Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8321563.1

Orthogroup ID

OG0006654

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 843

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8321563.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atggctgtcgttttggctaaagggaatcggttgaaggccctctgggattttctgaaagacatgtcgaagagagggagtggtgaaagccctcctcttgtaacgacacagtccatcacctgtttgatgaaatgcctaggagaagagggattggtcaatgaagcattggcggctttctataggatgaagcagtttcattgcaaaccggatgtgtatgcttacaacactattatttacgcgctttgcagggttggggatttcaagaaggctcggtttttgctggagcagatggagctgccgggttttagatgcccgccggatacattcacttacacgattttgataagctcttattgtagatatgggttggagactgggtgcaggaaggccactaggaggaggttgtgggaagcaaaccacatgtttcggaatatgctctttagagggtttgttcctgatgttgttacttacaatgctttgatcaatggttgttgcaagacttataggatagagagggcgttggagttgtttggggatatgaagaagagggattgtacccccaaccgcgttacttatgattcgtttattagatactatgctgctgttaatgagattgacaaggctgtggatatgttaagaaggatgcagaatatgaatcatggattcgccacttcaagttcgtatactccaatcattcatgccatgtgtgaagcaggaagggttacagaggcttggggttttcttgttgagttggttgatggagggtcaatacctagagaatatacttacaaattagtttgcaatgcaatgagttcagctggagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

274

Amino Acids

31.34

Weight (kDa)

8.94

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77405
fragaria_vesca	FvH4_2g27550
malus_domestica	MD00G1030400.v1.1
prunus_persica	Prupe.1G492400_v2.0.a1
pyrus_communis	pycom15g30800
rosa_chinensis	RchiOBHm_Chr4g0420811 RchiOBHm_Chr4g0420821
rosa_laevigata	RLG00000007736 RLG00000011697
rosa_multiflora	Rmu_co8321563.1_g000001 Rmu_sc0005104.1_g000002 Rmu_sc0006997.1_g000002 Rmu_sc0006997.1_g000003
rosa_roxburghii	Rroxscaffold_5G00363250
rosa_rugosa	Rorug04G0166200 Rorug04G0166300 Rorug06G0261900
rosa_samantha	Rh4AG227600 Rh4BG230600 Rh4BG230700 Rh4BG230800 Rh4CG242600 Rh4CG242700 Rh6BG381400
rosa_wichuraiana	Rw4G019690 Rw6G032550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	680
AccII	CGCG	2 cut(s)	236, 564
AciI	CCGC	3 cut(s)	167, 311, 562
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	1 cut(s)	393
AflIII	ACRYGT	2 cut(s)	60, 417
AgsI	TTSAA	3 cut(s)	34, 259, 672
AluBI	AGCT	3 cut(s)	292, 345, 815
AluI	AGCT	3 cut(s)	292, 345, 815
Alw26I	GTCTC	1 cut(s)	362
AoxI	GGCC	2 cut(s)	36, 384
ApeKI	GCWGC	2 cut(s)	292, 596
AspA2I	CCTAGG	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	92, 106
AvrII	CCTAGG	1 cut(s)	133
BbvI	GCAGC	2 cut(s)	279, 583
BccI	CCATC	3 cut(s)	119, 280, 749
BciVI	GTATCC	1 cut(s)	310
BclI	TGATCA	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	3 cut(s)	134, 390, 771
BfmI	CTRYAG	1 cut(s)	175
BfuI	GTATCC	1 cut(s)	310
BisI	GCNGC	3 cut(s)	168, 293, 597
BlnI	CCTAGG	1 cut(s)	133
BlsI	GCNGC	3 cut(s)	169, 294, 598
Bme1390I	CCNGG	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	297
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	2 cut(s)	296, 630
BmuI	ACTGGG	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse1I	ACTGG	1 cut(s)	376
Bse3DI	GCAATG	3 cut(s)	193, 805, 810
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	3 cut(s)	186, 211, 645
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseMI	GCAATG	3 cut(s)	193, 805, 810
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	2 cut(s)	81, 409
BseXI	GCAGC	2 cut(s)	279, 583
BsgI	GTGCAG	1 cut(s)	397
Bsh1236I	CGCG	2 cut(s)	236, 564
BshFI	GGCC	2 cut(s)	38, 386
BsiSI	CCGG	3 cut(s)	203, 296, 314
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmAI	GTCTC	1 cut(s)	362
BsnI	GGCC	2 cut(s)	38, 386
Bsp143I	GATC	1 cut(s)	477
BspACI	CCGC	3 cut(s)	167, 311, 562
BspANI	GGCC	2 cut(s)	38, 386
BspFNI	CGCG	2 cut(s)	236, 564
BsrDI	GCAATG	3 cut(s)	193, 805, 810
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	477
BssNAI	GTATAC	1 cut(s)	681
BssT1I	CCWWGG	1 cut(s)	133
Bst1107I	GTATAC	1 cut(s)	681
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	3 cut(s)	62, 135, 536
BstC8I	GCNNGC	1 cut(s)	311
BstF5I	GGATG	3 cut(s)	186, 211, 645
BstFNI	CGCG	2 cut(s)	236, 564
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	1 cut(s)	480
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	1 cut(s)	477
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 289
BstNSI	RCATGY	2 cut(s)	64, 421
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	175
BstUI	CGCG	2 cut(s)	236, 564
BstV1I	GCAGC	2 cut(s)	279, 583
BstZ17I	GTATAC	1 cut(s)	681
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	2 cut(s)	38, 386
BtsCI	GGATG	3 cut(s)	186, 211, 645
Cac8I	GCNNGC	1 cut(s)	311
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	552
CviAII	CATG	5 cut(s)	61, 418, 656, 695, 700
CviQI	GTAC	1 cut(s)	552
DpnI	GATC	1 cut(s)	479
DpnII	GATC	1 cut(s)	477
Eam1104I	CTCTTC	3 cut(s)	62, 135, 536
EarI	CTCTTC	3 cut(s)	62, 135, 536
Eco130I	CCWWGG	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	5 cut(s)	64, 421, 659, 698, 703
FatI	CATG	5 cut(s)	60, 417, 655, 694, 699
FauI	CCCGC	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	477
FblI	GTMKAC	1 cut(s)	680
Fnu4HI	GCNGC	3 cut(s)	168, 293, 597
FokI	GGATG	3 cut(s)	193, 218, 652
Fsp4HI	GCNGC	3 cut(s)	168, 293, 597
FspBI	CTAG	3 cut(s)	134, 390, 771
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	3 cut(s)	168, 293, 597
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	38, 386
HapII	CCGG	3 cut(s)	203, 296, 314
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	5 cut(s)	64, 421, 659, 698, 703
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HinfI	GANTC	4 cut(s)	25, 575, 652, 660
HpaII	CCGG	3 cut(s)	203, 296, 314
HphI	GGTGA	2 cut(s)	92, 106
Hpy166II	GTNNAC	1 cut(s)	681
Hpy188I	TCNGA	2 cut(s)	54, 426
Hpy188III	TCNNGA	2 cut(s)	259, 452
Hpy8I	GTNNAC	1 cut(s)	681
HpyAV	CCTTC	5 cut(s)	28, 256, 376, 630, 708
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4V	TGCA	7 cut(s)	198, 243, 378, 492, 643, 798, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 289
Hsp92II	CATG	5 cut(s)	64, 421, 659, 698, 703
HspAI	GCGC	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	1 cut(s)	477
LmnI	GCTCC	2 cut(s)	280, 289
Lsp1109I	GCAGC	2 cut(s)	279, 583
LweI	GCATC	2 cut(s)	296, 630
MaeI	CTAG	3 cut(s)	134, 390, 771
MaeIII	GTNAC	4 cut(s)	97, 460, 565, 718
MalI	GATC	1 cut(s)	479
MboI	GATC	1 cut(s)	477
MboII	GAAGA	4 cut(s)	79, 152, 550, 553
MluCI	AATT	1 cut(s)	788
MmeI	TCCRAC	2 cut(s)	345, 498
MseI	TTAA	2 cut(s)	603, 632
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	3 cut(s)	203, 296, 314
MspR9I	CCNGG	1 cut(s)	297
MvnI	CGCG	2 cut(s)	236, 564
MwoI	GCNNNNNNNGC	2 cut(s)	167, 289
NciI	CCSGG	1 cut(s)	297
NdeII	GATC	1 cut(s)	477
NlaIII	CATG	5 cut(s)	64, 421, 659, 698, 703
NspI	RCATGY	2 cut(s)	64, 421
PciI	ACATGT	2 cut(s)	60, 417
PfeI	GAWTC	4 cut(s)	25, 575, 652, 660
PflFI	GACNNNGTC	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	169, 294, 598
PscI	ACATGT	2 cut(s)	60, 417
PspPI	GGNCC	1 cut(s)	37
PsyI	GACNNNGTC	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
SaqAI	TTAA	2 cut(s)	603, 632
SatI	GCNGC	3 cut(s)	168, 293, 597
Sau3AI	GATC	1 cut(s)	477
Sau96I	GGNCC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	6 cut(s)	119, 294, 347, 401, 772, 817
SfaNI	GCATC	2 cut(s)	296, 630
SfcI	CTRYAG	1 cut(s)	175
Sse9I	AATT	1 cut(s)	788
SsiI	CCGC	3 cut(s)	167, 311, 562
SspMI	CTAG	3 cut(s)	134, 390, 771
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	788
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	4 cut(s)	25, 575, 652, 660
Tru1I	TTAA	2 cut(s)	603, 632
Tru9I	TTAA	2 cut(s)	603, 632
TseI	GCWGC	2 cut(s)	292, 596
TspDTI	ATGAA	7 cut(s)	140, 171, 182, 197, 551, 665, 683
Tth111I	GACNNNGTC	1 cut(s)	106
XceI	RCATGY	2 cut(s)	64, 421
XmaJI	CCTAGG	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	680
XspI	CTAG	3 cut(s)	134, 390, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.