RchiOBHm_Chr4g0420821

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0006654
Physical Location & Seq
Forward (+)
46519894 .. 46521721
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39053

Sequence Viewer

Length: 558 bp
ATGGCTACCTCAACAGTCAAGTGCGCGGCTGCACTCCTTTGTTTACAAATGGAGCAACTGTTTGATTTGTATGATGTATCTAGTATAAAGCAATTTTCAGTCAGCATCAGGCACATGGATTTGGCCAGGGATGACTTTCAAATCACTCTTCTTCGAATTCTTGAATCTGTCGCCGACGAGTCGCTTGTAATTCTCAAAAGCCCTGATATTTTTACCCGTGAGGTTCTCCCCAGTTTGGCTGTTCTGTATAAGGGCAACAAGGATGGTGACACCAGGTTTCTGTGCTTCAAAATCTTGTTTGATGTGATGGTAATTTTTCTTAATGAACAATCTGAAGATGAGCCAGGGTCCAAAGAATTGCAATCCATATCCAATACAAACTTTCTTCCTCTCTACCCTTCCTTGATTGAAGACGAAGATCCAATCCCCTTGTACGCGCAAAAGCTGCTTGTGATGCTGATTGATTATAGTTACATCAAAAGTGCAGACATTCTACATCTGAAGATAGTTTGCAATGCTTTGAGTTTTTGCTGGGCGATCTCTCAAGTGCAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0001932 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0007349 GO:0007399 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009555 GO:0009556 GO:0009574 GO:0009653 GO:0009966 GO:0009987 GO:0010245 GO:0010342 GO:0010646 GO:0010975 GO:0015630 GO:0015631 GO:0016043 GO:0019220 GO:0019222 GO:0019953 GO:0022008 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0030054 GO:0030154 GO:0030334 GO:0031323 GO:0031344 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032506 GO:0032872 GO:0032879 GO:0034293 GO:0040012 GO:0042325 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043408 GO:0043934 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045595 GO:0045664 GO:0046328 GO:0048229 GO:0048236 GO:0048583 GO:0048646 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051270 GO:0051301 GO:0051321 GO:0051704 GO:0051960 GO:0055044 GO:0060255 GO:0060284 GO:0061640 GO:0065007 GO:0070302 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090036 GO:0120035 GO:1900744 GO:1902407 GO:1902410 GO:1902531 GO:1903046 GO:1903047 GO:2000026 GO:2000145 GO:2001222
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

185

Amino Acids

21.01

Weight (kDa)

4.55

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_ULK4 PF23606 29 - 160 3.7e-46 Serine/threonine-protein kinase ULK4-like, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 26, 437
AciI CCGC 1 cut(s) 26
AclWI GGATC 1 cut(s) 413
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 1 cut(s) 156
AcuI CTGAAG 2 cut(s) 354, 521
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 4 cut(s) 140, 164, 289, 410
AjnI CCWGG 3 cut(s) 125, 272, 343
AluBI AGCT 1 cut(s) 445
AluI AGCT 1 cut(s) 445
AlwI GGATC 1 cut(s) 413
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 2 cut(s) 29, 445
ApoI RAATTY 1 cut(s) 156
AspLEI GCGC 2 cut(s) 26, 439
AspS9I GGNCC 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 278
AsuII TTCGAA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 348
BalI TGGCCA 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 417
BbvI GCAGC 2 cut(s) 16, 432
BccI CCATC 2 cut(s) 257, 301
BciT130I CCWGG 3 cut(s) 127, 274, 345
BfaI CTAG 1 cut(s) 81
BisI GCNGC 3 cut(s) 27, 30, 446
BlsI GCNGC 3 cut(s) 28, 31, 447
Bme1390I CCNGG 3 cut(s) 127, 274, 345
Bme18I GGWCC 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 348
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 3 cut(s) 127, 274, 345
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 2 cut(s) 114, 444
BmuI ACTGGG 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 417
Bpu14I TTCGAA 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 528
BsaJI CCNNGG 2 cut(s) 126, 344
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 520
BseBI CCWGG 3 cut(s) 127, 274, 345
BseDI CCNNGG 2 cut(s) 126, 344
BseGI GGATG 2 cut(s) 136, 268
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 520
BseNI ACTGG 1 cut(s) 231
BseXI GCAGC 2 cut(s) 16, 432
BseYI CCCAGC 1 cut(s) 531
BsgI GTGCAG 2 cut(s) 15, 504
Bsh1236I CGCG 2 cut(s) 26, 437
BshFI GGCC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 235
BsnI GGCC 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 154
Bsp143I GATC 2 cut(s) 418, 537
BspACI CCGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 125
BspFNI CGCG 2 cut(s) 26, 437
BspLI GGNNCC 1 cut(s) 349
BspPI GGATC 1 cut(s) 413
BspT104I TTCGAA 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 520
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 2 cut(s) 126, 344
BssMI GATC 2 cut(s) 418, 537
Bst2UI CCWGG 3 cut(s) 127, 274, 345
Bst4CI ACNGT 2 cut(s) 16, 60
Bst6I CTCTTC 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 445
BstBI TTCGAA 1 cut(s) 154
BstF5I GGATG 2 cut(s) 136, 268
BstFNI CGCG 2 cut(s) 26, 437
BstHHI GCGC 2 cut(s) 26, 439
BstKTI GATC 2 cut(s) 421, 540
BstMBI GATC 2 cut(s) 418, 537
BstMWI GCNNNNNNNGC 2 cut(s) 445, 454
BstNI CCWGG 3 cut(s) 127, 274, 345
BstSCI CCNGG 3 cut(s) 125, 272, 343
BstUI CGCG 2 cut(s) 26, 437
BstV1I GCAGC 2 cut(s) 16, 432
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 2 cut(s) 136, 268
CfoI GCGC 2 cut(s) 26, 439
Cfr13I GGNCC 1 cut(s) 348
CsiI ACCWGGT 1 cut(s) 272
Csp6I GTAC 1 cut(s) 433
CviAII CATG 1 cut(s) 115
CviJI RGCY 7 cut(s) 5, 29, 125, 201, 239, 343, 445
CviKI_1 RGCY 7 cut(s) 5, 29, 125, 201, 239, 343, 445
CviQI GTAC 1 cut(s) 433
DpnI GATC 2 cut(s) 420, 539
DpnII GATC 2 cut(s) 418, 537
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 348
Eco57I CTGAAG 2 cut(s) 354, 521
EcoRI GAATTC 1 cut(s) 156
EcoRII CCWGG 3 cut(s) 125, 272, 343
FaeI CATG 1 cut(s) 118
FaiI YATR 6 cut(s) 72, 86, 116, 249, 368, 468
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 27, 30, 446
FokI GGATG 2 cut(s) 143, 275
Fsp4HI GCNGC 3 cut(s) 27, 30, 446
FspBI CTAG 1 cut(s) 81
GlaI GCGC 2 cut(s) 25, 438
GluI GCNGC 3 cut(s) 27, 30, 446
GsaI CCCAGC 1 cut(s) 535
HaeIII GGCC 1 cut(s) 125
HhaI GCGC 2 cut(s) 26, 439
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 2 cut(s) 24, 437
HinP1I GCGC 2 cut(s) 24, 437
HinfI GANTC 2 cut(s) 164, 179
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 2 cut(s) 334, 501
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 44
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 408
HpyCH4III ACNGT 2 cut(s) 16, 60
HpyCH4V TGCA 5 cut(s) 32, 361, 485, 513, 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 445, 454
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 2 cut(s) 24, 437
Kzo9I GATC 2 cut(s) 418, 537
LmnI GCTCC 1 cut(s) 52
Lsp1109I GCAGC 2 cut(s) 16, 432
LweI GCATC 2 cut(s) 114, 444
MabI ACCWGGT 1 cut(s) 272
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 266, 470
MalI GATC 2 cut(s) 420, 539
MboI GATC 2 cut(s) 418, 537
MboII GAAGA 7 cut(s) 140, 143, 347, 377, 422, 428, 514
MflI RGATCY 1 cut(s) 418
MlsI TGGCCA 1 cut(s) 125
MluCI AATT 5 cut(s) 92, 156, 189, 312, 356
MluNI TGGCCA 1 cut(s) 125
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 3 cut(s) 19, 214, 399
Mox20I TGGCCA 1 cut(s) 125
MscI TGGCCA 1 cut(s) 125
MseI TTAA 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 125
MspR9I CCNGG 3 cut(s) 127, 274, 345
MvaI CCWGG 3 cut(s) 127, 274, 345
MvnI CGCG 2 cut(s) 26, 437
MwoI GCNNNNNNNGC 2 cut(s) 445, 454
NdeII GATC 2 cut(s) 418, 537
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 266
NspV TTCGAA 1 cut(s) 154
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 3 cut(s) 28, 31, 447
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
Psp6I CCWGG 3 cut(s) 125, 272, 343
PspFI CCCAGC 1 cut(s) 531
PspGI CCWGG 3 cut(s) 125, 272, 343
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 348
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 3 cut(s) 27, 30, 446
Sau3AI GATC 2 cut(s) 418, 537
Sau96I GGNCC 1 cut(s) 348
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 3 cut(s) 127, 274, 345
SetI ASST 4 cut(s) 11, 225, 278, 447
SexAI ACCWGGT 1 cut(s) 272
SfaNI GCATC 2 cut(s) 114, 444
SfuI TTCGAA 1 cut(s) 154
SinI GGWCC 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
Sse9I AATT 5 cut(s) 92, 156, 189, 312, 356
SsiI CCGC 1 cut(s) 26
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 3 cut(s) 125, 272, 343
TaaI ACNGT 2 cut(s) 16, 60
TaqI TCGA 1 cut(s) 154
TasI AATT 5 cut(s) 92, 156, 189, 312, 356
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 2 cut(s) 29, 445
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 339
VpaK11BI GGWCC 1 cut(s) 348
XapI RAATTY 1 cut(s) 156
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.