Rh4BG230800

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0006654
Physical Location & Seq
Forward (+)
39523159 .. 39523554
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG230800.1

Sequence Viewer

Length: 396 bp
ATGGACTTTGACAGCAATGTTGCTGTATTGCTAGAGTTAAGTAGGTCTCACGGAGGAAGTGTCGCAGATATAGCTTCAGAATGTGTTGTTTTGTTGCTCAAGGCAGCTCCAAGGGAAGGCACAGCTGGTCTACTAACTAATGTTCCAAAAGTTACTGCAATGCTTGAGTCTTGGCATAGAGGCATATCTCATTTGTTGGTGCAGCGAGTGCTACATGCACTTGGTTATGCTTGTAGGCAGTATTTGTTACATGCAATGATATTGTCGATGTCGATTCCTGAGATTCCAAGAATTGAGGGCATAGTTTCTGAGCTTAAAGGTTCAGGTGTACCTACTTTAGCCACTGCTGCTTTTCATGTGGCTCTGGAGTTTCAGCAGCTTCCTCGCTGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0001932 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0007349 GO:0007399 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009555 GO:0009556 GO:0009574 GO:0009653 GO:0009966 GO:0009987 GO:0010245 GO:0010342 GO:0010646 GO:0010975 GO:0015630 GO:0015631 GO:0016043 GO:0019220 GO:0019222 GO:0019953 GO:0022008 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0030054 GO:0030154 GO:0030334 GO:0031323 GO:0031344 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032506 GO:0032872 GO:0032879 GO:0034293 GO:0040012 GO:0042325 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043408 GO:0043934 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045595 GO:0045664 GO:0046328 GO:0048229 GO:0048236 GO:0048583 GO:0048646 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051270 GO:0051301 GO:0051321 GO:0051704 GO:0051960 GO:0055044 GO:0060255 GO:0060284 GO:0061640 GO:0065007 GO:0070302 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090036 GO:0120035 GO:1900744 GO:1902407 GO:1902410 GO:1902531 GO:1903046 GO:1903047 GO:2000026 GO:2000145 GO:2001222
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

131

Amino Acids

14.16

Weight (kDa)

6.57

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_RUK PF24970 1 - 130 5.6e-53 RUNKEL ARM-repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 116
AluBI AGCT 5 cut(s) 74, 107, 125, 313, 379
AluI AGCT 5 cut(s) 74, 107, 125, 313, 379
Alw26I GTCTC 1 cut(s) 51
ApeKI GCWGC 5 cut(s) 104, 202, 347, 376, 387
BbvI GCAGC 5 cut(s) 116, 214, 334, 374, 388
BcgI CGANNNNNNTGC 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 51
BfaI CTAG 1 cut(s) 32
BisI GCNGC 5 cut(s) 105, 203, 348, 377, 388
BlsI GCNGC 5 cut(s) 106, 204, 349, 378, 389
BpmI CTGGAG 1 cut(s) 386
BpuEI CTTGAG 2 cut(s) 83, 185
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse3DI GCAATG 3 cut(s) 22, 165, 261
BseDI CCNNGG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMI GCAATG 3 cut(s) 22, 165, 261
BseMII CTCAG 2 cut(s) 270, 300
BseXI GCAGC 5 cut(s) 116, 214, 334, 374, 388
BsgI GTGCAG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 51
BspCNI CTCAG 2 cut(s) 271, 301
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 3 cut(s) 22, 165, 261
BssECI CCNNGG 1 cut(s) 110
BssT1I CCWWGG 1 cut(s) 110
BstAPI GCANNNNNTGC 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 279, 309
BstMAI GTCTC 1 cut(s) 51
BstMWI GCNNNNNNNGC 3 cut(s) 71, 208, 347
BstNSI RCATGY 3 cut(s) 218, 254, 394
BstV1I GCAGC 5 cut(s) 116, 214, 334, 374, 388
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 342
Csp6I GTAC 1 cut(s) 329
CviAII CATG 4 cut(s) 215, 251, 356, 391
CviJI RGCY 7 cut(s) 74, 107, 125, 313, 341, 362, 379
CviKI_1 RGCY 7 cut(s) 74, 107, 125, 313, 341, 362, 379
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 2 cut(s) 279, 309
Eco130I CCWWGG 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 4 cut(s) 218, 254, 359, 394
FaiI YATR 9 cut(s) 71, 177, 185, 216, 228, 252, 302, 357, 392
FatI CATG 4 cut(s) 214, 250, 355, 390
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 5 cut(s) 105, 203, 348, 377, 388
Fsp4HI GCNGC 5 cut(s) 105, 203, 348, 377, 388
FspBI CTAG 1 cut(s) 32
GluI GCNGC 5 cut(s) 105, 203, 348, 377, 388
GsuI CTGGAG 1 cut(s) 386
Hin1II CATG 4 cut(s) 218, 254, 359, 394
HinfI GANTC 3 cut(s) 167, 274, 283
Hpy166II GTNNAC 2 cut(s) 131, 329
Hpy188I TCNGA 2 cut(s) 79, 310
Hpy188III TCNNGA 2 cut(s) 278, 365
Hpy8I GTNNAC 2 cut(s) 131, 329
HpyAV CCTTC 1 cut(s) 110
HpyCH4V TGCA 5 cut(s) 158, 202, 218, 254, 390
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 208, 347
HpyF3I CTNAG 2 cut(s) 279, 309
Hsp92II CATG 4 cut(s) 218, 254, 359, 394
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 4 cut(s) 111, 291, 309, 350
Lsp1109I GCAGC 5 cut(s) 116, 214, 334, 374, 388
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 2 cut(s) 151, 246
MluCI AATT 1 cut(s) 291
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 4 cut(s) 47, 173, 289, 393
MseI TTAA 2 cut(s) 38, 315
MspA1I CMGCKG 1 cut(s) 125
MwoI GCNNNNNNNGC 3 cut(s) 71, 208, 347
NlaIII CATG 4 cut(s) 218, 254, 359, 394
NspI RCATGY 3 cut(s) 218, 254, 394
PfeI GAWTC 2 cut(s) 274, 283
PkrI GCNGC 5 cut(s) 106, 204, 349, 378, 389
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
SaqAI TTAA 2 cut(s) 38, 315
SatI GCNGC 5 cut(s) 105, 203, 348, 377, 388
SchI GAGTC 1 cut(s) 176
SetI ASST 9 cut(s) 47, 76, 109, 127, 315, 322, 328, 334, 381
SmlI CTYRAG 2 cut(s) 98, 164
SmoI CTYRAG 2 cut(s) 98, 164
Sse9I AATT 1 cut(s) 291
SspMI CTAG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 110
TaqI TCGA 2 cut(s) 266, 272
TasI AATT 1 cut(s) 291
TfiI GAWTC 2 cut(s) 274, 283
Tru1I TTAA 2 cut(s) 38, 315
Tru9I TTAA 2 cut(s) 38, 315
TscAI CASTG 1 cut(s) 349
TseI GCWGC 5 cut(s) 104, 202, 347, 376, 387
TspDTI ATGAA 1 cut(s) 344
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 1 cut(s) 349
XceI RCATGY 3 cut(s) 218, 254, 394
XmiI GTMKAC 1 cut(s) 130
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.