Rroxscaffold_2G00106820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002858
Physical Location & Seq
Reverse (-)
30393876 .. 30395398
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106820.1

Sequence Viewer

Length: 639 bp
ATGATCCCTTATCGTCTTACCGAGGGCCTTAACCAACAACATTGCAAGAAGAAAGTGTTTGAAGACCTCGGATTGGACAGATTCATACAAAACACCGAAGAATCTATTCGTTTGATCCACTGGGAAAGTATTCTGGATTGGACAAAGATACCAACCATTGATGAGAACTTTTATGGAACTGATATTCTTGTATACAAGAATCGGTTAAGAGATATCGGTGTGAAGACTAATGCGATCCGAGAGTACAAAAGCAGATGTGAAAAAGGTGAAGCTAGTTTCCGGAAGAAGCGGTACGAGCGGTTGTTCATTGATAGTTCTGGGTACAACAATGGAAAATCTGATCTAAAATTTGTTGCAGCTTTCGCTGACGAACTTGCTCAAGGACTGTTGGTGCAAGCAAAAGCAAGAGCAACATTGAGCAAGATCATCCAAATTGGGTTTTTGTCCGGTTTTAGTGAGAATGAAGTGGATGTCTTGCTAATTGGAGAAAATTTAGAGTTGTCTGTGGAAGATAAGGAATTTCTTGATGCCGCATTCCCCTCATCAACTGTTCCTGGTCCTGTTTGTGGGAAGTGGTCATCTATGGAAAGAGATCAATTAGACCCTTCATCAACTACTTTAGGCAAGAAGCAGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.18

Weight (kDa)

6.21

Isoelectric Point (pI)

23.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 298
AccI GTMKAC 1 cut(s) 192
AccIII TCCGGA 1 cut(s) 279
AciI CCGC 3 cut(s) 289, 298, 531
AclWI GGATC 2 cut(s) 109, 229
AcsI RAATTY 3 cut(s) 347, 490, 518
AfaI GTAC 3 cut(s) 245, 293, 323
AfiI CCNNNNNNNGG 2 cut(s) 73, 566
AgsI TTSAA 1 cut(s) 62
AjnI CCWGG 1 cut(s) 553
AluBI AGCT 2 cut(s) 272, 359
AluI AGCT 2 cut(s) 272, 359
AlwI GGATC 2 cut(s) 109, 229
Aor13HI TCCGGA 1 cut(s) 279
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 356, 631
ApoI RAATTY 3 cut(s) 347, 490, 518
Asp700I GAANNNNTTC 2 cut(s) 105, 129
AspS9I GGNCC 2 cut(s) 25, 557
AsuHPI GGTGA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 557
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
BbsI GAAGAC 2 cut(s) 69, 230
BbvI GCAGC 1 cut(s) 368
BciT130I CCWGG 1 cut(s) 555
BfaI CTAG 1 cut(s) 273
BisI GCNGC 3 cut(s) 357, 531, 632
BlsI GCNGC 3 cut(s) 358, 532, 633
Bme1390I CCNGG 1 cut(s) 555
Bme18I GGWCC 1 cut(s) 557
BmgT120I GGNCC 2 cut(s) 25, 557
BmrFI CCNGG 1 cut(s) 555
BmrI ACTGGG 1 cut(s) 130
BmsI GCATC 1 cut(s) 517
BmuI ACTGGG 1 cut(s) 130
BpiI GAAGAC 2 cut(s) 69, 230
BpuEI CTTGAG 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 21, 67
BsaWI WCCGGW 2 cut(s) 279, 446
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 566
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 40
BseAI TCCGGA 1 cut(s) 279
BseBI CCWGG 1 cut(s) 555
BseDI CCNNGG 2 cut(s) 21, 67
BseGI GGATG 2 cut(s) 426, 475
BseLI CCNNNNNNNGG 2 cut(s) 73, 566
BseMI GCAATG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 368
BshFI GGCC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 280, 447
BslI CCNNNNNNNGG 2 cut(s) 73, 566
BsmI GAATGC 1 cut(s) 533
BsnI GGCC 1 cut(s) 27
Bsp13I TCCGGA 1 cut(s) 279
Bsp143I GATC 6 cut(s) 3, 114, 234, 340, 423, 592
BspACI CCGC 3 cut(s) 289, 298, 531
BspANI GGCC 1 cut(s) 27
BspEI TCCGGA 1 cut(s) 279
BspPI GGATC 2 cut(s) 109, 229
BsrBI CCGCTC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 40
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 21, 67
BssMI GATC 6 cut(s) 3, 114, 234, 340, 423, 592
BssNAI GTATAC 1 cut(s) 193
Bst1107I GTATAC 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 555
Bst4CI ACNGT 2 cut(s) 387, 550
BstC8I GCNNGC 1 cut(s) 396
BstF5I GGATG 2 cut(s) 426, 475
BstKTI GATC 6 cut(s) 6, 117, 237, 343, 426, 595
BstMBI GATC 6 cut(s) 3, 114, 234, 340, 423, 592
BstMWI GCNNNNNNNGC 2 cut(s) 295, 362
BstNI CCWGG 1 cut(s) 555
BstSCI CCNGG 1 cut(s) 553
BstV1I GCAGC 1 cut(s) 368
BstV2I GAAGAC 2 cut(s) 69, 230
BstZ17I GTATAC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 2 cut(s) 426, 475
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 396
Cfr13I GGNCC 2 cut(s) 25, 557
Csp6I GTAC 3 cut(s) 244, 292, 322
CviJI RGCY 3 cut(s) 27, 272, 359
CviKI_1 RGCY 3 cut(s) 27, 272, 359
CviQI GTAC 3 cut(s) 244, 292, 322
DpnI GATC 6 cut(s) 5, 116, 236, 342, 425, 594
DpnII GATC 6 cut(s) 3, 114, 234, 340, 423, 592
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 557
EcoO109I RGGNCCY 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 553
EcoRV GATATC 1 cut(s) 214
FaiI YATR 4 cut(s) 86, 174, 193, 584
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 357, 531, 632
FokI GGATG 2 cut(s) 413, 482
Fsp4HI GCNGC 3 cut(s) 357, 531, 632
FspBI CTAG 1 cut(s) 273
GluI GCNGC 3 cut(s) 357, 531, 632
HaeIII GGCC 1 cut(s) 27
HapII CCGG 2 cut(s) 280, 447
HinfI GANTC 3 cut(s) 81, 101, 199
HpaII CCGG 2 cut(s) 280, 447
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 3 cut(s) 71, 239, 340
Hpy188III TCNNGA 3 cut(s) 134, 280, 524
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 615
HpyCH4III ACNGT 2 cut(s) 387, 550
HpyCH4V TGCA 3 cut(s) 45, 356, 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 295, 362
Kpn2I TCCGGA 1 cut(s) 279
Kzo9I GATC 6 cut(s) 3, 114, 234, 340, 423, 592
LpnPI CCDG 8 cut(s) 106, 119, 293, 303, 460, 540, 567, 573
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 1 cut(s) 517
MaeI CTAG 1 cut(s) 273
MalI GATC 6 cut(s) 5, 116, 236, 342, 425, 594
MbiI CCGCTC 1 cut(s) 298
MboI GATC 6 cut(s) 3, 114, 234, 340, 423, 592
MboII GAAGA 6 cut(s) 61, 74, 110, 235, 295, 521
MluCI AATT 6 cut(s) 347, 432, 480, 490, 518, 596
MnlI CCTC 3 cut(s) 16, 77, 550
MroI TCCGGA 1 cut(s) 279
MroXI GAANNNNTTC 2 cut(s) 105, 129
MseI TTAA 2 cut(s) 30, 206
MspI CCGG 2 cut(s) 280, 447
MspR9I CCNGG 1 cut(s) 555
Mva1269I GAATGC 1 cut(s) 533
MvaI CCWGG 1 cut(s) 555
MwoI GCNNNNNNNGC 2 cut(s) 295, 362
NdeII GATC 6 cut(s) 3, 114, 234, 340, 423, 592
PctI GAATGC 1 cut(s) 533
PdmI GAANNNNTTC 2 cut(s) 105, 129
PfeI GAWTC 3 cut(s) 81, 101, 199
PkrI GCNGC 3 cut(s) 358, 532, 633
Psp6I CCWGG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 553
PspPI GGNCC 2 cut(s) 25, 557
RsaI GTAC 3 cut(s) 245, 293, 323
RsaNI GTAC 3 cut(s) 244, 292, 322
SaqAI TTAA 2 cut(s) 30, 206
SatI GCNGC 3 cut(s) 357, 531, 632
Sau3AI GATC 6 cut(s) 3, 114, 234, 340, 423, 592
Sau96I GGNCC 2 cut(s) 25, 557
ScrFI CCNGG 1 cut(s) 555
SetI ASST 4 cut(s) 69, 268, 274, 361
SfaNI GCATC 1 cut(s) 517
SinI GGWCC 1 cut(s) 557
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 6 cut(s) 347, 432, 480, 490, 518, 596
SsiI CCGC 3 cut(s) 289, 298, 531
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 553
TaaI ACNGT 2 cut(s) 387, 550
TasI AATT 6 cut(s) 347, 432, 480, 490, 518, 596
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 533
TfiI GAWTC 3 cut(s) 81, 101, 199
Tru1I TTAA 2 cut(s) 30, 206
Tru9I TTAA 2 cut(s) 30, 206
TscAI CASTG 1 cut(s) 125
TseI GCWGC 2 cut(s) 356, 631
TspDTI ATGAA 4 cut(s) 73, 295, 477, 597
TspRI CASTG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 557
XapI RAATTY 3 cut(s) 347, 490, 518
XmiI GTMKAC 1 cut(s) 192
XmnI GAANNNNTTC 2 cut(s) 105, 129
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.