Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006997.1

Orthogroup ID

OG0006654

Physical Location & Seq

Genomic Coordinates Forward (+)

15063 .. 15458

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006997.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atggactttgacagcaatgttgctgtattgctagagttaagtaggtctcaaggagaaagtgtggcagatatagcttcagaatgtgttgttttgttgctcaaggcagctccaagggaaggcacagctggtctactaactaatgttccaaaagttacagcaatgcttgagtcttggcatagaagcatatctcatttgttggtgcagcgagtgctacatgcacttggttatgcttgtaggcagtatttgttacatgcaattatattgtcgatgtcgattcctgagattccaagaattgagggcatagtttctgagcttaaaggttcaggtgtacctactttagccactgctgcttttcatgtggctgtggagtttcagcggcttcctcgctgcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0001932 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0007349 GO:0007399 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009555 GO:0009556 GO:0009574 GO:0009653 GO:0009966 GO:0009987 GO:0010245 GO:0010342 GO:0010646 GO:0010975 GO:0015630 GO:0015631 GO:0016043 GO:0019220 GO:0019222 GO:0019953 GO:0022008 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0030054 GO:0030154 GO:0030334 GO:0031323 GO:0031344 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032506 GO:0032872 GO:0032879 GO:0034293 GO:0040012 GO:0042325 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043408 GO:0043934 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045595 GO:0045664 GO:0046328 GO:0048229 GO:0048236 GO:0048583 GO:0048646 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051270 GO:0051301 GO:0051321 GO:0051704 GO:0051960 GO:0055044 GO:0060255 GO:0060284 GO:0061640 GO:0065007 GO:0070302 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090036 GO:0120035 GO:1900744 GO:1902407 GO:1902410 GO:1902531 GO:1903046 GO:1903047 GO:2000026 GO:2000145 GO:2001222

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

131

Amino Acids

14.25

Weight (kDa)

6.5

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77405
fragaria_vesca	FvH4_2g27550
malus_domestica	MD00G1030400.v1.1
prunus_persica	Prupe.1G492400_v2.0.a1
pyrus_communis	pycom15g30800
rosa_chinensis	RchiOBHm_Chr4g0420811 RchiOBHm_Chr4g0420821
rosa_laevigata	RLG00000007736 RLG00000011697
rosa_multiflora	Rmu_co8321563.1_g000001 Rmu_sc0005104.1_g000002 Rmu_sc0006997.1_g000002 Rmu_sc0006997.1_g000003
rosa_roxburghii	Rroxscaffold_5G00363250
rosa_rugosa	Rorug04G0166200 Rorug04G0166300 Rorug06G0261900
rosa_samantha	Rh4AG227600 Rh4BG230600 Rh4BG230700 Rh4BG230800 Rh4CG242600 Rh4CG242700 Rh6BG381400
rosa_wichuraiana	Rw4G019690 Rw6G032550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	130
AciI	CCGC	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	116
AluBI	AGCT	4 cut(s)	74, 107, 125, 313
AluI	AGCT	4 cut(s)	74, 107, 125, 313
Alw26I	GTCTC	1 cut(s)	51
ApeKI	GCWGC	4 cut(s)	104, 202, 347, 387
BbvI	GCAGC	4 cut(s)	116, 214, 334, 374
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	32
BisI	GCNGC	5 cut(s)	105, 203, 348, 377, 388
BlsI	GCNGC	5 cut(s)	106, 204, 349, 378, 389
BpuEI	CTTGAG	3 cut(s)	33, 83, 185
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse3DI	GCAATG	2 cut(s)	22, 165
BseDI	CCNNGG	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	2 cut(s)	22, 165
BseMII	CTCAG	2 cut(s)	270, 300
BseXI	GCAGC	4 cut(s)	116, 214, 334, 374
BsgI	GTGCAG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	51
BspACI	CCGC	1 cut(s)	376
BspCNI	CTCAG	2 cut(s)	271, 301
BspTNI	GGTCTC	1 cut(s)	51
BsrDI	GCAATG	2 cut(s)	22, 165
BssECI	CCNNGG	1 cut(s)	110
BssT1I	CCWWGG	1 cut(s)	110
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstDEI	CTNAG	2 cut(s)	279, 309
BstMAI	GTCTC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 208, 347
BstNSI	RCATGY	3 cut(s)	218, 254, 394
BstV1I	GCAGC	4 cut(s)	116, 214, 334, 374
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	4 cut(s)	215, 251, 356, 391
CviJI	RGCY	7 cut(s)	74, 107, 125, 313, 341, 362, 379
CviKI_1	RGCY	7 cut(s)	74, 107, 125, 313, 341, 362, 379
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	2 cut(s)	279, 309
Eco130I	CCWWGG	1 cut(s)	110
Eco31I	GGTCTC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	4 cut(s)	218, 254, 359, 394
FatI	CATG	4 cut(s)	214, 250, 355, 390
FblI	GTMKAC	1 cut(s)	130
Fnu4HI	GCNGC	5 cut(s)	105, 203, 348, 377, 388
Fsp4HI	GCNGC	5 cut(s)	105, 203, 348, 377, 388
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	5 cut(s)	105, 203, 348, 377, 388
Hin1II	CATG	4 cut(s)	218, 254, 359, 394
HinfI	GANTC	3 cut(s)	167, 274, 283
Hpy166II	GTNNAC	2 cut(s)	131, 329
Hpy188I	TCNGA	2 cut(s)	79, 310
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	2 cut(s)	131, 329
HpyAV	CCTTC	1 cut(s)	110
HpyCH4V	TGCA	4 cut(s)	202, 218, 254, 390
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 208, 347
HpyF3I	CTNAG	2 cut(s)	279, 309
Hsp92II	CATG	4 cut(s)	218, 254, 359, 394
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	3 cut(s)	111, 291, 309
Lsp1109I	GCAGC	4 cut(s)	116, 214, 334, 374
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	151, 246
MluCI	AATT	2 cut(s)	255, 291
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	2 cut(s)	289, 393
MseI	TTAA	2 cut(s)	38, 315
MspA1I	CMGCKG	2 cut(s)	125, 376
MwoI	GCNNNNNNNGC	3 cut(s)	71, 208, 347
NlaIII	CATG	4 cut(s)	218, 254, 359, 394
NspI	RCATGY	3 cut(s)	218, 254, 394
PfeI	GAWTC	2 cut(s)	274, 283
PkrI	GCNGC	5 cut(s)	106, 204, 349, 378, 389
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	38, 315
SatI	GCNGC	5 cut(s)	105, 203, 348, 377, 388
SchI	GAGTC	1 cut(s)	176
SetI	ASST	8 cut(s)	47, 76, 109, 127, 315, 322, 328, 334
SmlI	CTYRAG	3 cut(s)	48, 98, 164
SmoI	CTYRAG	3 cut(s)	48, 98, 164
Sse9I	AATT	2 cut(s)	255, 291
SsiI	CCGC	1 cut(s)	376
SspMI	CTAG	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	110
TaqI	TCGA	2 cut(s)	266, 272
TasI	AATT	2 cut(s)	255, 291
TauI	GCSGC	1 cut(s)	379
TfiI	GAWTC	2 cut(s)	274, 283
Tru1I	TTAA	2 cut(s)	38, 315
Tru9I	TTAA	2 cut(s)	38, 315
TscAI	CASTG	1 cut(s)	349
TseI	GCWGC	4 cut(s)	104, 202, 347, 387
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	349
XceI	RCATGY	3 cut(s)	218, 254, 394
XmiI	GTMKAC	1 cut(s)	130
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.