Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006012.1

Orthogroup ID

OG0002858

Physical Location & Seq

Genomic Coordinates Reverse (-)

43563 .. 45823

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006012.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgccatccgctagtacaacaattgaagtagaaaagattaagctcgtactttgggagaagaatatgcagcggttgctcattgataaatcaggctatgaagatggaaaagctgatctagagtttgttacttctttttcagacgaactagcacaagggttgttggcacagggaacagctgatgcagcagcagattcttttagcaagattatccagatgggattcatgttcgattttaatgagagtaaagcggagtttctgctgatgagagaaaatttagacttaatcggtgaccgaagtcgccggaattcgttgaaactcgccggagcagactcgaagcttcaggtcttcgattctccttcttcgttcaatgcatggacaatcagaggccatggacgcgacgaatatggcgagatggagagaatgccagtggtccgccgctctgctgtggccggacggagtatcgccagtcggatcctctttgcgggtctccgggtcgcgtcagtcatagaaatctggttttctctctcggtcctactggatggatcatctgattacatgcctacttataggctttttcaaataatattcgatggctgtgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.39

Weight (kDa)

4.96

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002858)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13480
pyrus_communis	pycom08g06270
rosa_chinensis	RchiOBHm_Chr2g0086071 RchiOBHm_Chr2g0086081 RchiOBHm_Chr2g0086101 RchiOBHm_Chr2g0122661
rosa_laevigata	RLG00000015740 RLG00000015743 RLG00000018698 RLG00000018704
rosa_multiflora	Rmu_sc0003133.1_g000025 Rmu_sc0006012.1_g000008 Rmu_sc0017765.1_g000003 Rmu_sc0020050.1_g000004 Rmu_ssc0000041.1_g000003 Rmu_ssc0000355.1_g000017
rosa_roxburghii	Rroxscaffold_2G00106820 Rroxscaffold_2G00121390 Rroxscaffold_2G00154810 Rroxscaffold_6G00408820
rosa_rugosa	Rorug01G0465700 Rorug01G0465700 Rorug02G0241200
rosa_samantha	Rh2AG014900 Rh2AG015300 Rh2AG298900 Rh2BG015400 Rh2BG307800 Rh2CG015900 Rh2CG016300 Rh2CG285900 Rh2DG017200 Rh2DG017400 Rh4BG170400 Rh6CG207900 Rh6DG198200
rosa_wichuraiana	Rw2G001310 Rw2G001330 Rw2G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	438
AccII	CGCG	2 cut(s)	396, 497
AciI	CCGC	6 cut(s)	9, 70, 248, 433, 436, 482
AclWI	GGATC	3 cut(s)	466, 479, 550
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	2 cut(s)	271, 304
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	2 cut(s)	16, 48
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	4 cut(s)	26, 313, 367, 578
AluBI	AGCT	4 cut(s)	43, 110, 176, 337
AluI	AGCT	4 cut(s)	43, 110, 176, 337
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	3 cut(s)	466, 479, 550
AoxI	GGCC	2 cut(s)	385, 447
ApeKI	GCWGC	3 cut(s)	67, 182, 185
ApoI	RAATTY	2 cut(s)	271, 304
AspS9I	GGNCC	2 cut(s)	430, 529
AsuC2I	CCSGG	1 cut(s)	491
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	430, 529
BamHI	GGATCC	1 cut(s)	471
BbsI	GAAGAC	1 cut(s)	337
BbvI	GCAGC	3 cut(s)	79, 194, 197
BccI	CCATC	6 cut(s)	13, 95, 208, 406, 533, 584
BcnI	CCSGG	1 cut(s)	491
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	3 cut(s)	12, 116, 146
BisI	GCNGC	4 cut(s)	68, 183, 186, 436
BlsI	GCNGC	4 cut(s)	69, 184, 187, 437
Bme1390I	CCNGG	1 cut(s)	491
Bme18I	GGWCC	2 cut(s)	430, 529
BmgT120I	GGNCC	2 cut(s)	430, 529
BmiI	GGNNCC	1 cut(s)	473
BmrFI	CCNGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	169
BoxI	GACNNNNGTC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	337
BpuMI	CCSGG	1 cut(s)	491
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	3 cut(s)	425, 465, 540
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	2 cut(s)	5, 544
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseNI	ACTGG	3 cut(s)	425, 465, 540
BseXI	GCAGC	3 cut(s)	79, 194, 197
Bsh1236I	CGCG	2 cut(s)	396, 497
BshFI	GGCC	2 cut(s)	387, 449
BsiSI	CCGG	4 cut(s)	301, 321, 450, 490
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	1 cut(s)	491
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	2 cut(s)	387, 449
Bso31I	GGTCTC	1 cut(s)	491
Bsp143I	GATC	3 cut(s)	112, 471, 542
Bsp19I	CCATGG	1 cut(s)	388
BspACI	CCGC	6 cut(s)	9, 70, 248, 433, 436, 482
BspANI	GGCC	2 cut(s)	387, 449
BspFNI	CGCG	2 cut(s)	396, 497
BspLI	GGNNCC	1 cut(s)	473
BspPI	GGATC	3 cut(s)	466, 479, 550
BspTNI	GGTCTC	1 cut(s)	491
BsrBI	CCGCTC	1 cut(s)	438
BsrI	ACTGG	3 cut(s)	425, 465, 540
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	3 cut(s)	112, 471, 542
BssT1I	CCWWGG	1 cut(s)	388
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstDSI	CCRYGG	1 cut(s)	388
BstEII	GGTNACC	1 cut(s)	287
BstF5I	GGATG	2 cut(s)	5, 544
BstFNI	CGCG	2 cut(s)	396, 497
BstKTI	GATC	3 cut(s)	115, 474, 545
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	3 cut(s)	112, 471, 542
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 182, 393
BstNSI	RCATGY	1 cut(s)	559
BstPAI	GACNNNNGTC	1 cut(s)	294
BstPI	GGTNACC	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	489
BstUI	CGCG	2 cut(s)	396, 497
BstV1I	GCAGC	3 cut(s)	79, 194, 197
BstV2I	GAAGAC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
BsuRI	GGCC	2 cut(s)	387, 449
BtgI	CCRYGG	1 cut(s)	388
BtsCI	GGATG	2 cut(s)	5, 544
BtsIMutI	CAGTG	1 cut(s)	432
Cfr13I	GGNCC	2 cut(s)	430, 529
CseI	GACGC	2 cut(s)	402, 486
Csp6I	GTAC	2 cut(s)	15, 47
CviAII	CATG	4 cut(s)	223, 372, 389, 556
CviJI	RGCY	9 cut(s)	43, 93, 110, 176, 337, 387, 449, 571, 594
CviKI_1	RGCY	9 cut(s)	43, 93, 110, 176, 337, 387, 449, 571, 594
CviQI	GTAC	2 cut(s)	15, 47
DpnI	GATC	3 cut(s)	114, 473, 544
DpnII	GATC	3 cut(s)	112, 471, 542
EaeI	YGGCCR	1 cut(s)	447
EciI	GGCGGA	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	388
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	2 cut(s)	430, 529
Eco57I	CTGAAG	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	287
EcoO65I	GGTNACC	1 cut(s)	287
EcoRI	GAATTC	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	388
EcoT22I	ATGCAT	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	4 cut(s)	226, 375, 392, 559
FaiI	YATR	9 cut(s)	65, 96, 224, 373, 390, 405, 506, 557, 567
FatI	CATG	4 cut(s)	222, 371, 388, 555
FauI	CCCGC	1 cut(s)	475
Fnu4HI	GCNGC	4 cut(s)	68, 183, 186, 436
FokI	GGATG	1 cut(s)	551
Fsp4HI	GCNGC	4 cut(s)	68, 183, 186, 436
FspBI	CTAG	3 cut(s)	12, 116, 146
GluI	GCNGC	4 cut(s)	68, 183, 186, 436
HaeIII	GGCC	2 cut(s)	387, 449
HapII	CCGG	4 cut(s)	301, 321, 450, 490
HgaI	GACGC	2 cut(s)	402, 486
Hin1II	CATG	4 cut(s)	226, 375, 392, 559
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	4 cut(s)	191, 219, 329, 350
HpaII	CCGG	4 cut(s)	301, 321, 450, 490
HphI	GGTGA	1 cut(s)	299
Hpy188I	TCNGA	4 cut(s)	139, 383, 471, 550
Hpy188III	TCNNGA	2 cut(s)	116, 211
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	67, 182, 371
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 182, 393
Hsp92II	CATG	4 cut(s)	226, 375, 392, 559
Kzo9I	GATC	3 cut(s)	112, 471, 542
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	3 cut(s)	79, 194, 197
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	3 cut(s)	12, 116, 146
MaeIII	GTNAC	2 cut(s)	124, 287
MalI	GATC	3 cut(s)	114, 473, 544
MbiI	CCGCTC	1 cut(s)	438
MboI	GATC	3 cut(s)	112, 471, 542
MboII	GAAGA	4 cut(s)	70, 110, 337, 351
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	1 cut(s)	471
MluCI	AATT	3 cut(s)	21, 271, 304
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	449
MnlI	CCTC	2 cut(s)	377, 485
Mph1103I	ATGCAT	1 cut(s)	373
MseI	TTAA	3 cut(s)	39, 234, 281
MspA1I	CMGCKG	2 cut(s)	70, 176
MspI	CCGG	4 cut(s)	301, 321, 450, 490
MspR9I	CCNGG	1 cut(s)	491
MunI	CAATTG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	426
MvnI	CGCG	2 cut(s)	396, 497
MwoI	GCNNNNNNNGC	3 cut(s)	73, 182, 393
NciI	CCSGG	1 cut(s)	491
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	3 cut(s)	112, 471, 542
NlaIII	CATG	4 cut(s)	226, 375, 392, 559
NlaIV	GGNNCC	1 cut(s)	473
NmuCI	GTSAC	1 cut(s)	287
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	3 cut(s)	191, 219, 350
PkrI	GCNGC	4 cut(s)	69, 184, 187, 437
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
PshAI	GACNNNNGTC	1 cut(s)	294
PspEI	GGTNACC	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	473
PspPI	GGNCC	2 cut(s)	430, 529
PsuI	RGATCY	1 cut(s)	471
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	16, 48
RsaNI	GTAC	2 cut(s)	15, 47
SaqAI	TTAA	3 cut(s)	39, 234, 281
SatI	GCNGC	4 cut(s)	68, 183, 186, 436
Sau3AI	GATC	3 cut(s)	112, 471, 542
Sau96I	GGNCC	2 cut(s)	430, 529
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	491
SetI	ASST	5 cut(s)	45, 112, 178, 339, 345
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	2 cut(s)	430, 529
Sse9I	AATT	3 cut(s)	21, 271, 304
SsiI	CCGC	6 cut(s)	9, 70, 248, 433, 436, 482
SspI	AATATT	1 cut(s)	585
SspMI	CTAG	3 cut(s)	12, 116, 146
StyD4I	CCNGG	1 cut(s)	489
StyI	CCWWGG	1 cut(s)	388
TaqI	TCGA	4 cut(s)	228, 332, 348, 588
TaqII	GACCGA	2 cut(s)	306, 517
TasI	AATT	3 cut(s)	21, 271, 304
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	438
TfiI	GAWTC	3 cut(s)	191, 219, 350
Tru1I	TTAA	3 cut(s)	39, 234, 281
Tru9I	TTAA	3 cut(s)	39, 234, 281
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	3 cut(s)	67, 182, 185
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	111, 211
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	1 cut(s)	432
VpaK11BI	GGWCC	2 cut(s)	430, 529
XapI	RAATTY	2 cut(s)	271, 304
XbaI	TCTAGA	1 cut(s)	115
XceI	RCATGY	1 cut(s)	559
XspI	CTAG	3 cut(s)	12, 116, 146
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.