FvH4_2g27550

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
21837858 .. 21839192
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27550.t1

Sequence Viewer

Length: 1335 bp
ATGTTGAGCCACGCAAAACCTCTGAACCACAATCACACACCTCTCGTGAACCAAGTCCTAACAGCCATGCTCAAAAACCAACCTTTCGACCCAAACCCCTCACCTTCAACTCAACCATGGACCACCGACTCAGTCTCCCAAGTCCTAACCTCCATCCCCACATTCTTCTTCCACTCTCCTCGCTCCATCGGCCGCCAACCCGGCTTCCGCCACCGCGCTCCCTTAAAACAACGCAATCTCCGCCAAGAAACATACAAGTTCCACAACGACATCCTCCTCCTCGGCCCAGCTGCCCACAGAGACCTCAACAAGGTCAATCTTGGAGTCGAAAAAGCCCTCGATTTTTACTACTGGGTCGAAAACCAGTTTGGGTTTCACCACAATGAGCGCACCTGCAGAGAAATGGCCATTGTTTTGGCTAAGGCCAATCGGCTGAAGGCGCTCTGGGATTTTCTTAAAGACATGGCGAGGAGAGGGCCTCTTGTTACCACACAGTCCATTACCTGTTTGATGAAATGCCTAGGAGAAGAGGGATTGGTTAATGAGGCGTTGGCGGCTTTCTATCGAATGAAGCAGTTTCATTGCAAGCCGGATGTGTATGCTTACAATACTATTATATATGCCCTTTGTAGAGTTGGGAATTTCAAGAAGGCGCGATTTTTGCTGGAGCAGATGGAGCTGCCGGGGTTTAGGTGCCCGCCGGATGTATTCACTTATACGATTTTGATAAGTTCTTATTGTAGATATGGGTTGGAGACTGGGTGTAGGAAGGCTACTAGGAGGCGGTTGTGGGAAGCAAACCACATGTTTCGGAATATGGTCTTTAGAGGGTTTGTTCCTGATGTTGTCACTTACAATGCCTTGATCAATGGCTGTTGCAAGAATTATAGGATAGAGAGGGCGTTGGAATTGTTTGAGGATATGATGAAGAGGGATTGTACCCCCAACCGGGTTACTTATGATTCATTTATTAGGTACTATGCTGCTGTTAATGAGATTGATAAGGCTGTGGATATGTTAAGAAGGATGCAGGATATGAATCATGGACTAGCTACTTCGAGTTCGTATACTCCAATAATTCATGCCTTGTGTGAGGCGGGAAGGGCTACAGAGGCCCGGGATTTTCTTGTTGAGTTGGTTGATGGAGGGTCAATACCTAGAGAATATACTTATAACTTGGTTTGCAATGCACTGAGTTCAGCTGGAGAGGTCAATGTGCTTGATGATGGCCTGCGGGAAAGAATAGAAGACGGTATGCAGAGGAGATATAAGCACATGATGAAAGTGAAGCCAATAATGACTCGCAAAGGGTATGATAACATGGTGAAATCTTGA

Protein Analysis

445

Amino Acids

51.39

Weight (kDa)

9.26

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 166 - 211 2.9e-09 PPR repeat family
PPR_1 PF12854 194 - 226 1.7e-09 PPR repeat
PPR_2 PF13041 197 - 248 2.6e-13 PPR repeat family
PPR_1 PF12854 232 - 250 2e-06 PPR repeat
PPR_2 PF13041 261 - 294 1.3e-08 PPR repeat family
PPR_long PF17177 266 - 373 3e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 269 - 327 7.4e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 276 - 308 2.9e-13 PPR repeat
PPR_2 PF13041 280 - 325 4.4e-17 PPR repeat family
PPR PF01535 283 - 313 1.1e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1173
AarI CACCTGC 1 cut(s) 401
Acc36I ACCTGC 1 cut(s) 401
AccB1I GGYRCC 1 cut(s) 693
AccI GTMKAC 1 cut(s) 1067
AccII CGCG 2 cut(s) 216, 655
AciI CCGC 9 cut(s) 193, 208, 214, 241, 554, 698, 784, 1097, 1234
AcoI YGGCCR 2 cut(s) 190, 405
AcsI RAATTY 1 cut(s) 640
AcuI CTGAAG 1 cut(s) 455
AfaI GTAC 2 cut(s) 940, 977
AfiI CCNNNNNNNGG 3 cut(s) 310, 948, 949
AflIII ACRYGT 1 cut(s) 804
AgsI TTSAA 2 cut(s) 108, 646
AjuI GAANNNNNNNTTGG 2 cut(s) 351, 383
AluBI AGCT 4 cut(s) 290, 679, 1052, 1202
AluI AGCT 4 cut(s) 290, 679, 1052, 1202
Alw26I GTCTC 3 cut(s) 139, 294, 749
Ama87I CYCGRG 1 cut(s) 1116
AoxI GGCC 7 cut(s) 190, 283, 405, 423, 476, 1113, 1228
ApeKI GCWGC 3 cut(s) 290, 679, 983
ApoI RAATTY 1 cut(s) 640
AspA2I CCTAGG 1 cut(s) 520
AspLEI GCGC 4 cut(s) 218, 390, 442, 655
AspS9I GGNCC 4 cut(s) 120, 284, 476, 1114
AsuC2I CCSGG 5 cut(s) 201, 684, 950, 1117, 1118
AsuHPI GGTGA 2 cut(s) 93, 368
AvaI CYCGRG 1 cut(s) 1116
AvaII GGWCC 1 cut(s) 120
AvrII CCTAGG 1 cut(s) 520
BaeGI GKGCMC 1 cut(s) 698
BalI TGGCCA 1 cut(s) 407
BanI GGYRCC 1 cut(s) 693
BauI CACGAG 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 1254
BbvI GCAGC 3 cut(s) 277, 666, 970
BccI CCATC 5 cut(s) 161, 194, 667, 1136, 1220
BclI TGATCA 1 cut(s) 864
BcnI CCSGG 5 cut(s) 201, 684, 950, 1117, 1118
BcoDI GTCTC 3 cut(s) 139, 294, 749
BfaI CTAG 4 cut(s) 521, 777, 1049, 1158
BfmI CTRYAG 2 cut(s) 394, 1107
BfoI RGCGCY 1 cut(s) 443
BfuAI ACCTGC 1 cut(s) 401
BglI GCCNNNNNGGC 1 cut(s) 201
BisI GCNGC 5 cut(s) 193, 291, 555, 680, 984
BlnI CCTAGG 1 cut(s) 520
BlsI GCNGC 5 cut(s) 194, 292, 556, 681, 985
Bme1390I CCNGG 5 cut(s) 201, 684, 950, 1117, 1118
Bme18I GGWCC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 1116
BmgT120I GGNCC 4 cut(s) 120, 284, 476, 1114
BmiI GGNNCC 1 cut(s) 695
BmrFI CCNGG 5 cut(s) 201, 684, 950, 1117, 1118
BmrI ACTGGG 2 cut(s) 361, 768
BmsI GCATC 1 cut(s) 1017
BmuI ACTGGG 2 cut(s) 361, 768
BpiI GAAGAC 1 cut(s) 1254
BplI GAGNNNNNCTC 2 cut(s) 463, 495
BpmI CTGGAG 2 cut(s) 686, 1224
Bpu10I CCTNAGC 1 cut(s) 420
BpuMI CCSGG 5 cut(s) 201, 684, 950, 1117, 1118
BsaBI GATNNNNATC 1 cut(s) 1038
BsaI GGTCTC 1 cut(s) 294
BsaJI CCNNGG 5 cut(s) 116, 280, 520, 683, 1116
BsaXI ACNNNNNCTCC 6 cut(s) 119, 149, 222, 252, 746, 776
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 948, 949
Bse1I ACTGG 3 cut(s) 356, 364, 763
Bse3DI GCAATG 2 cut(s) 580, 1192
Bse8I GATNNNNATC 1 cut(s) 1038
BseDI CCNNGG 5 cut(s) 116, 280, 520, 683, 1116
BseGI GGATG 5 cut(s) 153, 270, 598, 709, 1032
BseJI GATNNNNATC 1 cut(s) 1038
BseLI CCNNNNNNNGG 3 cut(s) 310, 948, 949
BseMI GCAATG 2 cut(s) 580, 1192
BseMII CTCAG 2 cut(s) 144, 1184
BseNI ACTGG 3 cut(s) 356, 364, 763
BseRI GAGGAG 5 cut(s) 168, 266, 269, 484, 1276
BseSI GKGCMC 1 cut(s) 698
BseX3I CGGCCG 1 cut(s) 190
BseXI GCAGC 3 cut(s) 277, 666, 970
BseYI CCCAGC 1 cut(s) 286
Bsh1236I CGCG 2 cut(s) 216, 655
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 7 cut(s) 192, 285, 407, 425, 478, 1115, 1230
BshNI GGYRCC 1 cut(s) 693
BsiEI CGRYCG 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 1116
BsiSI CCGG 6 cut(s) 201, 590, 683, 701, 949, 1117
BslI CCNNNNNNNGG 3 cut(s) 310, 948, 949
BsmAI GTCTC 3 cut(s) 139, 294, 749
BsnI GGCC 7 cut(s) 192, 285, 407, 425, 478, 1115, 1230
Bso31I GGTCTC 1 cut(s) 294
BsoBI CYCGRG 1 cut(s) 1116
Bsp1286I GDGCHC 1 cut(s) 698
Bsp143I GATC 1 cut(s) 864
Bsp19I CCATGG 1 cut(s) 116
BspACI CCGC 9 cut(s) 193, 208, 214, 241, 554, 698, 784, 1097, 1234
BspANI GGCC 7 cut(s) 192, 285, 407, 425, 478, 1115, 1230
BspCNI CTCAG 2 cut(s) 143, 1185
BspFNI CGCG 2 cut(s) 216, 655
BspLI GGNNCC 1 cut(s) 695
BspMAI CTGCAG 1 cut(s) 398
BspMI ACCTGC 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 693
BspTNI GGTCTC 1 cut(s) 294
BsrDI GCAATG 2 cut(s) 580, 1192
BsrI ACTGG 3 cut(s) 356, 364, 763
BssECI CCNNGG 5 cut(s) 116, 280, 520, 683, 1116
BssMI GATC 1 cut(s) 864
BssNAI GTATAC 1 cut(s) 1068
BssSI CACGAG 1 cut(s) 44
BssT1I CCWWGG 2 cut(s) 116, 520
Bst1107I GTATAC 1 cut(s) 1068
Bst2BI CACGAG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 495, 1253
Bst6I CTCTTC 2 cut(s) 522, 923
BstC8I GCNNGC 3 cut(s) 587, 698, 1232
BstDEI CTNAG 3 cut(s) 130, 420, 1193
BstDSI CCRYGG 1 cut(s) 116
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 5 cut(s) 153, 270, 598, 709, 1032
BstFNI CGCG 2 cut(s) 216, 655
BstH2I RGCGCY 1 cut(s) 443
BstHHI GCGC 4 cut(s) 218, 390, 442, 655
BstKTI GATC 1 cut(s) 867
BstMAI GTCTC 3 cut(s) 139, 294, 749
BstMBI GATC 1 cut(s) 864
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 9 cut(s) 189, 201, 240, 439, 554, 661, 676, 1103, 1112
BstNSI RCATGY 1 cut(s) 808
BstSCI CCNGG 5 cut(s) 199, 682, 948, 1115, 1116
BstSFI CTRYAG 2 cut(s) 394, 1107
BstSLI GKGCMC 1 cut(s) 698
BstUI CGCG 2 cut(s) 216, 655
BstV1I GCAGC 3 cut(s) 277, 666, 970
BstV2I GAAGAC 1 cut(s) 1254
BstXI CCANNNNNNTGG 1 cut(s) 415
BstZ17I GTATAC 1 cut(s) 1068
BstZI CGGCCG 1 cut(s) 190
BsuRI GGCC 7 cut(s) 192, 285, 407, 425, 478, 1115, 1230
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 5 cut(s) 153, 270, 598, 709, 1032
BtsIMutI CAGTG 1 cut(s) 1190
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 3 cut(s) 587, 698, 1232
CfoI GCGC 4 cut(s) 218, 390, 442, 655
Cfr13I GGNCC 4 cut(s) 120, 284, 476, 1114
Cfr9I CCCGGG 1 cut(s) 1116
Csp6I GTAC 2 cut(s) 939, 976
CviAII CATG 8 cut(s) 67, 117, 463, 805, 1043, 1082, 1276, 1321
CviQI GTAC 2 cut(s) 939, 976
DdeI CTNAG 3 cut(s) 130, 420, 1193
DpnI GATC 1 cut(s) 866
DpnII GATC 1 cut(s) 864
EaeI YGGCCR 2 cut(s) 190, 405
EagI CGGCCG 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 522, 923
EarI CTCTTC 2 cut(s) 522, 923
EciI GGCGGA 2 cut(s) 197, 230
EclXI CGGCCG 1 cut(s) 190
Eco130I CCWWGG 2 cut(s) 116, 520
Eco31I GGTCTC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 120
Eco52I CGGCCG 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 1116
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 476
EcoT14I CCWWGG 2 cut(s) 116, 520
ErhI CCWWGG 2 cut(s) 116, 520
FaeI CATG 8 cut(s) 70, 120, 466, 808, 1046, 1085, 1279, 1324
FatI CATG 8 cut(s) 66, 116, 462, 804, 1042, 1081, 1275, 1320
FauI CCCGC 3 cut(s) 705, 1090, 1227
FbaI TGATCA 1 cut(s) 864
FblI GTMKAC 1 cut(s) 1067
Fnu4HI GCNGC 5 cut(s) 193, 291, 555, 680, 984
FokI GGATG 5 cut(s) 140, 257, 605, 716, 1039
Fsp4HI GCNGC 5 cut(s) 193, 291, 555, 680, 984
FspBI CTAG 4 cut(s) 521, 777, 1049, 1158
GlaI GCGC 4 cut(s) 217, 389, 441, 654
GluI GCNGC 5 cut(s) 193, 291, 555, 680, 984
GsaI CCCAGC 1 cut(s) 290
GsuI CTGGAG 2 cut(s) 686, 1224
HaeII RGCGCY 1 cut(s) 443
HaeIII GGCC 7 cut(s) 192, 285, 407, 425, 478, 1115, 1230
HapII CCGG 6 cut(s) 201, 590, 683, 701, 949, 1117
HhaI GCGC 4 cut(s) 218, 390, 442, 655
Hin1II CATG 8 cut(s) 70, 120, 466, 808, 1046, 1085, 1279, 1324
Hin6I GCGC 4 cut(s) 216, 388, 440, 653
HinP1I GCGC 4 cut(s) 216, 388, 440, 653
HinfI GANTC 5 cut(s) 128, 324, 962, 1039, 1300
HpaII CCGG 6 cut(s) 201, 590, 683, 701, 949, 1117
HphI GGTGA 2 cut(s) 93, 368
Hpy166II GTNNAC 2 cut(s) 49, 1068
Hpy188I TCNGA 2 cut(s) 24, 813
Hpy188III TCNNGA 4 cut(s) 46, 646, 839, 1332
Hpy8I GTNNAC 2 cut(s) 49, 1068
HpyAV CCTTC 6 cut(s) 114, 430, 643, 763, 1017, 1095
HpyCH4III ACNGT 2 cut(s) 495, 1253
HpyCH4V TGCA 7 cut(s) 396, 585, 879, 1030, 1185, 1190, 1258
HpyF10VI GCNNNNNNNGC 9 cut(s) 189, 201, 240, 439, 554, 661, 676, 1103, 1112
HpyF3I CTNAG 3 cut(s) 130, 420, 1193
Hsp92II CATG 8 cut(s) 70, 120, 466, 808, 1046, 1085, 1279, 1324
HspAI GCGC 4 cut(s) 216, 388, 440, 653
Ksp22I TGATCA 1 cut(s) 864
Kzo9I GATC 1 cut(s) 864
LmnI GCTCC 4 cut(s) 188, 223, 667, 676
Lsp1109I GCAGC 3 cut(s) 277, 666, 970
LweI GCATC 1 cut(s) 1017
MaeI CTAG 4 cut(s) 521, 777, 1049, 1158
MaeIII GTNAC 3 cut(s) 484, 847, 952
MalI GATC 1 cut(s) 866
MboI GATC 1 cut(s) 864
MboII GAAGA 5 cut(s) 157, 160, 539, 940, 1259
MhlI GDGCHC 1 cut(s) 698
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 4 cut(s) 640, 883, 908, 1077
MluNI TGGCCA 1 cut(s) 407
MlyI GAGTC 3 cut(s) 122, 333, 1294
MmeI TCCRAC 2 cut(s) 732, 885
Mox20I TGGCCA 1 cut(s) 407
MscI TGGCCA 1 cut(s) 407
MseI TTAA 5 cut(s) 224, 456, 540, 990, 1019
MslI CAYNNNNRTG 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 407
MspA1I CMGCKG 2 cut(s) 290, 1202
MspI CCGG 6 cut(s) 201, 590, 683, 701, 949, 1117
MspR9I CCNGG 5 cut(s) 201, 684, 950, 1117, 1118
MvnI CGCG 2 cut(s) 216, 655
MwoI GCNNNNNNNGC 9 cut(s) 189, 201, 240, 439, 554, 661, 676, 1103, 1112
NciI CCSGG 5 cut(s) 201, 684, 950, 1117, 1118
NcoI CCATGG 1 cut(s) 116
NdeII GATC 1 cut(s) 864
NlaIII CATG 8 cut(s) 70, 120, 466, 808, 1046, 1085, 1279, 1324
NlaIV GGNNCC 1 cut(s) 695
NmeAIII GCCGAG 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 847
NspI RCATGY 1 cut(s) 808
PaqCI CACCTGC 1 cut(s) 401
PciI ACATGT 1 cut(s) 804
PfeI GAWTC 2 cut(s) 962, 1039
PflFI GACNNNGTC 1 cut(s) 131
PkrI GCNGC 5 cut(s) 194, 292, 556, 681, 985
PleI GAGTC 3 cut(s) 122, 332, 1294
PpsI GAGTC 3 cut(s) 122, 332, 1294
PscI ACATGT 1 cut(s) 804
PsiI TTATAA 1 cut(s) 1173
PspFI CCCAGC 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 695
PspPI GGNCC 4 cut(s) 120, 284, 476, 1114
PstI CTGCAG 1 cut(s) 398
PsyI GACNNNGTC 1 cut(s) 131
PvuII CAGCTG 2 cut(s) 290, 1202
RsaI GTAC 2 cut(s) 940, 977
RsaNI GTAC 2 cut(s) 939, 976
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 5 cut(s) 224, 456, 540, 990, 1019
SatI GCNGC 5 cut(s) 193, 291, 555, 680, 984
Sau3AI GATC 1 cut(s) 864
Sau96I GGNCC 4 cut(s) 120, 284, 476, 1114
SchI GAGTC 3 cut(s) 122, 333, 1294
ScrFI CCNGG 5 cut(s) 201, 684, 950, 1117, 1118
SduI GDGCHC 1 cut(s) 698
SfaNI GCATC 1 cut(s) 1017
SfcI CTRYAG 2 cut(s) 394, 1107
SinI GGWCC 1 cut(s) 120
SmaI CCCGGG 1 cut(s) 1118
SmiMI CAYNNNNRTG 1 cut(s) 381
Sse9I AATT 4 cut(s) 640, 883, 908, 1077
SsiI CCGC 9 cut(s) 193, 208, 214, 241, 554, 698, 784, 1097, 1234
SspMI CTAG 4 cut(s) 521, 777, 1049, 1158
StyD4I CCNGG 5 cut(s) 199, 682, 948, 1115, 1116
StyI CCWWGG 2 cut(s) 116, 520
TaaI ACNGT 2 cut(s) 495, 1253
TaqI TCGA 6 cut(s) 87, 327, 339, 357, 565, 1058
TasI AATT 4 cut(s) 640, 883, 908, 1077
TauI GCSGC 2 cut(s) 195, 557
TfiI GAWTC 2 cut(s) 962, 1039
Tru1I TTAA 5 cut(s) 224, 456, 540, 990, 1019
Tru9I TTAA 5 cut(s) 224, 456, 540, 990, 1019
TscAI CASTG 1 cut(s) 1197
TseFI GTSAC 1 cut(s) 847
TseI GCWGC 3 cut(s) 290, 679, 983
Tsp45I GTSAC 1 cut(s) 847
TspDTI ATGAA 8 cut(s) 527, 569, 584, 941, 954, 1052, 1070, 1295
TspMI CCCGGG 1 cut(s) 1116
TspRI CASTG 1 cut(s) 1197
Tth111I GACNNNGTC 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 120
XagI CCTNNNNNAGG 1 cut(s) 308
XapI RAATTY 1 cut(s) 640
XceI RCATGY 1 cut(s) 808
XmaI CCCGGG 1 cut(s) 1116
XmaJI CCTAGG 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 1067
XspI CTAG 4 cut(s) 521, 777, 1049, 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.