Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005104.1

Orthogroup ID

OG0006654

Physical Location & Seq

Genomic Coordinates Forward (+)

14568 .. 17269

Gene Structure 2702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005104.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

atgctcaaaaaccaaccttttgacccaaacccctcagtttcagccaccacaactcaaccatggacctccgactcagtctcccaagtcctaacctccatccccagattcttcttccagtcccctcgctccataggtcgccaaaccggcttccggcaccgcgctccgttaaagcaacgccatctcaggcgagaaacatatgaattccacaacgacgtgcgcccagcagctgcccgcagagacctcagcaaggtcaatctgggagtggacaaagccctcgatttttactactgggtcgaaacccatttcgggttcaaccacagtgagcgaacttgcagagacatggctgtcgttttggctaaagggaatcggttgaaggccctctgggattttctgaaagacatgtccaagagagggagtagtgaaagccctcctcttgtaacgacacagtccatcacctgtttgatgaaatgcctaggagaagagggattggtcaatgaagcattggcggctttctataggatgaagcagtttcattgcaaaccggatgtgtatgcttacaacactattatttacgcgctttgcagggttggggatttcaagaaggctcggtttttgctggagcagatggagctgccgggttttagatgcccgccggatacattcacttacacgattttgataagctcttattgtagatatgggttggagactgggtgcaggaaggccactaggaggaggttgtgggaagcaaaccacatgtttcggaatatgctctttagagggtttgttcctgatgttgttacttacaatgctttgatcaatggttgttgcaagacttataggatagagagggcgttggagttgtttggggatatgaagaagagggattgtacccccaaccgcgttacttatgattcgtttattagatactatgctgctgttaatgagattgacaaggctgtggatatgttaagaaggatgcagaatatgaatcatggattggccacttcaagttcgtatactccaatcattcatgccatgtgtgaagcaggaagggttacagaggcttggggttttcttgttgagttggttgatggagggtcaatacctagagaatatacttacaaattagtttgcaatgcaatgagttcagctggagaggtcagtttacttgatgatggcttgcgaaaaagaatagaagatggtctcacggagaagtgtgtggcagatatagcttcagaatgtgttgttttgttgctcaaggcagctccaagggaaggcacagctggtctactaactaatgtcccaaaagttactgcaatgtttgagtcttggcatagatacatatctcatttgttggtgcagcgagtgctacatgctcttggttatgcttgtaggcagtatttgttacatgcaatgatattggcattgtcgattcctgagattccaagaattgagggcatcgtttctgagcttaaaggttctggtgtacctactttagccactgctgcttttcatgtggctgtggagtttcagctgcttcctcgctgcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

518

Amino Acids

58.91

Weight (kDa)

9.07

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77405
fragaria_vesca	FvH4_2g27550
malus_domestica	MD00G1030400.v1.1
prunus_persica	Prupe.1G492400_v2.0.a1
pyrus_communis	pycom15g30800
rosa_chinensis	RchiOBHm_Chr4g0420811 RchiOBHm_Chr4g0420821
rosa_laevigata	RLG00000007736 RLG00000011697
rosa_multiflora	Rmu_co8321563.1_g000001 Rmu_sc0005104.1_g000002 Rmu_sc0006997.1_g000002 Rmu_sc0006997.1_g000003
rosa_roxburghii	Rroxscaffold_5G00363250
rosa_rugosa	Rorug04G0166200 Rorug04G0166300 Rorug06G0261900
rosa_samantha	Rh4AG227600 Rh4BG230600 Rh4BG230700 Rh4BG230800 Rh4CG242600 Rh4CG242700 Rh6BG381400
rosa_wichuraiana	Rw4G019690 Rw6G032550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	153
AccI	GTMKAC	2 cut(s)	1019, 1291
AccII	CGCG	3 cut(s)	159, 575, 903
AciI	CCGC	5 cut(s)	157, 232, 506, 650, 901
AcoI	YGGCCR	1 cut(s)	1002
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	1221
AfaI	GTAC	2 cut(s)	892, 1491
AfiI	CCNNNNNNNGG	6 cut(s)	150, 247, 306, 411, 732, 1277
AflIII	ACRYGT	2 cut(s)	399, 756
AgsI	TTSAA	4 cut(s)	313, 373, 598, 1011
AjiI	CACGTC	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	2 cut(s)	983, 1015
AluBI	AGCT	9 cut(s)	227, 631, 684, 1154, 1235, 1268, 1286, 1474, 1537
AluI	AGCT	9 cut(s)	227, 631, 684, 1154, 1235, 1268, 1286, 1474, 1537
Alw26I	GTCTC	5 cut(s)	82, 231, 330, 701, 1211
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	3 cut(s)	375, 723, 1002
ApeKI	GCWGC	9 cut(s)	224, 227, 631, 935, 1265, 1363, 1508, 1537, 1548
ApoI	RAATTY	1 cut(s)	200
AspA2I	CCTAGG	1 cut(s)	472
AspLEI	GCGC	3 cut(s)	161, 219, 577
AspS9I	GGNCC	2 cut(s)	63, 376
AsuC2I	CCSGG	1 cut(s)	636
AsuHPI	GGTGA	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	63
AvrII	CCTAGG	1 cut(s)	472
BalI	TGGCCA	1 cut(s)	1004
BanI	GGYRCC	1 cut(s)	153
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	9 cut(s)	214, 236, 618, 922, 1277, 1375, 1495, 1524, 1535
BccI	CCATC	7 cut(s)	104, 186, 458, 619, 1088, 1172, 1196
BciVI	GTATCC	1 cut(s)	649
BclI	TGATCA	1 cut(s)	816
BcnI	CCSGG	1 cut(s)	636
BcoDI	GTCTC	5 cut(s)	82, 231, 330, 701, 1211
BfaI	CTAG	3 cut(s)	473, 729, 1110
BfmI	CTRYAG	1 cut(s)	514
BfuI	GTATCC	1 cut(s)	649
BglI	GCCNNNNNGGC	1 cut(s)	144
BlnI	CCTAGG	1 cut(s)	472
Bme1390I	CCNGG	1 cut(s)	636
Bme18I	GGWCC	1 cut(s)	63
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	63, 376
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	636
BmrI	ACTGGG	2 cut(s)	298, 720
BmsI	GCATC	3 cut(s)	635, 969, 1470
BmuI	ACTGGG	2 cut(s)	298, 720
BpmI	CTGGAG	2 cut(s)	638, 1176
Bpu10I	CCTNAGC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	1244
BpuMI	CCSGG	1 cut(s)	636
BsaBI	GATNNNNATC	1 cut(s)	1345
BsaI	GGTCTC	2 cut(s)	231, 1211
BsaJI	CCNNGG	3 cut(s)	59, 472, 1271
BsaWI	WCCGGW	1 cut(s)	541
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 698, 728
Bsc4I	CCNNNNNNNGG	6 cut(s)	150, 247, 306, 411, 732, 1277
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	3 cut(s)	115, 293, 715
Bse3DI	GCAATG	5 cut(s)	532, 1144, 1149, 1326, 1422
Bse8I	GATNNNNATC	1 cut(s)	1345
BseDI	CCNNGG	3 cut(s)	59, 472, 1271
BseGI	GGATG	4 cut(s)	96, 525, 550, 984
BseJI	GATNNNNATC	1 cut(s)	1345
BseLI	CCNNNNNNNGG	6 cut(s)	150, 247, 306, 411, 732, 1277
BseMI	GCAATG	5 cut(s)	532, 1144, 1149, 1326, 1422
BseMII	CTCAG	6 cut(s)	48, 87, 196, 256, 1431, 1461
BseNI	ACTGG	3 cut(s)	115, 293, 715
BseRI	GAGGAG	2 cut(s)	420, 748
BseXI	GCAGC	9 cut(s)	214, 236, 618, 922, 1277, 1375, 1495, 1524, 1535
BseYI	CCCAGC	1 cut(s)	220
BsgI	GTGCAG	2 cut(s)	736, 1382
Bsh1236I	CGCG	3 cut(s)	159, 575, 903
BshFI	GGCC	3 cut(s)	377, 725, 1004
BshNI	GGYRCC	1 cut(s)	153
BsiSI	CCGG	5 cut(s)	144, 151, 542, 635, 653
BslFI	GGGAC	2 cut(s)	103, 1289
BslI	CCNNNNNNNGG	6 cut(s)	150, 247, 306, 411, 732, 1277
BsmAI	GTCTC	5 cut(s)	82, 231, 330, 701, 1211
BsmFI	GGGAC	2 cut(s)	103, 1289
BsnI	GGCC	3 cut(s)	377, 725, 1004
Bso31I	GGTCTC	2 cut(s)	231, 1211
Bsp143I	GATC	1 cut(s)	816
Bsp19I	CCATGG	1 cut(s)	59
BspACI	CCGC	5 cut(s)	157, 232, 506, 650, 901
BspANI	GGCC	3 cut(s)	377, 725, 1004
BspCNI	CTCAG	6 cut(s)	47, 86, 195, 255, 1432, 1462
BspFNI	CGCG	3 cut(s)	159, 575, 903
BspLI	GGNNCC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	153
BspTNI	GGTCTC	2 cut(s)	231, 1211
BsrDI	GCAATG	5 cut(s)	532, 1144, 1149, 1326, 1422
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	3 cut(s)	115, 293, 715
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	59, 472, 1271
BssMI	GATC	1 cut(s)	816
BssNAI	GTATAC	1 cut(s)	1020
BssT1I	CCWWGG	3 cut(s)	59, 472, 1271
Bst1107I	GTATAC	1 cut(s)	1020
Bst4CI	ACNGT	2 cut(s)	320, 447
Bst6I	CTCTTC	2 cut(s)	474, 875
BstAPI	GCANNNNNTGC	1 cut(s)	1369
BstC8I	GCNNGC	3 cut(s)	232, 650, 1184
BstDEI	CTNAG	6 cut(s)	34, 73, 182, 242, 1440, 1470
BstDSI	CCRYGG	1 cut(s)	59
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	4 cut(s)	96, 525, 550, 984
BstFNI	CGCG	3 cut(s)	159, 575, 903
BstHHI	GCGC	3 cut(s)	161, 219, 577
BstKTI	GATC	1 cut(s)	819
BstMAI	GTCTC	5 cut(s)	82, 231, 330, 701, 1211
BstMBI	GATC	1 cut(s)	816
BstMWI	GCNNNNNNNGC	6 cut(s)	144, 506, 628, 1232, 1369, 1508
BstNSI	RCATGY	5 cut(s)	403, 760, 1379, 1415, 1555
BstSCI	CCNGG	1 cut(s)	634
BstSFI	CTRYAG	1 cut(s)	514
BstUI	CGCG	3 cut(s)	159, 575, 903
BstV1I	GCAGC	9 cut(s)	214, 236, 618, 922, 1277, 1375, 1495, 1524, 1535
BstZ17I	GTATAC	1 cut(s)	1020
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	3 cut(s)	377, 725, 1004
BtgI	CCRYGG	1 cut(s)	59
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	4 cut(s)	96, 525, 550, 984
BtsI	GCAGTG	1 cut(s)	1503
BtsIMutI	CAGTG	2 cut(s)	325, 1503
Cac8I	GCNNGC	3 cut(s)	232, 650, 1184
CaiI	CAGNNNCTG	1 cut(s)	227
CfoI	GCGC	3 cut(s)	161, 219, 577
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	2 cut(s)	63, 376
Csp6I	GTAC	2 cut(s)	891, 1490
CviQI	GTAC	2 cut(s)	891, 1490
DdeI	CTNAG	6 cut(s)	34, 73, 182, 242, 1440, 1470
DpnI	GATC	1 cut(s)	818
DpnII	GATC	1 cut(s)	816
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	1 cut(s)	1002
Eam1104I	CTCTTC	2 cut(s)	474, 875
EarI	CTCTTC	2 cut(s)	474, 875
Eco130I	CCWWGG	3 cut(s)	59, 472, 1271
Eco31I	GGTCTC	2 cut(s)	231, 1211
Eco47I	GGWCC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	1221
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRI	GAATTC	1 cut(s)	200
EcoT14I	CCWWGG	3 cut(s)	59, 472, 1271
ErhI	CCWWGG	3 cut(s)	59, 472, 1271
FaqI	GGGAC	2 cut(s)	103, 1289
FauI	CCCGC	2 cut(s)	239, 657
FauNDI	CATATG	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	816
FblI	GTMKAC	2 cut(s)	1019, 1291
FokI	GGATG	4 cut(s)	83, 532, 557, 991
FspBI	CTAG	3 cut(s)	473, 729, 1110
GlaI	GCGC	3 cut(s)	160, 218, 576
GsaI	CCCAGC	1 cut(s)	224
GsuI	CTGGAG	2 cut(s)	638, 1176
HaeIII	GGCC	3 cut(s)	377, 725, 1004
HapII	CCGG	5 cut(s)	144, 151, 542, 635, 653
HhaI	GCGC	3 cut(s)	161, 219, 577
Hin6I	GCGC	3 cut(s)	159, 217, 575
HinP1I	GCGC	3 cut(s)	159, 217, 575
HinfI	GANTC	8 cut(s)	71, 105, 364, 914, 991, 1328, 1435, 1444
HpaII	CCGG	5 cut(s)	144, 151, 542, 635, 653
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	5 cut(s)	265, 1020, 1169, 1292, 1490
Hpy188I	TCNGA	5 cut(s)	70, 393, 765, 1240, 1471
Hpy188III	TCNNGA	3 cut(s)	598, 791, 1439
Hpy8I	GTNNAC	5 cut(s)	265, 1020, 1169, 1292, 1490
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	6 cut(s)	367, 595, 715, 969, 1047, 1271
HpyCH4III	ACNGT	2 cut(s)	320, 447
HpyCH4IV	ACGT	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	6 cut(s)	144, 506, 628, 1232, 1369, 1508
HpyF3I	CTNAG	6 cut(s)	34, 73, 182, 242, 1440, 1470
HpySE526I	ACGT	1 cut(s)	213
HspAI	GCGC	3 cut(s)	159, 217, 575
Ksp22I	TGATCA	1 cut(s)	816
Kzo9I	GATC	1 cut(s)	816
LmnI	GCTCC	5 cut(s)	131, 166, 619, 628, 1273
Lsp1109I	GCAGC	9 cut(s)	214, 236, 618, 922, 1277, 1375, 1495, 1524, 1535
LweI	GCATC	3 cut(s)	635, 969, 1470
MaeI	CTAG	3 cut(s)	473, 729, 1110
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	6 cut(s)	436, 799, 904, 1057, 1312, 1407
MalI	GATC	1 cut(s)	818
MboI	GATC	1 cut(s)	816
MboII	GAAGA	6 cut(s)	100, 103, 491, 889, 892, 1211
MlsI	TGGCCA	1 cut(s)	1004
MluCI	AATT	3 cut(s)	200, 1127, 1452
MluNI	TGGCCA	1 cut(s)	1004
MlyI	GAGTC	2 cut(s)	65, 1337
MmeI	TCCRAC	3 cut(s)	93, 684, 837
Mox20I	TGGCCA	1 cut(s)	1004
MscI	TGGCCA	1 cut(s)	1004
MseI	TTAA	4 cut(s)	167, 942, 971, 1476
Msp20I	TGGCCA	1 cut(s)	1004
MspA1I	CMGCKG	4 cut(s)	227, 1154, 1286, 1537
MspI	CCGG	5 cut(s)	144, 151, 542, 635, 653
MspR9I	CCNGG	1 cut(s)	636
MvnI	CGCG	3 cut(s)	159, 575, 903
MwoI	GCNNNNNNNGC	6 cut(s)	144, 506, 628, 1232, 1369, 1508
NciI	CCSGG	1 cut(s)	636
NcoI	CCATGG	1 cut(s)	59
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	1 cut(s)	816
NlaIV	GGNNCC	1 cut(s)	155
NspI	RCATGY	5 cut(s)	403, 760, 1379, 1415, 1555
PciI	ACATGT	2 cut(s)	399, 756
PfeI	GAWTC	6 cut(s)	105, 364, 914, 991, 1435, 1444
PflFI	GACNNNGTC	2 cut(s)	74, 445
PleI	GAGTC	2 cut(s)	65, 1336
PpsI	GAGTC	2 cut(s)	65, 1336
PscI	ACATGT	2 cut(s)	399, 756
PspFI	CCCAGC	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	2 cut(s)	63, 376
PstNI	CAGNNNCTG	1 cut(s)	227
PsyI	GACNNNGTC	2 cut(s)	74, 445
PvuII	CAGCTG	4 cut(s)	227, 1154, 1286, 1537
RsaI	GTAC	2 cut(s)	892, 1491
RsaNI	GTAC	2 cut(s)	891, 1490
SaqAI	TTAA	4 cut(s)	167, 942, 971, 1476
Sau3AI	GATC	1 cut(s)	816
Sau96I	GGNCC	2 cut(s)	63, 376
SchI	GAGTC	2 cut(s)	65, 1337
ScrFI	CCNGG	1 cut(s)	636
SfaNI	GCATC	3 cut(s)	635, 969, 1470
SfcI	CTRYAG	1 cut(s)	514
SinI	GGWCC	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	1259
SmoI	CTYRAG	1 cut(s)	1259
Sse9I	AATT	3 cut(s)	200, 1127, 1452
SsiI	CCGC	5 cut(s)	157, 232, 506, 650, 901
SspMI	CTAG	3 cut(s)	473, 729, 1110
StyD4I	CCNGG	1 cut(s)	634
StyI	CCWWGG	3 cut(s)	59, 472, 1271
TaaI	ACNGT	2 cut(s)	320, 447
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	3 cut(s)	276, 294, 1433
TasI	AATT	3 cut(s)	200, 1127, 1452
TauI	GCSGC	1 cut(s)	509
TfiI	GAWTC	6 cut(s)	105, 364, 914, 991, 1435, 1444
Tru1I	TTAA	4 cut(s)	167, 942, 971, 1476
Tru9I	TTAA	4 cut(s)	167, 942, 971, 1476
TscAI	CASTG	2 cut(s)	325, 1510
TseI	GCWGC	9 cut(s)	224, 227, 631, 935, 1265, 1363, 1508, 1537, 1548
TspDTI	ATGAA	9 cut(s)	213, 479, 510, 521, 536, 890, 1004, 1022, 1505
TspGWI	ACGGA	2 cut(s)	153, 1226
TspRI	CASTG	2 cut(s)	325, 1510
Tth111I	GACNNNGTC	2 cut(s)	74, 445
VpaK11BI	GGWCC	1 cut(s)	63
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	5 cut(s)	403, 760, 1379, 1415, 1555
XmaJI	CCTAGG	1 cut(s)	472
XmiI	GTMKAC	2 cut(s)	1019, 1291
XspI	CTAG	3 cut(s)	473, 729, 1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.