Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003133.1

Orthogroup ID

OG0002858

Physical Location & Seq

Genomic Coordinates Reverse (-)

133152 .. 134219

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003133.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ctgtttctgtccttcttatgtgtgcttgatgaacattacaatgaagagctcctccccgtgttttcttcagcctttggagttgcagagaatccttctctcgatcattatatagatctctggaacaaatggaatgggaagggccaactgactctggaagagtactgctgctccttctggaagtatgttgtagacaactggaatccagaagttgaagaggctttaaaaggtttgacaaaactacctgccacaaagtcgatatctgagaaagtatatcagatcaacaggaaagaagtattccctgctgatgacttgcaactgaaaaatgttttcttgagatatgatgaggctccattatttgtgtggtttcccaggaacaactgtttgtgtacaagaagactttatgagatttatgagtcccttggagtaaaaaaggtttctgaatcagttcagtacataccatttaccaaaatacagttggatccagagaaagatgtattaaatggattgattaacaggggtttaatcaaaattattctgggttttcttgctggttcgcaggttactatgccattggaagatagaaaagatgctgcatcctcaattattagacttaaggtgtataagttggacaatccatatgaatacatttacagactaatgcaatctgagagtacaaaagtggatgtgaaaaaagtgaagctagtttcctggaagaagcggtctgagcggttgttcattgatagttcagggtacaacaatggaaaatctgatctaaaatttgttgcagctttcgctgacgaacttgctcaaggactgttggtgcaagcaaaagcaagagcaacattgagcaagatcatccaaattgggtttttgtctggttttagtgaaaatgaagtggatgtcttgctaatgggagaaaatttagagttgtctgtggaagataaggaatttcttgatgctgcattcccctcatcaactgttcctggtcctgtttgtgggaagcggtcatctatggagagagatcaatcagacccttcatcaactacttcaggcaagaagcagcgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

355

Amino Acids

40.44

Weight (kDa)

5.75

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002858)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13480
pyrus_communis	pycom08g06270
rosa_chinensis	RchiOBHm_Chr2g0086071 RchiOBHm_Chr2g0086081 RchiOBHm_Chr2g0086101 RchiOBHm_Chr2g0122661
rosa_laevigata	RLG00000015740 RLG00000015743 RLG00000018698 RLG00000018704
rosa_multiflora	Rmu_sc0003133.1_g000025 Rmu_sc0006012.1_g000008 Rmu_sc0017765.1_g000003 Rmu_sc0020050.1_g000004 Rmu_ssc0000041.1_g000003 Rmu_ssc0000355.1_g000017
rosa_roxburghii	Rroxscaffold_2G00106820 Rroxscaffold_2G00121390 Rroxscaffold_2G00154810 Rroxscaffold_6G00408820
rosa_rugosa	Rorug01G0465700 Rorug01G0465700 Rorug02G0241200
rosa_samantha	Rh2AG014900 Rh2AG015300 Rh2AG298900 Rh2BG015400 Rh2BG307800 Rh2CG015900 Rh2CG016300 Rh2CG285900 Rh2DG017200 Rh2DG017400 Rh4BG170400 Rh6CG207900 Rh6DG198200
rosa_wichuraiana	Rw2G001310 Rw2G001330 Rw2G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	250, 547
AccBSI	CCGCTC	1 cut(s)	727
AccI	GTMKAC	1 cut(s)	189
AciI	CCGC	3 cut(s)	718, 727, 1003
AclWI	GGATC	2 cut(s)	473, 486
AcsI	RAATTY	3 cut(s)	776, 919, 947
AcuI	CTGAAG	2 cut(s)	51, 1032
AfaI	GTAC	5 cut(s)	161, 388, 452, 673, 752
AfiI	CCNNNNNNNGG	1 cut(s)	995
AflII	CTTAAG	1 cut(s)	611
AgsI	TTSAA	1 cut(s)	212
AjnI	CCWGG	3 cut(s)	368, 707, 982
AluBI	AGCT	3 cut(s)	49, 700, 788
AluI	AGCT	3 cut(s)	49, 700, 788
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	473, 486
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	5 cut(s)	165, 590, 785, 959, 1060
ApoI	RAATTY	3 cut(s)	776, 919, 947
Asp700I	GAANNNNTTC	1 cut(s)	444
AspS9I	GGNCC	2 cut(s)	139, 986
AvaII	GGWCC	1 cut(s)	986
BamHI	GGATCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	4 cut(s)	152, 577, 797, 946
BciT130I	CCWGG	3 cut(s)	370, 709, 984
BfaI	CTAG	1 cut(s)	701
BfrI	CTTAAG	1 cut(s)	611
BfuAI	ACCTGC	2 cut(s)	250, 547
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	5 cut(s)	166, 591, 786, 960, 1061
BlsI	GCNGC	5 cut(s)	167, 592, 787, 961, 1062
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	3 cut(s)	370, 709, 984
Bme18I	GGWCC	1 cut(s)	986
BmgT120I	GGNCC	2 cut(s)	139, 986
BmiI	GGNNCC	2 cut(s)	348, 480
BmrFI	CCNGG	3 cut(s)	370, 709, 984
BmsI	GCATC	3 cut(s)	577, 602, 946
BpiI	GAAGAC	1 cut(s)	400
BpuEI	CTTGAG	2 cut(s)	352, 792
BsaJI	CCNNGG	2 cut(s)	368, 418
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	995
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	3 cut(s)	370, 709, 984
BseDI	CCNNGG	2 cut(s)	368, 418
BseGI	GGATG	4 cut(s)	593, 688, 855, 904
BseLI	CCNNNNNNNGG	1 cut(s)	995
BseMII	CTCAG	3 cut(s)	252, 657, 714
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	4 cut(s)	152, 577, 797, 946
BshFI	GGCC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	995
BsmFI	GGGAC	1 cut(s)	400
BsmI	GAATGC	1 cut(s)	962
BsnI	GGCC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp1407I	TGTACA	1 cut(s)	386
Bsp143I	GATC	7 cut(s)	100, 112, 276, 478, 769, 852, 1021
BspACI	CCGC	3 cut(s)	718, 727, 1003
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	3 cut(s)	253, 658, 715
BspLI	GGNNCC	2 cut(s)	348, 480
BspMI	ACCTGC	2 cut(s)	250, 547
BspPI	GGATC	2 cut(s)	473, 486
BspQI	GCTCTTC	1 cut(s)	39
BspTI	CTTAAG	1 cut(s)	611
BsrBI	CCGCTC	1 cut(s)	727
BsrGI	TGTACA	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	368, 418
BssMI	GATC	7 cut(s)	100, 112, 276, 478, 769, 852, 1021
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	3 cut(s)	370, 709, 984
Bst4CI	ACNGT	4 cut(s)	380, 474, 816, 979
Bst6I	CTCTTC	3 cut(s)	39, 150, 207
BstAFI	CTTAAG	1 cut(s)	611
BstAUI	TGTACA	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	825
BstDEI	CTNAG	3 cut(s)	261, 666, 723
BstF5I	GGATG	4 cut(s)	593, 688, 855, 904
BstKTI	GATC	7 cut(s)	103, 115, 279, 481, 772, 855, 1024
BstMBI	GATC	7 cut(s)	100, 112, 276, 478, 769, 852, 1021
BstMWI	GCNNNNNNNGC	2 cut(s)	724, 791
BstNI	CCWGG	3 cut(s)	370, 709, 984
BstSCI	CCNGG	3 cut(s)	368, 707, 982
BstV1I	GCAGC	4 cut(s)	152, 577, 797, 946
BstV2I	GAAGAC	1 cut(s)	400
BstX2I	RGATCY	2 cut(s)	112, 478
BstYI	RGATCY	2 cut(s)	112, 478
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	4 cut(s)	593, 688, 855, 904
BveI	ACCTGC	2 cut(s)	250, 547
Cac8I	GCNNGC	1 cut(s)	825
Cfr13I	GGNCC	2 cut(s)	139, 986
Csp6I	GTAC	5 cut(s)	160, 387, 451, 672, 751
CviJI	RGCY	7 cut(s)	49, 71, 141, 218, 347, 700, 788
CviKI_1	RGCY	7 cut(s)	49, 71, 141, 218, 347, 700, 788
CviQI	GTAC	5 cut(s)	160, 387, 451, 672, 751
DdeI	CTNAG	3 cut(s)	261, 666, 723
DpnI	GATC	7 cut(s)	102, 114, 278, 480, 771, 854, 1023
DpnII	GATC	7 cut(s)	100, 112, 276, 478, 769, 852, 1021
DraI	TTTAAA	1 cut(s)	222
Eam1104I	CTCTTC	3 cut(s)	39, 150, 207
EarI	CTCTTC	3 cut(s)	39, 150, 207
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	51
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	986
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	2 cut(s)	51, 1032
EcoICRI	GAGCTC	1 cut(s)	49
EcoRII	CCWGG	3 cut(s)	368, 707, 982
EcoRV	GATATC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	418
FaqI	GGGAC	1 cut(s)	400
FauNDI	CATATG	1 cut(s)	637
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	5 cut(s)	166, 591, 786, 960, 1061
FokI	GGATG	4 cut(s)	580, 695, 842, 911
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	5 cut(s)	166, 591, 786, 960, 1061
FspBI	CTAG	1 cut(s)	701
GluI	GCNGC	5 cut(s)	166, 591, 786, 960, 1061
HaeIII	GGCC	1 cut(s)	141
HinfI	GANTC	5 cut(s)	88, 148, 199, 413, 440
Hpy166II	GTNNAC	2 cut(s)	190, 387
Hpy188I	TCNGA	7 cut(s)	262, 276, 439, 667, 724, 769, 1030
Hpy188III	TCNNGA	8 cut(s)	98, 118, 152, 175, 203, 331, 482, 953
Hpy8I	GTNNAC	2 cut(s)	190, 387
HpyAV	CCTTC	5 cut(s)	22, 102, 130, 181, 1044
HpyCH4III	ACNGT	4 cut(s)	380, 474, 816, 979
HpyCH4V	TGCA	7 cut(s)	83, 313, 593, 661, 785, 823, 962
HpyF10VI	GCNNNNNNNGC	2 cut(s)	724, 791
HpyF3I	CTNAG	3 cut(s)	261, 666, 723
Kzo9I	GATC	7 cut(s)	100, 112, 276, 478, 769, 852, 1021
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	3 cut(s)	54, 173, 352
Lsp1109I	GCAGC	4 cut(s)	152, 577, 797, 946
LweI	GCATC	3 cut(s)	577, 602, 946
MaeI	CTAG	1 cut(s)	701
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	7 cut(s)	102, 114, 278, 480, 771, 854, 1023
MbiI	CCGCTC	1 cut(s)	727
MboI	GATC	7 cut(s)	100, 112, 276, 478, 769, 852, 1021
MboII	GAAGA	8 cut(s)	56, 57, 167, 224, 405, 587, 724, 950
MflI	RGATCY	2 cut(s)	112, 478
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	6 cut(s)	528, 600, 776, 861, 919, 947
MlyI	GAGTC	2 cut(s)	142, 422
MmeI	TCCRAC	2 cut(s)	456, 606
MnlI	CCTC	5 cut(s)	62, 208, 337, 607, 979
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	5 cut(s)	221, 497, 510, 521, 612
MslI	CAYNNNNRTG	1 cut(s)	39
MspCI	CTTAAG	1 cut(s)	611
MspR9I	CCNGG	3 cut(s)	370, 709, 984
Mva1269I	GAATGC	1 cut(s)	962
MvaI	CCWGG	3 cut(s)	370, 709, 984
MwoI	GCNNNNNNNGC	2 cut(s)	724, 791
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	7 cut(s)	100, 112, 276, 478, 769, 852, 1021
NlaIV	GGNNCC	2 cut(s)	348, 480
PciSI	GCTCTTC	1 cut(s)	39
PctI	GAATGC	1 cut(s)	962
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	3 cut(s)	88, 199, 440
PfoI	TCCNGGA	1 cut(s)	707
PkrI	GCNGC	5 cut(s)	167, 592, 787, 961, 1062
PleI	GAGTC	2 cut(s)	142, 421
PpsI	GAGTC	2 cut(s)	142, 421
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	3 cut(s)	368, 707, 982
PspGI	CCWGG	3 cut(s)	368, 707, 982
PspN4I	GGNNCC	2 cut(s)	348, 480
PspPI	GGNCC	2 cut(s)	139, 986
PsuI	RGATCY	2 cut(s)	112, 478
RsaI	GTAC	5 cut(s)	161, 388, 452, 673, 752
RsaNI	GTAC	5 cut(s)	160, 387, 451, 672, 751
RseI	CAYNNNNRTG	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	5 cut(s)	221, 497, 510, 521, 612
SatI	GCNGC	5 cut(s)	166, 591, 786, 960, 1061
Sau3AI	GATC	7 cut(s)	100, 112, 276, 478, 769, 852, 1021
Sau96I	GGNCC	2 cut(s)	139, 986
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	2 cut(s)	142, 422
ScrFI	CCNGG	3 cut(s)	370, 709, 984
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	8 cut(s)	51, 229, 244, 435, 561, 618, 702, 790
SfaNI	GCATC	3 cut(s)	577, 602, 946
SinI	GGWCC	1 cut(s)	986
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	3 cut(s)	331, 611, 807
SmoI	CTYRAG	3 cut(s)	331, 611, 807
Sse9I	AATT	6 cut(s)	528, 600, 776, 861, 919, 947
SsiI	CCGC	3 cut(s)	718, 727, 1003
SspMI	CTAG	1 cut(s)	701
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	3 cut(s)	368, 707, 982
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	4 cut(s)	380, 474, 816, 979
TaqI	TCGA	2 cut(s)	99, 254
TasI	AATT	6 cut(s)	528, 600, 776, 861, 919, 947
TatI	WGTACW	4 cut(s)	159, 386, 450, 671
TfiI	GAWTC	3 cut(s)	88, 199, 440
Tru1I	TTAA	5 cut(s)	221, 497, 510, 521, 612
Tru9I	TTAA	5 cut(s)	221, 497, 510, 521, 612
TseI	GCWGC	5 cut(s)	165, 590, 785, 959, 1060
TspDTI	ATGAA	6 cut(s)	45, 57, 654, 724, 906, 1026
Vha464I	CTTAAG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	986
XapI	RAATTY	3 cut(s)	776, 919, 947
XcmI	CCANNNNNNNNNTGG	2 cut(s)	357, 472
XmiI	GTMKAC	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	1 cut(s)	701
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.