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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g13480 |
| pyrus_communis | pycom08g06270 |
| rosa_chinensis | RchiOBHm_Chr2g0086071 RchiOBHm_Chr2g0086081 RchiOBHm_Chr2g0086101 RchiOBHm_Chr2g0122661 |
| rosa_laevigata | RLG00000015740 RLG00000015743 RLG00000018698 RLG00000018704 |
| rosa_multiflora | Rmu_sc0003133.1_g000025 Rmu_sc0006012.1_g000008 Rmu_sc0017765.1_g000003 Rmu_sc0020050.1_g000004 Rmu_ssc0000041.1_g000003 Rmu_ssc0000355.1_g000017 |
| rosa_roxburghii | Rroxscaffold_2G00106820 Rroxscaffold_2G00121390 Rroxscaffold_2G00154810 Rroxscaffold_6G00408820 |
| rosa_rugosa | Rorug01G0465700 Rorug01G0465700 Rorug02G0241200 |
| rosa_samantha | Rh2AG014900 Rh2AG015300 Rh2AG298900 Rh2BG015400 Rh2BG307800 Rh2CG015900 Rh2CG016300 Rh2CG285900 Rh2DG017200 Rh2DG017400 Rh4BG170400 Rh6CG207900 Rh6DG198200 |
| rosa_wichuraiana | Rw2G001310 Rw2G001330 Rw2G023820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1758, 1994 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 429 |
| Acc36I | ACCTGC | 4 cut(s) | 973, 1279, 1722, 2398 |
| AccBSI | CCGCTC | 1 cut(s) | 3217 |
| AccI | GTMKAC | 2 cut(s) | 1153, 1577 |
| AccII | CGCG | 2 cut(s) | 786, 3222 |
| AccIII | TCCGGA | 2 cut(s) | 108, 2716 |
| AciI | CCGC | 5 cut(s) | 786, 2615, 3154, 3215, 3220 |
| AclWI | GGATC | 5 cut(s) | 788, 1685, 1781, 1898, 2918 |
| AcsI | RAATTY | 8 cut(s) | 119, 1182, 1418, 1840, 1857, 1935, 2930, 3076 |
| AcuI | CTGAAG | 8 cut(s) | 710, 819, 1227, 1559, 2193, 2205, 2430, 2486 |
| AcvI | CACGTG | 1 cut(s) | 875 |
| AcyI | GRCGYC | 2 cut(s) | 2032, 2273 |
| AfaI | GTAC | 7 cut(s) | 777, 783, 1372, 1526, 1868, 2118, 2827 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 1035, 1084, 1612, 2062, 2087, 2090, 2632 |
| AflII | CTTAAG | 1 cut(s) | 817 |
| AflIII | ACRYGT | 2 cut(s) | 778, 874 |
| AhlI | ACTAGT | 1 cut(s) | 833 |
| AjnI | CCWGG | 5 cut(s) | 365, 1793, 2086, 2640, 2861 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 365, 397 |
| Alw21I | GWGCWC | 2 cut(s) | 325, 2193 |
| Alw26I | GTCTC | 6 cut(s) | 415, 1230, 1601, 2354, 2737, 3161 |
| AlwI | GGATC | 5 cut(s) | 788, 1685, 1781, 1898, 2918 |
| Aor13HI | TCCGGA | 2 cut(s) | 108, 2716 |
| AoxI | GGCC | 2 cut(s) | 397, 3181 |
| ApeKI | GCWGC | 8 cut(s) | 193, 1387, 2310, 2753, 2977, 2993, 2996, 3116 |
| ApoI | RAATTY | 8 cut(s) | 119, 1182, 1418, 1840, 1857, 1935, 2930, 3076 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 152, 184 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1776, 1803, 1860, 2474 |
| AspS9I | GGNCC | 7 cut(s) | 111, 397, 1426, 1513, 2638, 2714, 3182 |
| AsuHPI | GGTGA | 3 cut(s) | 920, 1018, 1275 |
| AvaII | GGWCC | 5 cut(s) | 111, 1426, 1513, 2638, 2714 |
| BanII | GRGCYC | 1 cut(s) | 2193 |
| BauI | CACGAG | 1 cut(s) | 1143 |
| BbrPI | CACGTG | 1 cut(s) | 875 |
| BbsI | GAAGAC | 2 cut(s) | 1748, 2557 |
| Bbv12I | GWGCWC | 2 cut(s) | 325, 2193 |
| BbvCI | CCTCAGC | 1 cut(s) | 2106 |
| BbvI | GCAGC | 8 cut(s) | 205, 1374, 2297, 2740, 2989, 3005, 3008, 3103 |
| BceAI | ACGGC | 1 cut(s) | 695 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 182, 216 |
| BciT130I | CCWGG | 5 cut(s) | 367, 1795, 2088, 2642, 2863 |
| BciVI | GTATCC | 2 cut(s) | 1205, 2064 |
| BclI | TGATCA | 1 cut(s) | 2424 |
| BcoDI | GTCTC | 6 cut(s) | 415, 1230, 1601, 2354, 2737, 3161 |
| BcuI | ACTAGT | 1 cut(s) | 833 |
| BfaI | CTAG | 8 cut(s) | 627, 834, 1326, 1430, 1547, 2447, 2547, 2855 |
| BfmI | CTRYAG | 1 cut(s) | 2905 |
| BfrI | CTTAAG | 1 cut(s) | 817 |
| BfuAI | ACCTGC | 4 cut(s) | 973, 1279, 1722, 2398 |
| BfuI | GTATCC | 2 cut(s) | 1205, 2064 |
| BisI | GCNGC | 9 cut(s) | 194, 1388, 2311, 2754, 2978, 2994, 2997, 3117, 3215 |
| BlpI | GCTNAGC | 1 cut(s) | 87 |
| BlsI | GCNGC | 9 cut(s) | 195, 1389, 2312, 2755, 2979, 2995, 2998, 3118, 3216 |
| Bme1390I | CCNGG | 5 cut(s) | 367, 1795, 2088, 2642, 2863 |
| Bme18I | GGWCC | 5 cut(s) | 111, 1426, 1513, 2638, 2714 |
| BmgT120I | GGNCC | 7 cut(s) | 111, 397, 1426, 1513, 2638, 2714, 3182 |
| BmiI | GGNNCC | 4 cut(s) | 113, 273, 615, 1427 |
| BmrFI | CCNGG | 5 cut(s) | 367, 1795, 2088, 2642, 2863 |
| BmrI | ACTGGG | 1 cut(s) | 321 |
| BmsI | GCATC | 5 cut(s) | 1204, 1387, 1510, 2644, 2794 |
| BmuI | ACTGGG | 1 cut(s) | 321 |
| BpiI | GAAGAC | 2 cut(s) | 1748, 2557 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 438, 470, 2297, 2329 |
| BpmI | CTGGAG | 2 cut(s) | 339, 2070 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2106, 2480 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 87 |
| BpuEI | CTTGAG | 6 cut(s) | 141, 1208, 1260, 1377, 1385, 2946 |
| BsaAI | YACGTR | 1 cut(s) | 875 |
| BsaHI | GRCGYC | 2 cut(s) | 2032, 2273 |
| BsaI | GGTCTC | 1 cut(s) | 1601 |
| BsaJI | CCNNGG | 6 cut(s) | 366, 1083, 1591, 1695, 1794, 2575 |
| BsaWI | WCCGGW | 2 cut(s) | 108, 2716 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 432, 462 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 1035, 1084, 1612, 2062, 2087, 2090, 2632 |
| Bse1I | ACTGG | 4 cut(s) | 316, 322, 2033, 2345 |
| Bse3DI | GCAATG | 3 cut(s) | 538, 661, 2117 |
| BseAI | TCCGGA | 2 cut(s) | 108, 2716 |
| BseBI | CCWGG | 5 cut(s) | 367, 1795, 2088, 2642, 2863 |
| BseDI | CCNNGG | 6 cut(s) | 366, 1083, 1591, 1695, 1794, 2575 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 1035, 1084, 1612, 2062, 2087, 2090, 2632 |
| BseMI | GCAATG | 3 cut(s) | 538, 661, 2117 |
| BseMII | CTCAG | 7 cut(s) | 687, 1284, 1602, 2120, 2471, 2913, 2993 |
| BseNI | ACTGG | 4 cut(s) | 316, 322, 2033, 2345 |
| BseRI | GAGGAG | 6 cut(s) | 932, 959, 1504, 2073, 2183, 3116 |
| BseXI | GCAGC | 8 cut(s) | 205, 1374, 2297, 2740, 2989, 3005, 3008, 3103 |
| BsgI | GTGCAG | 2 cut(s) | 1016, 2996 |
| Bsh1236I | CGCG | 2 cut(s) | 786, 3222 |
| BshFI | GGCC | 2 cut(s) | 399, 3183 |
| BsiHKAI | GWGCWC | 2 cut(s) | 325, 2193 |
| BsiSI | CCGG | 2 cut(s) | 109, 2717 |
| BslFI | GGGAC | 4 cut(s) | 328, 853, 1439, 2557 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 1035, 1084, 1612, 2062, 2087, 2090, 2632 |
| BsmAI | GTCTC | 6 cut(s) | 415, 1230, 1601, 2354, 2737, 3161 |
| BsmBI | CGTCTC | 1 cut(s) | 3161 |
| BsmFI | GGGAC | 4 cut(s) | 328, 853, 1439, 2557 |
| BsmI | GAATGC | 2 cut(s) | 1141, 3119 |
| BsnI | GGCC | 2 cut(s) | 399, 3183 |
| Bso31I | GGTCTC | 1 cut(s) | 1601 |
| Bsp1286I | GDGCHC | 2 cut(s) | 325, 2193 |
| Bsp13I | TCCGGA | 2 cut(s) | 108, 2716 |
| Bsp143I | GATC | 8 cut(s) | 565, 793, 1567, 1690, 1786, 1903, 2424, 2923 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 87 |
| BspACI | CCGC | 5 cut(s) | 786, 2615, 3154, 3215, 3220 |
| BspANI | GGCC | 2 cut(s) | 399, 3183 |
| BspCNI | CTCAG | 7 cut(s) | 688, 1285, 1603, 2119, 2472, 2912, 2994 |
| BspEI | TCCGGA | 2 cut(s) | 108, 2716 |
| BspFNI | CGCG | 2 cut(s) | 786, 3222 |
| BspLI | GGNNCC | 4 cut(s) | 113, 273, 615, 1427 |
| BspMI | ACCTGC | 4 cut(s) | 973, 1279, 1722, 2398 |
| BspPI | GGATC | 5 cut(s) | 788, 1685, 1781, 1898, 2918 |
| BspQI | GCTCTTC | 1 cut(s) | 2181 |
| BspTI | CTTAAG | 1 cut(s) | 817 |
| BspTNI | GGTCTC | 1 cut(s) | 1601 |
| BsrBI | CCGCTC | 1 cut(s) | 3217 |
| BsrDI | GCAATG | 3 cut(s) | 538, 661, 2117 |
| BsrI | ACTGG | 4 cut(s) | 316, 322, 2033, 2345 |
| BssECI | CCNNGG | 6 cut(s) | 366, 1083, 1591, 1695, 1794, 2575 |
| BssMI | GATC | 8 cut(s) | 565, 793, 1567, 1690, 1786, 1903, 2424, 2923 |
| BssNAI | GTATAC | 2 cut(s) | 1154, 1578 |
| BssNI | GRCGYC | 2 cut(s) | 2032, 2273 |
| BssSI | CACGAG | 1 cut(s) | 1143 |
| BssT1I | CCWWGG | 3 cut(s) | 1591, 1695, 2575 |
| Bst1107I | GTATAC | 2 cut(s) | 1154, 1578 |
| Bst2BI | CACGAG | 1 cut(s) | 1143 |
| Bst2UI | CCWGG | 5 cut(s) | 367, 1795, 2088, 2642, 2863 |
| Bst4CI | ACNGT | 3 cut(s) | 1158, 2833, 2970 |
| Bst6I | CTCTTC | 3 cut(s) | 1929, 2181, 2352 |
| BstACI | GRCGYC | 2 cut(s) | 2032, 2273 |
| BstAFI | CTTAAG | 1 cut(s) | 817 |
| BstBAI | YACGTR | 1 cut(s) | 875 |
| BstC8I | GCNNGC | 6 cut(s) | 474, 1075, 1079, 1950, 2758, 3008 |
| BstDEI | CTNAG | 9 cut(s) | 87, 696, 1293, 1611, 2106, 2366, 2480, 2899, 3002 |
| BstDSI | CCRYGG | 1 cut(s) | 1083 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2085 |
| BstFNI | CGCG | 2 cut(s) | 786, 3222 |
| BstKTI | GATC | 8 cut(s) | 568, 796, 1570, 1693, 1789, 1906, 2427, 2926 |
| BstMAI | GTCTC | 6 cut(s) | 415, 1230, 1601, 2354, 2737, 3161 |
| BstMBI | GATC | 8 cut(s) | 565, 793, 1567, 1690, 1786, 1903, 2424, 2923 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 733 |
| BstNI | CCWGG | 5 cut(s) | 367, 1795, 2088, 2642, 2863 |
| BstNSI | RCATGY | 2 cut(s) | 782, 2760 |
| BstSCI | CCNGG | 5 cut(s) | 365, 1793, 2086, 2640, 2861 |
| BstSFI | CTRYAG | 1 cut(s) | 2905 |
| BstUI | CGCG | 2 cut(s) | 786, 3222 |
| BstV1I | GCAGC | 8 cut(s) | 205, 1374, 2297, 2740, 2989, 3005, 3008, 3103 |
| BstV2I | GAAGAC | 2 cut(s) | 1748, 2557 |
| BstX2I | RGATCY | 1 cut(s) | 1903 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 337, 1090, 2094 |
| BstYI | RGATCY | 1 cut(s) | 1903 |
| BstZ17I | GTATAC | 2 cut(s) | 1154, 1578 |
| BsuI | GTATCC | 2 cut(s) | 1205, 2064 |
| BsuRI | GGCC | 2 cut(s) | 399, 3183 |
| BtgI | CCRYGG | 1 cut(s) | 1083 |
| BtgZI | GCGATG | 1 cut(s) | 3209 |
| BtsIMutI | CAGTG | 5 cut(s) | 1251, 1608, 2026, 2838, 2999 |
| BveI | ACCTGC | 4 cut(s) | 973, 1279, 1722, 2398 |
| Cac8I | GCNNGC | 6 cut(s) | 474, 1075, 1079, 1950, 2758, 3008 |
| Cfr13I | GGNCC | 7 cut(s) | 111, 397, 1426, 1513, 2638, 2714, 3182 |
| CseI | GACGC | 5 cut(s) | 725, 1576, 2021, 2262, 3211 |
| Csp6I | GTAC | 7 cut(s) | 776, 782, 1371, 1525, 1867, 2117, 2826 |
| CviAII | CATG | 9 cut(s) | 376, 779, 868, 2123, 2132, 2268, 2757, 3204, 3267 |
| CviQI | GTAC | 7 cut(s) | 776, 782, 1371, 1525, 1867, 2117, 2826 |
| DdeI | CTNAG | 9 cut(s) | 87, 696, 1293, 1611, 2106, 2366, 2480, 2899, 3002 |
| DpnI | GATC | 8 cut(s) | 567, 795, 1569, 1692, 1788, 1905, 2426, 2925 |
| DpnII | GATC | 8 cut(s) | 565, 793, 1567, 1690, 1786, 1903, 2424, 2923 |
| DraI | TTTAAA | 1 cut(s) | 490 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 429 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 429 |
| Eam1104I | CTCTTC | 3 cut(s) | 1929, 2181, 2352 |
| EarI | CTCTTC | 3 cut(s) | 1929, 2181, 2352 |
| Ecl136II | GAGCTC | 1 cut(s) | 2191 |
| Eco130I | CCWWGG | 3 cut(s) | 1591, 1695, 2575 |
| Eco24I | GRGCYC | 1 cut(s) | 2193 |
| Eco31I | GGTCTC | 1 cut(s) | 1601 |
| Eco47I | GGWCC | 5 cut(s) | 111, 1426, 1513, 2638, 2714 |
| Eco53kI | GAGCTC | 1 cut(s) | 2191 |
| Eco57I | CTGAAG | 8 cut(s) | 710, 819, 1227, 1559, 2193, 2205, 2430, 2486 |
| Eco72I | CACGTG | 1 cut(s) | 875 |
| EcoICRI | GAGCTC | 1 cut(s) | 2191 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2085 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1426, 2638, 3182 |
| EcoRI | GAATTC | 2 cut(s) | 1182, 1935 |
| EcoRII | CCWGG | 5 cut(s) | 365, 1793, 2086, 2640, 2861 |
| EcoT14I | CCWWGG | 3 cut(s) | 1591, 1695, 2575 |
| EcoT38I | GRGCYC | 1 cut(s) | 2193 |
| ErhI | CCWWGG | 3 cut(s) | 1591, 1695, 2575 |
| Esp3I | CGTCTC | 1 cut(s) | 3161 |
| FaeI | CATG | 9 cut(s) | 379, 782, 871, 2126, 2135, 2271, 2760, 3207, 3270 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 920, 952, 3283 |
| FaqI | GGGAC | 4 cut(s) | 328, 853, 1439, 2557 |
| FatI | CATG | 9 cut(s) | 375, 778, 867, 2122, 2131, 2267, 2756, 3203, 3266 |
| FauI | CCCGC | 1 cut(s) | 779 |
| FbaI | TGATCA | 1 cut(s) | 2424 |
| FblI | GTMKAC | 2 cut(s) | 1153, 1577 |
| Fnu4HI | GCNGC | 9 cut(s) | 194, 1388, 2311, 2754, 2978, 2994, 2997, 3117, 3215 |
| FriOI | GRGCYC | 1 cut(s) | 2193 |
| Fsp4HI | GCNGC | 9 cut(s) | 194, 1388, 2311, 2754, 2978, 2994, 2997, 3117, 3215 |
| FspBI | CTAG | 8 cut(s) | 627, 834, 1326, 1430, 1547, 2447, 2547, 2855 |
| GluI | GCNGC | 9 cut(s) | 194, 1388, 2311, 2754, 2978, 2994, 2997, 3117, 3215 |
| GsuI | CTGGAG | 2 cut(s) | 339, 2070 |
| HaeIII | GGCC | 2 cut(s) | 399, 3183 |
| HapII | CCGG | 2 cut(s) | 109, 2717 |
| HgaI | GACGC | 5 cut(s) | 725, 1576, 2021, 2262, 3211 |
| Hin1I | GRCGYC | 2 cut(s) | 2032, 2273 |
| Hin1II | CATG | 9 cut(s) | 379, 782, 871, 2126, 2135, 2271, 2760, 3207, 3270 |
| HincII | GTYRAC | 2 cut(s) | 2379, 2403 |
| HindII | GTYRAC | 2 cut(s) | 2379, 2403 |
| HindIII | AAGCTT | 3 cut(s) | 89, 1278, 3008 |
| HpaII | CCGG | 2 cut(s) | 109, 2717 |
| HphI | GGTGA | 3 cut(s) | 920, 1018, 1275 |
| Hpy166II | GTNNAC | 7 cut(s) | 512, 1154, 1373, 1578, 2117, 2379, 2403 |
| Hpy8I | GTNNAC | 7 cut(s) | 512, 1154, 1373, 1578, 2117, 2379, 2403 |
| Hpy99I | CGWCG | 1 cut(s) | 3227 |
| HpyCH4III | ACNGT | 3 cut(s) | 1158, 2833, 2970 |
| HpyCH4IV | ACGT | 2 cut(s) | 874, 1167 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 733 |
| HpyF3I | CTNAG | 9 cut(s) | 87, 696, 1293, 1611, 2106, 2366, 2480, 2899, 3002 |
| HpySE526I | ACGT | 2 cut(s) | 874, 1167 |
| Hsp92I | GRCGYC | 2 cut(s) | 2032, 2273 |
| Hsp92II | CATG | 9 cut(s) | 379, 782, 871, 2126, 2135, 2271, 2760, 3207, 3270 |
| Kpn2I | TCCGGA | 2 cut(s) | 108, 2716 |
| Ksp22I | TGATCA | 1 cut(s) | 2424 |
| Kzo9I | GATC | 8 cut(s) | 565, 793, 1567, 1690, 1786, 1903, 2424, 2923 |
| LguI | GCTCTTC | 1 cut(s) | 2181 |
| LmnI | GCTCC | 7 cut(s) | 271, 320, 613, 2196, 2318, 3222, 3257 |
| Lsp1109I | GCAGC | 8 cut(s) | 205, 1374, 2297, 2740, 2989, 3005, 3008, 3103 |
| LweI | GCATC | 5 cut(s) | 1204, 1387, 1510, 2644, 2794 |
| MaeI | CTAG | 8 cut(s) | 627, 834, 1326, 1430, 1547, 2447, 2547, 2855 |
| MaeII | ACGT | 2 cut(s) | 874, 1167 |
| MaeIII | GTNAC | 7 cut(s) | 175, 870, 1093, 1703, 2293, 2857, 2935 |
| MalI | GATC | 8 cut(s) | 567, 795, 1569, 1692, 1788, 1905, 2426, 2925 |
| MbiI | CCGCTC | 1 cut(s) | 3217 |
| MboI | GATC | 8 cut(s) | 565, 793, 1567, 1690, 1786, 1903, 2424, 2923 |
| MfeI | CAATTG | 2 cut(s) | 722, 731 |
| MflI | RGATCY | 1 cut(s) | 1903 |
| MhlI | GDGCHC | 2 cut(s) | 325, 2193 |
| MmeI | TCCRAC | 2 cut(s) | 337, 1529 |
| MroI | TCCGGA | 2 cut(s) | 108, 2716 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1776, 1803, 1860, 2474 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1088, 2605, 3194 |
| MspA1I | CMGCKG | 1 cut(s) | 2408 |
| MspCI | CTTAAG | 1 cut(s) | 817 |
| MspI | CCGG | 2 cut(s) | 109, 2717 |
| MspR9I | CCNGG | 5 cut(s) | 367, 1795, 2088, 2642, 2863 |
| MunI | CAATTG | 2 cut(s) | 722, 731 |
| Mva1269I | GAATGC | 2 cut(s) | 1141, 3119 |
| MvaI | CCWGG | 5 cut(s) | 367, 1795, 2088, 2642, 2863 |
| MvnI | CGCG | 2 cut(s) | 786, 3222 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 733 |
| NdeII | GATC | 8 cut(s) | 565, 793, 1567, 1690, 1786, 1903, 2424, 2923 |
| NlaIII | CATG | 9 cut(s) | 379, 782, 871, 2126, 2135, 2271, 2760, 3207, 3270 |
| NlaIV | GGNNCC | 4 cut(s) | 113, 273, 615, 1427 |
| NmuCI | GTSAC | 4 cut(s) | 870, 1093, 1703, 2293 |
| NspI | RCATGY | 2 cut(s) | 782, 2760 |
| PaeI | GCATGC | 1 cut(s) | 2760 |
| PciI | ACATGT | 1 cut(s) | 778 |
| PciSI | GCTCTTC | 1 cut(s) | 2181 |
| PctI | GAATGC | 2 cut(s) | 1141, 3119 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1776, 1803, 1860, 2474 |
| PfeI | GAWTC | 9 cut(s) | 380, 549, 745, 1313, 1810, 1873, 2344, 2492, 3176 |
| PkrI | GCNGC | 9 cut(s) | 195, 1389, 2312, 2755, 2979, 2995, 2998, 3118, 3216 |
| PmaCI | CACGTG | 1 cut(s) | 875 |
| PmlI | CACGTG | 1 cut(s) | 875 |
| Ppu21I | YACGTR | 1 cut(s) | 875 |
| PpuMI | RGGWCCY | 2 cut(s) | 1426, 2638 |
| PscI | ACATGT | 1 cut(s) | 778 |
| PsiI | TTATAA | 2 cut(s) | 1758, 1994 |
| Psp124BI | GAGCTC | 1 cut(s) | 2193 |
| Psp5II | RGGWCCY | 2 cut(s) | 1426, 2638 |
| Psp6I | CCWGG | 5 cut(s) | 365, 1793, 2086, 2640, 2861 |
| PspCI | CACGTG | 1 cut(s) | 875 |
| PspGI | CCWGG | 5 cut(s) | 365, 1793, 2086, 2640, 2861 |
| PspN4I | GGNNCC | 4 cut(s) | 113, 273, 615, 1427 |
| PspPI | GGNCC | 7 cut(s) | 111, 397, 1426, 1513, 2638, 2714, 3182 |
| PspPPI | RGGWCCY | 2 cut(s) | 1426, 2638 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 444, 476 |
| PsuI | RGATCY | 1 cut(s) | 1903 |
| PvuII | CAGCTG | 1 cut(s) | 2408 |
| RsaI | GTAC | 7 cut(s) | 777, 783, 1372, 1526, 1868, 2118, 2827 |
| RsaNI | GTAC | 7 cut(s) | 776, 782, 1371, 1525, 1867, 2117, 2826 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1088, 2605, 3194 |
| SacI | GAGCTC | 1 cut(s) | 2193 |
| SapI | GCTCTTC | 1 cut(s) | 2181 |
| SatI | GCNGC | 9 cut(s) | 194, 1388, 2311, 2754, 2978, 2994, 2997, 3117, 3215 |
| Sau3AI | GATC | 8 cut(s) | 565, 793, 1567, 1690, 1786, 1903, 2424, 2923 |
| Sau96I | GGNCC | 7 cut(s) | 111, 397, 1426, 1513, 2638, 2714, 3182 |
| ScrFI | CCNGG | 5 cut(s) | 367, 1795, 2088, 2642, 2863 |
| SduI | GDGCHC | 2 cut(s) | 325, 2193 |
| SfaNI | GCATC | 5 cut(s) | 1204, 1387, 1510, 2644, 2794 |
| SfcI | CTRYAG | 1 cut(s) | 2905 |
| SinI | GGWCC | 5 cut(s) | 111, 1426, 1513, 2638, 2714 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1088, 2605, 3194 |
| SmlI | CTYRAG | 7 cut(s) | 156, 817, 1187, 1275, 1364, 1392, 2961 |
| SmoI | CTYRAG | 7 cut(s) | 156, 817, 1187, 1275, 1364, 1392, 2961 |
| SpeI | ACTAGT | 1 cut(s) | 833 |
| SphI | GCATGC | 1 cut(s) | 2760 |
| SsiI | CCGC | 5 cut(s) | 786, 2615, 3154, 3215, 3220 |
| SspI | AATATT | 2 cut(s) | 1265, 3279 |
| SspMI | CTAG | 8 cut(s) | 627, 834, 1326, 1430, 1547, 2447, 2547, 2855 |
| SstI | GAGCTC | 1 cut(s) | 2193 |
| StyD4I | CCNGG | 5 cut(s) | 365, 1793, 2086, 2640, 2861 |
| StyI | CCWWGG | 3 cut(s) | 1591, 1695, 2575 |
| TaaI | ACNGT | 3 cut(s) | 1158, 2833, 2970 |
| TaiI | ACGT | 2 cut(s) | 877, 1170 |
| TaqI | TCGA | 4 cut(s) | 202, 1405, 2798, 3033 |
| TatI | WGTACW | 5 cut(s) | 775, 1524, 1866, 2116, 2825 |
| TauI | GCSGC | 1 cut(s) | 3217 |
| TfiI | GAWTC | 9 cut(s) | 380, 549, 745, 1313, 1810, 1873, 2344, 2492, 3176 |
| TscAI | CASTG | 5 cut(s) | 1251, 1615, 2033, 2838, 3006 |
| TseFI | GTSAC | 4 cut(s) | 870, 1093, 1703, 2293 |
| TseI | GCWGC | 8 cut(s) | 193, 1387, 2310, 2753, 2977, 2993, 2996, 3116 |
| Tsp45I | GTSAC | 4 cut(s) | 870, 1093, 1703, 2293 |
| TspGWI | ACGGA | 3 cut(s) | 1100, 1863, 3185 |
| TspRI | CASTG | 5 cut(s) | 1251, 1615, 2033, 2838, 3006 |
| Vha464I | CTTAAG | 1 cut(s) | 817 |
| VpaK11BI | GGWCC | 5 cut(s) | 111, 1426, 1513, 2638, 2714 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2085 |
| XapI | RAATTY | 8 cut(s) | 119, 1182, 1418, 1840, 1857, 1935, 2930, 3076 |
| XbaI | TCTAGA | 1 cut(s) | 1546 |
| XceI | RCATGY | 2 cut(s) | 782, 2760 |
| XcmI | CCANNNNNNNNNTGG | 6 cut(s) | 373, 391, 605, 1036, 2505, 2629 |
| XmiI | GTMKAC | 2 cut(s) | 1153, 1577 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1776, 1803, 1860, 2474 |
| XspI | CTAG | 8 cut(s) | 627, 834, 1326, 1430, 1547, 2447, 2547, 2855 |