Rh4BG230700

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0006654
Physical Location & Seq
Forward (+)
39522741 .. 39523082
342 bp
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UTR
Exon/CDS
Intron
Rh4BG230700.1

Sequence Viewer

Length: 342 bp
ATGTATAAGGGCAACAAGGATGGTGACGCCAGGTTTCTATGCTTCAAAATCTTGTTTGATGTGATGGTAGTTTTTCTTAATGAACAATCTGAAGATGAGCAAGGGTCCAAAGAATTGCAATCCATATCCAATACAAACTTTCTTCCTCTCTACCCTTCCTTGATTGAAGACGAAGATCCAATCCCCTTGTACGCGCAAAAGCTGCTTGTGATGCTGATTGATTATAGTTACATCAAAATTGCAGACATTCTACATCTGAAGATAGTCTTGCAATGCTTTGAGTTTTTGCTGGGCGATCTCTCAAGTGCAAATGTAAACATGTTATGCTATGCTTGGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0001932 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0007349 GO:0007399 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009555 GO:0009556 GO:0009574 GO:0009653 GO:0009966 GO:0009987 GO:0010245 GO:0010342 GO:0010646 GO:0010975 GO:0015630 GO:0015631 GO:0016043 GO:0019220 GO:0019222 GO:0019953 GO:0022008 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0030054 GO:0030154 GO:0030334 GO:0031323 GO:0031344 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032506 GO:0032872 GO:0032879 GO:0034293 GO:0040012 GO:0042325 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043408 GO:0043934 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045595 GO:0045664 GO:0046328 GO:0048229 GO:0048236 GO:0048583 GO:0048646 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051270 GO:0051301 GO:0051321 GO:0051704 GO:0051960 GO:0055044 GO:0060255 GO:0060284 GO:0061640 GO:0065007 GO:0070302 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090036 GO:0120035 GO:1900744 GO:1902407 GO:1902410 GO:1902531 GO:1903046 GO:1903047 GO:2000026 GO:2000145 GO:2001222
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

113

Amino Acids

13.04

Weight (kDa)

4.35

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_ULK4 PF23606 1 - 80 9.9e-32 Serine/threonine-protein kinase ULK4-like, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 194
AclWI GGATC 1 cut(s) 170
AcuI CTGAAG 2 cut(s) 111, 278
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 2 cut(s) 46, 167
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
AlwI GGATC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 202
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 35
AvaII GGWCC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 189
BccI CCATC 2 cut(s) 14, 58
BciT130I CCWGG 1 cut(s) 31
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 286
BsaHI GRCGYC 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 25
BseMI GCAATG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 194
Bsp143I GATC 2 cut(s) 175, 295
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 278
BssMI GATC 2 cut(s) 175, 295
BssNI GRCGYC 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 31
BstACI GRCGYC 1 cut(s) 27
BstAPI GCANNNNNTGC 1 cut(s) 202
BstF5I GGATG 1 cut(s) 25
BstFNI CGCG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 2 cut(s) 178, 298
BstMBI GATC 2 cut(s) 175, 295
BstMWI GCNNNNNNNGC 2 cut(s) 202, 211
BstNI CCWGG 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 29
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BtsCI GGATG 1 cut(s) 25
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 105
CseI GACGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 190
CviAII CATG 1 cut(s) 319
CviJI RGCY 2 cut(s) 202, 337
CviKI_1 RGCY 2 cut(s) 202, 337
CviQI GTAC 1 cut(s) 190
DpnI GATC 2 cut(s) 177, 297
DpnII GATC 2 cut(s) 175, 295
Eco47I GGWCC 1 cut(s) 105
Eco57I CTGAAG 2 cut(s) 111, 278
EcoRII CCWGG 1 cut(s) 29
FaeI CATG 1 cut(s) 322
FaiI YATR 7 cut(s) 6, 40, 125, 225, 320, 325, 330
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FatI CATG 1 cut(s) 318
Fnu4HI GCNGC 1 cut(s) 203
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 203
GlaI GCGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 203
GsaI CCCAGC 1 cut(s) 293
HgaI GACGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 1 cut(s) 322
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 2 cut(s) 91, 258
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 165
HpyCH4V TGCA 4 cut(s) 118, 242, 271, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 211
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 1 cut(s) 322
HspAI GCGC 1 cut(s) 194
Kzo9I GATC 2 cut(s) 175, 295
LpnPI CCDG 3 cut(s) 16, 43, 275
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 23, 227
MalI GATC 2 cut(s) 177, 297
MboI GATC 2 cut(s) 175, 295
MboII GAAGA 5 cut(s) 104, 134, 179, 185, 271
MflI RGATCY 1 cut(s) 175
MluCI AATT 2 cut(s) 113, 237
MnlI CCTC 1 cut(s) 156
MseI TTAA 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 202, 211
NdeII GATC 2 cut(s) 175, 295
NlaIII CATG 1 cut(s) 322
NlaIV GGNNCC 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 23
NspI RCATGY 1 cut(s) 322
PciI ACATGT 1 cut(s) 318
PkrI GCNGC 1 cut(s) 204
PscI ACATGT 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 29
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 105
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 1 cut(s) 203
Sau3AI GATC 2 cut(s) 175, 295
Sau96I GGNCC 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 31
SetI ASST 2 cut(s) 35, 204
SfaNI GCATC 1 cut(s) 201
SinI GGWCC 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 2 cut(s) 113, 237
StyD4I CCNGG 1 cut(s) 29
TasI AATT 2 cut(s) 113, 237
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 96
VpaK11BI GGWCC 1 cut(s) 105
XceI RCATGY 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.