s)	893, 1344
PsiI	TTATAA	3 cut(s)	435, 675, 1008
Psp6I	CCWGG	2 cut(s)	321, 781
PspGI	CCWGG	2 cut(s)	321, 781
PspPI	GGNCC	1 cut(s)	14
PstI	CTGCAG	1 cut(s)	1228
PstNI	CAGNNNCTG	1 cut(s)	1223
PsuI	RGATCY	1 cut(s)	689
PvuII	CAGCTG	1 cut(s)	1220
RsaI	GTAC	1 cut(s)	1092
RsaNI	GTAC	1 cut(s)	1091
SapI	GCTCTTC	1 cut(s)	1371
SaqAI	TTAA	8 cut(s)	657, 848, 893, 959, 993, 1083, 1344, 1418
SatI	GCNGC	8 cut(s)	76, 227, 855, 978, 1112, 1221, 1224, 1359
Sau3AI	GATC	4 cut(s)	237, 689, 877, 1156
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	5 cut(s)	86, 539, 655, 1035, 1402
ScrFI	CCNGG	2 cut(s)	323, 783
SduI	GDGCHC	1 cut(s)	566
SfaNI	GCATC	3 cut(s)	200, 500, 1345
SfcI	CTRYAG	2 cut(s)	1036, 1224
SfuI	TTCGAA	1 cut(s)	295
SinI	GGWCC	1 cut(s)	14
SmlI	CTYRAG	3 cut(s)	656, 665, 1367
SmoI	CTYRAG	3 cut(s)	656, 665, 1367
SsiI	CCGC	1 cut(s)	1114
SspMI	CTAG	5 cut(s)	86, 155, 546, 1160, 1190
StyD4I	CCNGG	2 cut(s)	321, 781
TaaI	ACNGT	3 cut(s)	204, 832, 999
TaqI	TCGA	7 cut(s)	19, 295, 442, 528, 598, 1275, 1396
TfiI	GAWTC	5 cut(s)	287, 439, 444, 1235, 1266
Tru1I	TTAA	8 cut(s)	657, 848, 893, 959, 993, 1083, 1344, 1418
Tru9I	TTAA	8 cut(s)	657, 848, 893, 959, 993, 1083, 1344, 1418
TscAI	CASTG	1 cut(s)	837
TseFI	GTSAC	1 cut(s)	1013
TseI	GCWGC	8 cut(s)	75, 226, 854, 977, 1111, 1220, 1223, 1358
Tsp45I	GTSAC	1 cut(s)	1013
TspGWI	ACGGA	2 cut(s)	199, 1042
TspRI	CASTG	1 cut(s)	837
Vha464I	CTTAAG	1 cut(s)	656
VneI	GTGCAC	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	14
VspI	ATTAAT	2 cut(s)	893, 1344
XapI	RAATTY	6 cut(s)	22, 428, 470, 1023, 1105, 1318
XbaI	TCTAGA	1 cut(s)	1159
XceI	RCATGY	2 cut(s)	218, 398
XmnI	GAANNNNTTC	2 cut(s)	291, 448
XspI	CTAG	5 cut(s)	86, 155, 546, 1160, 1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.