Rh6BG381400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006654
Physical Location & Seq
Reverse (-)
61044515 .. 61045036
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG381400.1

Sequence Viewer

Length: 522 bp
ATGAAATGCCTAGGAGAAGAGGGGTTGGTTAATGAAGCATTGGCGGCTTTCTATAGAATGAAACAGTATCATTGCAAACCGGATGTGTATGCATATAACACAATTATTTACGCTCTTTGTAGAATTGGGAATTTTAAGAAGGCCCGGTTTTTGCTGGAGCAAATGAAGTTGCCCGGGTTTAGATGCCCGCCGGATACATTTACTTACACGATTTTGTTCAGCTCTTATTGTAGATATGGGTTGGAGACTGGGTGTAGGAAAGCCACTAGGAGGCGGTTGTGGGAAGCAAACCACATGTTTCGGAATATGCTCTTTAGAGGGTTTGTTCCTGATGTTGTCACTTACAACGCTTTGATCAATGGTTGTTGCAAGACTTACAGGATAGAGAGGGCGTTGGAGTTGTTTGAGGATATGAAGAAGAGGGATTGTACCCCCAACCGTGTTACTAATGATTCGTTTATTAGATACTATGCTGCTGTTAATGAGATTGATAAGGTTGTTGATATGTTAAGAATGATGTAG

Protein Analysis

173

Amino Acids

20.5

Weight (kDa)

9.23

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 1 - 41 3.1e-08 PPR repeat family
PPR_1 PF12854 24 - 56 9.9e-10 PPR repeat
PPR_2 PF13041 27 - 78 7.6e-14 PPR repeat family
PPR_2 PF13041 91 - 124 5e-09 PPR repeat family
PPR_3 PF13812 99 - 157 3.7e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 106 - 139 7.6e-13 PPR repeat
PPR_2 PF13041 110 - 155 1.9e-16 PPR repeat family
PPR PF01535 113 - 143 3.1e-10 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 44, 188, 274
AcsI RAATTY 1 cut(s) 130
AfaI GTAC 1 cut(s) 430
AfiI CCNNNNNNNGG 1 cut(s) 270
AflIII ACRYGT 1 cut(s) 294
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 473
ApoI RAATTY 1 cut(s) 130
AspA2I CCTAGG 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 3 cut(s) 145, 174, 175
AvaI CYCGRG 1 cut(s) 173
AvrII CCTAGG 1 cut(s) 10
BbvI GCAGC 1 cut(s) 460
BciVI GTATCC 1 cut(s) 187
BclI TGATCA 1 cut(s) 354
BcnI CCSGG 3 cut(s) 145, 174, 175
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 2 cut(s) 11, 267
BfmI CTRYAG 1 cut(s) 52
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 2 cut(s) 45, 474
BlnI CCTAGG 1 cut(s) 10
BlsI GCNGC 2 cut(s) 46, 475
Bme1390I CCNGG 3 cut(s) 145, 174, 175
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 142
BmrFI CCNGG 3 cut(s) 145, 174, 175
BmrI ACTGGG 1 cut(s) 258
BmsI GCATC 1 cut(s) 173
BmuI ACTGGG 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 176
BpuMI CCSGG 3 cut(s) 145, 174, 175
BsaJI CCNNGG 2 cut(s) 10, 173
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse1I ACTGG 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 10, 173
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMI GCAATG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 253
BseXI GCAGC 1 cut(s) 460
BshFI GGCC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 4 cut(s) 80, 145, 174, 191
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 239
BsnI GGCC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 173
Bsp143I GATC 1 cut(s) 354
BspACI CCGC 3 cut(s) 44, 188, 274
BspANI GGCC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 10, 173
BssMI GATC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 66, 440
Bst6I CTCTTC 2 cut(s) 12, 413
BstC8I GCNNGC 1 cut(s) 188
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 1 cut(s) 357
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 1 cut(s) 354
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 3 cut(s) 143, 172, 173
BstSFI CTRYAG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 460
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 142
Cfr9I CCCGGG 1 cut(s) 173
Csp6I GTAC 1 cut(s) 429
CviAII CATG 1 cut(s) 295
CviJI RGCY 4 cut(s) 47, 143, 222, 263
CviKI_1 RGCY 4 cut(s) 47, 143, 222, 263
CviQI GTAC 1 cut(s) 429
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
Eam1104I CTCTTC 2 cut(s) 12, 413
EarI CTCTTC 2 cut(s) 12, 413
Eco130I CCWWGG 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 10
EcoT22I ATGCAT 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 1 cut(s) 298
FatI CATG 1 cut(s) 294
FauI CCCGC 1 cut(s) 195
FbaI TGATCA 1 cut(s) 354
Fnu4HI GCNGC 2 cut(s) 45, 474
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 2 cut(s) 45, 474
FspBI CTAG 2 cut(s) 11, 267
GluI GCNGC 2 cut(s) 45, 474
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 1 cut(s) 143
HapII CCGG 4 cut(s) 80, 145, 174, 191
Hin1II CATG 1 cut(s) 298
HinfI GANTC 1 cut(s) 452
HpaII CCGG 4 cut(s) 80, 145, 174, 191
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 2 cut(s) 66, 440
HpyCH4V TGCA 3 cut(s) 75, 92, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 1 cut(s) 354
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 8 cut(s) 93, 140, 158, 187, 204, 234, 342, 364
Lsp1109I GCAGC 1 cut(s) 460
LweI GCATC 1 cut(s) 173
MaeI CTAG 2 cut(s) 11, 267
MaeIII GTNAC 2 cut(s) 337, 442
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 3 cut(s) 29, 427, 430
MluCI AATT 3 cut(s) 102, 123, 130
MmeI TCCRAC 2 cut(s) 222, 375
MnlI CCTC 6 cut(s) 13, 264, 311, 381, 400, 414
Mph1103I ATGCAT 1 cut(s) 94
MseI TTAA 4 cut(s) 30, 135, 480, 509
MspI CCGG 4 cut(s) 80, 145, 174, 191
MspR9I CCNGG 3 cut(s) 145, 174, 175
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 3 cut(s) 145, 174, 175
NdeII GATC 1 cut(s) 354
NlaIII CATG 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 337
NsiI ATGCAT 1 cut(s) 94
NspI RCATGY 1 cut(s) 298
PciI ACATGT 1 cut(s) 294
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 2 cut(s) 46, 475
PscI ACATGT 1 cut(s) 294
PspPI GGNCC 1 cut(s) 142
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
SaqAI TTAA 4 cut(s) 30, 135, 480, 509
SatI GCNGC 2 cut(s) 45, 474
Sau3AI GATC 1 cut(s) 354
Sau96I GGNCC 1 cut(s) 142
ScrFI CCNGG 3 cut(s) 145, 174, 175
SetI ASST 2 cut(s) 224, 498
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 52
SmaI CCCGGG 1 cut(s) 175
Sse9I AATT 3 cut(s) 102, 123, 130
SsiI CCGC 3 cut(s) 44, 188, 274
SspMI CTAG 2 cut(s) 11, 267
StyD4I CCNGG 3 cut(s) 143, 172, 173
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 66, 440
TasI AATT 3 cut(s) 102, 123, 130
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 4 cut(s) 30, 135, 480, 509
Tru9I TTAA 4 cut(s) 30, 135, 480, 509
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 1 cut(s) 473
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 5 cut(s) 17, 48, 74, 179, 428
TspMI CCCGGG 1 cut(s) 173
XapI RAATTY 1 cut(s) 130
XceI RCATGY 1 cut(s) 298
XmaI CCCGGG 1 cut(s) 173
XmaJI CCTAGG 1 cut(s) 10
XspI CTAG 2 cut(s) 11, 267
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.