Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006654

Physical Location & Seq

Genomic Coordinates Reverse (-)

40802914 .. 40805817

Gene Structure 2904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0261900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGCTTCAGCTTCGACCTTTCTCTCACACCCAAACCCTTACACAAACGACGCCGTATTCTCTTCTTCACGAAGTCGGTTCCAATCCTTCAGCTCTCGATCAAACTTCTATGGCTCCAAATTCACATCCAAACCGATTTCCTTGTCCACCTCCGGAACCCGACCCGTCCGGCCCAAACCCGCTAGTTCTTCGGCCTCAGAACCGCACCAAACGTTCGATGTTTTGATTATCGGAGCTGGAATAATCGGGTTGACCATAGCCCGGCAGTTCCTGATCGGGTCGGACCTATCCGTTGCCGTGATTGACAAGGCTGTCCCCTGCTCTGGTGCCACCGGCGCCGGGCAAGGGTATATATGGATGGCACACAAAACACCAAGCAGCGACCTTTGGGAGCTGGGACTCAGAAGCCAGAGACTTTGGGAGGAATTGGCTGAGAGCCTAATTGAGCAGGGGTTGGACCCTCTAGAACATTTGGGGTGGAAGAAAACAGGGAGCTTGCTAGTTGGTAGAACTCCTGAGGAGTTGGAGGTGTTAAAAAAGATGGTGAAGCAGCAATGTGAAGCTGGGGTAAGATCAGAGTACTTGTCGGCTACTGACTTGCGTATTAAGGAACCTGAATTGAAGGTTGATAAAGATACTGGGGCTGCTTTTCTGCCTGATGATTCCCAACTGGATGCTCATCGTGCCGTGGAGTTTCTTGAAAAGGGAAATAGGCTTTATTCATCAGAGGGTAGATATGCGGAGTTTTATAACGATCCAGTGATGAGTTTACTGAGATCTGGTGGCAGTGGGGAGGTTGAGGCTATTAAGACTTCCAGGACTATCTTACACTGTAGAAAGGCCATTGTGGTGGCAGCTGGTTGTTGGAGTGGATCATTGATGCAGGACCTGATTAGAGAATCAGAAATTGTACTGGACGTCCCTGTGAAACCACGAAAGGGTCACCTTCTAGTGCTTGAGAATTTTAATTCCTTTCAACTCAATCATGGTCTGATGGAGGTGGGATATGTTGATCATCAAACTACAGTTCAGCTTCCTAACATGTTGGCTCCTAGCTTGCTTGATCAGAGCTTGTCTGTTTCAATGACAGCCACTATGGATACAGTAGGGAACATTGTTCTCGGGAGCAGCCGACAATTTGCTGGGTTCGGCACTGAAGTGGAAGAAACCATCATCAGTCGTATATGGGACCGAGCTGGAGAATTCTTTCCAAAATTAAGAGAGAAGCCCCTTTCAGATATCAGTAAGAGCAGAGAAGTGAGAGTAGGATTACGACCTTACATGCCTGATGGGAAGCCAGTGATTGGGCCTGTGCCAGGTTTGCCAAACTTGTTCCTTGCCACTGGGCATGAAGGGAATGGACTTTCTATGTCTCTAGGAACTGCTGAAATGCTTGCACATATGGTGCTAGGCAATGCTGAGAAGATTAGTTCTGCACCTTTTGCTGCTCATGGTCGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

487

Amino Acids

53.01

Weight (kDa)

6.34

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	73 - 468	3.8e-60	FAD dependent oxidoreductase
FAD_binding_2	PF00890	73 - 131	5.3e-06	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77405
fragaria_vesca	FvH4_2g27550
malus_domestica	MD00G1030400.v1.1
prunus_persica	Prupe.1G492400_v2.0.a1
pyrus_communis	pycom15g30800
rosa_chinensis	RchiOBHm_Chr4g0420811 RchiOBHm_Chr4g0420821
rosa_laevigata	RLG00000007736 RLG00000011697
rosa_multiflora	Rmu_co8321563.1_g000001 Rmu_sc0005104.1_g000002 Rmu_sc0006997.1_g000002 Rmu_sc0006997.1_g000003
rosa_roxburghii	Rroxscaffold_5G00363250
rosa_rugosa	Rorug04G0166200 Rorug04G0166300 Rorug06G0261900
rosa_samantha	Rh4AG227600 Rh4BG230600 Rh4BG230700 Rh4BG230800 Rh4CG242600 Rh4CG242700 Rh6BG381400
rosa_wichuraiana	Rw4G019690 Rw6G032550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AasI	GACNNNNNNGTC	1 cut(s)	311
AatII	GACGTC	1 cut(s)	921
AccB1I	GGYRCC	2 cut(s)	326, 335
AccB7I	CCANNNNNTGG	1 cut(s)	1304
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	3 cut(s)	180, 203, 740
AclI	AACGTT	1 cut(s)	212
AclWI	GGATC	2 cut(s)	749, 880
AcsI	RAATTY	3 cut(s)	119, 961, 1202
AcuI	CTGAAG	2 cut(s)	73, 1176
AcyI	GRCGYC	3 cut(s)	51, 336, 918
AfaI	GTAC	2 cut(s)	581, 912
AfiI	CCNNNNNNNGG	7 cut(s)	261, 323, 339, 345, 938, 1304, 1316
AflIII	ACRYGT	1 cut(s)	1041
AgsI	TTSAA	4 cut(s)	622, 701, 977, 1083
AjnI	CCWGG	2 cut(s)	815, 1315
AleI	CACNNNNGTG	1 cut(s)	1157
Alw26I	GTCTC	2 cut(s)	406, 1377
AlwI	GGATC	2 cut(s)	749, 880
AlwNI	CAGNNNCTG	2 cut(s)	271, 889
Ama87I	CYCGRG	1 cut(s)	1121
Aor13HI	TCCGGA	1 cut(s)	152
AoxI	GGCC	4 cut(s)	170, 192, 840, 1307
ApeKI	GCWGC	6 cut(s)	378, 550, 644, 854, 1128, 1445
ApoI	RAATTY	3 cut(s)	119, 961, 1202
Asp700I	GAANNNNTTC	1 cut(s)	1206
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	6 cut(s)	171, 283, 457, 886, 1189, 1307
AsuC2I	CCSGG	2 cut(s)	262, 340
AsuHPI	GGTGA	2 cut(s)	556, 935
AvaI	CYCGRG	1 cut(s)	1121
AvaII	GGWCC	4 cut(s)	283, 457, 886, 1189
AxyI	CCTNAGG	1 cut(s)	516
BanI	GGYRCC	2 cut(s)	326, 335
BbvI	GCAGC	6 cut(s)	390, 562, 631, 866, 1140, 1432
BccI	CCATC	5 cut(s)	352, 535, 988, 1178, 1283
BceAI	ACGGC	3 cut(s)	38, 281, 671
BciT130I	CCWGG	2 cut(s)	817, 1317
BciVI	GTATCC	1 cut(s)	1093
BclI	TGATCA	2 cut(s)	1012, 1063
BcnI	CCSGG	2 cut(s)	262, 340
BcoDI	GTCTC	2 cut(s)	406, 1377
BfaI	CTAG	7 cut(s)	183, 464, 500, 950, 1053, 1376, 1409
BfmI	CTRYAG	2 cut(s)	832, 1023
BfoI	RGCGCY	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	1093
BglII	AGATCT	1 cut(s)	776
BisI	GCNGC	6 cut(s)	379, 551, 645, 855, 1129, 1446
BlsI	GCNGC	6 cut(s)	380, 552, 646, 856, 1130, 1447
BmcAI	AGTACT	1 cut(s)	581
Bme1390I	CCNGG	4 cut(s)	262, 340, 817, 1317
Bme18I	GGWCC	4 cut(s)	283, 457, 886, 1189
BmeT110I	CYCGRG	1 cut(s)	1121
BmgT120I	GGNCC	6 cut(s)	171, 283, 457, 886, 1189, 1307
BmiI	GGNNCC	9 cut(s)	80, 115, 157, 328, 337, 459, 612, 1050, 1190
BmrFI	CCNGG	4 cut(s)	262, 340, 817, 1317
BmrI	ACTGGG	2 cut(s)	648, 1353
BmsI	GCATC	2 cut(s)	664, 870
BmuI	ACTGGG	2 cut(s)	648, 1353
BpmI	CTGGAG	1 cut(s)	1218
BpuEI	CTTGAG	1 cut(s)	977
BpuMI	CCSGG	2 cut(s)	262, 340
BsaBI	GATNNNNATC	1 cut(s)	678
BsaHI	GRCGYC	3 cut(s)	51, 336, 918
BsaJI	CCNNGG	1 cut(s)	687
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	7 cut(s)	261, 323, 339, 345, 938, 1304, 1316
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	6 cut(s)	643, 675, 758, 918, 1298, 1348
Bse21I	CCTNAGG	1 cut(s)	516
Bse3DI	GCAATG	2 cut(s)	560, 1420
Bse8I	GATNNNNATC	1 cut(s)	678
BseAI	TCCGGA	1 cut(s)	152
BseBI	CCWGG	2 cut(s)	817, 1317
BseDI	CCNNGG	1 cut(s)	687
BseGI	GGATG	3 cut(s)	125, 363, 679
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	7 cut(s)	261, 323, 339, 345, 938, 1304, 1316
BseMI	GCAATG	2 cut(s)	560, 1420
BseMII	CTCAG	6 cut(s)	210, 415, 423, 507, 764, 1410
BseNI	ACTGG	6 cut(s)	643, 675, 758, 918, 1298, 1348
BseRI	GAGGAG	1 cut(s)	533
BseXI	GCAGC	6 cut(s)	390, 562, 631, 866, 1140, 1432
BseYI	CCCAGC	3 cut(s)	394, 563, 1142
BsgI	GTGCAG	1 cut(s)	1419
BshFI	GGCC	4 cut(s)	172, 194, 842, 1309
BshNI	GGYRCC	2 cut(s)	326, 335
BsiHKCI	CYCGRG	1 cut(s)	1121
BsiSI	CCGG	5 cut(s)	153, 169, 262, 333, 339
BslFI	GGGAC	4 cut(s)	299, 411, 905, 1202
BslI	CCNNNNNNNGG	7 cut(s)	261, 323, 339, 345, 938, 1304, 1316
BsmAI	GTCTC	2 cut(s)	406, 1377
BsmFI	GGGAC	4 cut(s)	299, 411, 905, 1202
BsnI	GGCC	4 cut(s)	172, 194, 842, 1309
BsoBI	CYCGRG	1 cut(s)	1121
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	8 cut(s)	98, 273, 572, 754, 776, 872, 1012, 1063
BspACI	CCGC	3 cut(s)	180, 203, 740
BspANI	GGCC	4 cut(s)	172, 194, 842, 1309
BspCNI	CTCAG	6 cut(s)	209, 414, 424, 508, 765, 1411
BspEI	TCCGGA	1 cut(s)	152
BspLI	GGNNCC	9 cut(s)	80, 115, 157, 328, 337, 459, 612, 1050, 1190
BspPI	GGATC	2 cut(s)	749, 880
BspT107I	GGYRCC	2 cut(s)	326, 335
BsrDI	GCAATG	2 cut(s)	560, 1420
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	6 cut(s)	643, 675, 758, 918, 1298, 1348
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	687
BssMI	GATC	8 cut(s)	98, 273, 572, 754, 776, 872, 1012, 1063
BssNI	GRCGYC	3 cut(s)	51, 336, 918
Bst2UI	CCWGG	2 cut(s)	817, 1317
Bst4CI	ACNGT	3 cut(s)	833, 1027, 1105
Bst6I	CTCTTC	1 cut(s)	67
BstACI	GRCGYC	3 cut(s)	51, 336, 918
BstAPI	GCANNNNNTGC	1 cut(s)	1442
BstC8I	GCNNGC	3 cut(s)	497, 1058, 1395
BstDEI	CTNAG	6 cut(s)	196, 401, 432, 516, 773, 1419
BstDSI	CCRYGG	1 cut(s)	687
BstEII	GGTNACC	1 cut(s)	941
BstENI	CCTNNNNNAGG	1 cut(s)	1314
BstF5I	GGATG	3 cut(s)	125, 363, 679
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	8 cut(s)	101, 276, 575, 757, 779, 875, 1015, 1066
BstMAI	GTCTC	2 cut(s)	406, 1377
BstMBI	GATC	8 cut(s)	98, 273, 572, 754, 776, 872, 1012, 1063
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 683, 1321, 1442
BstNI	CCWGG	2 cut(s)	817, 1317
BstNSI	RCATGY	2 cut(s)	1045, 1285
BstPI	GGTNACC	1 cut(s)	941
BstSCI	CCNGG	4 cut(s)	260, 338, 815, 1315
BstSFI	CTRYAG	2 cut(s)	832, 1023
BstV1I	GCAGC	6 cut(s)	390, 562, 631, 866, 1140, 1432
BstX2I	RGATCY	1 cut(s)	776
BstXI	CCANNNNNNTGG	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	776
Bsu36I	CCTNAGG	1 cut(s)	516
BsuI	GTATCC	1 cut(s)	1093
BsuRI	GGCC	4 cut(s)	172, 194, 842, 1309
BtgI	CCRYGG	1 cut(s)	687
BtsCI	GGATG	3 cut(s)	125, 363, 679
BtsI	GCAGTG	1 cut(s)	793
BtsIMutI	CAGTG	6 cut(s)	765, 793, 829, 1152, 1305, 1341
Cac8I	GCNNGC	3 cut(s)	497, 1058, 1395
CaiI	CAGNNNCTG	2 cut(s)	271, 889
CfoI	GCGC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	6 cut(s)	171, 283, 457, 886, 1189, 1307
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	580, 911
CviAII	CATG	5 cut(s)	986, 1042, 1282, 1349, 1451
CviQI	GTAC	2 cut(s)	580, 911
DdeI	CTNAG	6 cut(s)	196, 401, 432, 516, 773, 1419
DinI	GGCGCC	1 cut(s)	337
DpnI	GATC	8 cut(s)	100, 275, 574, 756, 778, 874, 1014, 1065
DpnII	GATC	8 cut(s)	98, 273, 572, 754, 776, 872, 1012, 1063
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	1240
Eco47I	GGWCC	4 cut(s)	283, 457, 886, 1189
Eco57I	CTGAAG	2 cut(s)	73, 1176
Eco81I	CCTNAGG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	1121
Eco91I	GGTNACC	1 cut(s)	941
EcoNI	CCTNNNNNAGG	1 cut(s)	1314
EcoO109I	RGGNCCY	1 cut(s)	886
EcoO65I	GGTNACC	1 cut(s)	941
EcoRI	GAATTC	1 cut(s)	1202
EcoRII	CCWGG	2 cut(s)	815, 1315
EcoRV	GATATC	1 cut(s)	1240
EgeI	GGCGCC	1 cut(s)	337
EheI	GGCGCC	1 cut(s)	337
FaeI	CATG	5 cut(s)	989, 1045, 1285, 1352, 1454
FaqI	GGGAC	4 cut(s)	299, 411, 905, 1202
FatI	CATG	5 cut(s)	985, 1041, 1281, 1348, 1450
FauI	CCCGC	1 cut(s)	187
FauNDI	CATATG	1 cut(s)	1401
FbaI	TGATCA	2 cut(s)	1012, 1063
Fnu4HI	GCNGC	6 cut(s)	379, 551, 645, 855, 1129, 1446
FokI	GGATG	3 cut(s)	112, 370, 686
Fsp4HI	GCNGC	6 cut(s)	379, 551, 645, 855, 1129, 1446
FspBI	CTAG	7 cut(s)	183, 464, 500, 950, 1053, 1376, 1409
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	6 cut(s)	379, 551, 645, 855, 1129, 1446
GsaI	CCCAGC	3 cut(s)	398, 567, 1146
GsuI	CTGGAG	1 cut(s)	1218
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	4 cut(s)	172, 194, 842, 1309
HapII	CCGG	5 cut(s)	153, 169, 262, 333, 339
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	338
Hin1I	GRCGYC	3 cut(s)	51, 336, 918
Hin1II	CATG	5 cut(s)	989, 1045, 1285, 1352, 1454
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	3 cut(s)	399, 662, 899
HpaII	CCGG	5 cut(s)	153, 169, 262, 333, 339
HphI	GGTGA	2 cut(s)	556, 935
Hpy166II	GTNNAC	3 cut(s)	147, 252, 770
Hpy188III	TCNNGA	8 cut(s)	69, 96, 153, 271, 464, 515, 698, 1123
Hpy8I	GTNNAC	3 cut(s)	147, 252, 770
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	4 cut(s)	97, 616, 956, 1346
HpyCH4III	ACNGT	3 cut(s)	833, 1027, 1105
HpyCH4IV	ACGT	2 cut(s)	212, 918
HpyCH4V	TGCA	3 cut(s)	883, 1397, 1436
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 683, 1321, 1442
HpyF3I	CTNAG	6 cut(s)	196, 401, 432, 516, 773, 1419
HpySE526I	ACGT	2 cut(s)	212, 918
Hsp92I	GRCGYC	3 cut(s)	51, 336, 918
Hsp92II	CATG	5 cut(s)	989, 1045, 1285, 1352, 1454
HspAI	GCGC	1 cut(s)	336
KasI	GGCGCC	1 cut(s)	335
Kpn2I	TCCGGA	1 cut(s)	152
Ksp22I	TGATCA	2 cut(s)	1012, 1063
Kzo9I	GATC	8 cut(s)	98, 273, 572, 754, 776, 872, 1012, 1063
LmnI	GCTCC	6 cut(s)	119, 233, 391, 492, 1054, 1125
Lsp1109I	GCAGC	6 cut(s)	390, 562, 631, 866, 1140, 1432
LweI	GCATC	2 cut(s)	664, 870
MaeI	CTAG	7 cut(s)	183, 464, 500, 950, 1053, 1376, 1409
MaeII	ACGT	2 cut(s)	212, 918
MaeIII	GTNAC	1 cut(s)	941
MalI	GATC	8 cut(s)	100, 275, 574, 756, 778, 874, 1014, 1065
MboI	GATC	8 cut(s)	98, 273, 572, 754, 776, 872, 1012, 1063
MboII	GAAGA	6 cut(s)	54, 57, 180, 493, 1175, 1435
MflI	RGATCY	1 cut(s)	776
Mly113I	GGCGCC	1 cut(s)	336
MlyI	GAGTC	1 cut(s)	393
MmeI	TCCRAC	4 cut(s)	261, 435, 504, 845
MroI	TCCGGA	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	1206
MseI	TTAA	5 cut(s)	533, 606, 807, 966, 1217
MslI	CAYNNNNRTG	2 cut(s)	848, 1157
MspA1I	CMGCKG	1 cut(s)	857
MspI	CCGG	5 cut(s)	153, 169, 262, 333, 339
MspR9I	CCNGG	4 cut(s)	262, 340, 817, 1317
MvaI	CCWGG	2 cut(s)	817, 1317
MwoI	GCNNNNNNNGC	4 cut(s)	335, 683, 1321, 1442
NarI	GGCGCC	1 cut(s)	336
NciI	CCSGG	2 cut(s)	262, 340
NdeI	CATATG	1 cut(s)	1401
NdeII	GATC	8 cut(s)	98, 273, 572, 754, 776, 872, 1012, 1063
NlaIII	CATG	5 cut(s)	989, 1045, 1285, 1352, 1454
NlaIV	GGNNCC	9 cut(s)	80, 115, 157, 328, 337, 459, 612, 1050, 1190
NmuCI	GTSAC	1 cut(s)	941
NspI	RCATGY	2 cut(s)	1045, 1285
OliI	CACNNNNGTG	1 cut(s)	1157
PciI	ACATGT	1 cut(s)	1041
PdmI	GAANNNNTTC	1 cut(s)	1206
PfeI	GAWTC	2 cut(s)	662, 899
PflMI	CCANNNNNTGG	1 cut(s)	1304
PfoI	TCCNGGA	1 cut(s)	815
PkrI	GCNGC	6 cut(s)	380, 552, 646, 856, 1130, 1447
PleI	GAGTC	1 cut(s)	393
PluTI	GGCGCC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	393
PpuMI	RGGWCCY	1 cut(s)	886
PscI	ACATGT	1 cut(s)	1041
PsiI	TTATAA	1 cut(s)	750
Psp1406I	AACGTT	1 cut(s)	212
Psp5II	RGGWCCY	1 cut(s)	886
Psp6I	CCWGG	2 cut(s)	815, 1315
PspEI	GGTNACC	1 cut(s)	941
PspFI	CCCAGC	3 cut(s)	394, 563, 1142
PspGI	CCWGG	2 cut(s)	815, 1315
PspN4I	GGNNCC	9 cut(s)	80, 115, 157, 328, 337, 459, 612, 1050, 1190
PspPI	GGNCC	6 cut(s)	171, 283, 457, 886, 1189, 1307
PspPPI	RGGWCCY	1 cut(s)	886
PstNI	CAGNNNCTG	2 cut(s)	271, 889
PsuI	RGATCY	1 cut(s)	776
PvuII	CAGCTG	1 cut(s)	857
RsaI	GTAC	2 cut(s)	581, 912
RsaNI	GTAC	2 cut(s)	580, 911
RseI	CAYNNNNRTG	2 cut(s)	848, 1157
SaqAI	TTAA	5 cut(s)	533, 606, 807, 966, 1217
SatI	GCNGC	6 cut(s)	379, 551, 645, 855, 1129, 1446
Sau3AI	GATC	8 cut(s)	98, 273, 572, 754, 776, 872, 1012, 1063
Sau96I	GGNCC	6 cut(s)	171, 283, 457, 886, 1189, 1307
ScaI	AGTACT	1 cut(s)	581
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	4 cut(s)	262, 340, 817, 1317
SfaNI	GCATC	2 cut(s)	664, 870
SfcI	CTRYAG	2 cut(s)	832, 1023
SfoI	GGCGCC	1 cut(s)	337
SgrAI	CRCCGGYG	1 cut(s)	332
SinI	GGWCC	4 cut(s)	283, 457, 886, 1189
SmiMI	CAYNNNNRTG	2 cut(s)	848, 1157
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
SsiI	CCGC	3 cut(s)	180, 203, 740
SspDI	GGCGCC	1 cut(s)	335
SspMI	CTAG	7 cut(s)	183, 464, 500, 950, 1053, 1376, 1409
StyD4I	CCNGG	4 cut(s)	260, 338, 815, 1315
TaaI	ACNGT	3 cut(s)	833, 1027, 1105
TaiI	ACGT	2 cut(s)	215, 921
TaqI	TCGA	4 cut(s)	14, 97, 216, 1456
TaqII	GACCGA	1 cut(s)	1206
TatI	WGTACW	2 cut(s)	579, 910
TfiI	GAWTC	2 cut(s)	662, 899
Tru1I	TTAA	5 cut(s)	533, 606, 807, 966, 1217
Tru9I	TTAA	5 cut(s)	533, 606, 807, 966, 1217
TscAI	CASTG	6 cut(s)	765, 793, 836, 1159, 1305, 1348
TseFI	GTSAC	1 cut(s)	941
TseI	GCWGC	6 cut(s)	378, 550, 644, 854, 1128, 1445
Tsp45I	GTSAC	1 cut(s)	941
TspDTI	ATGAA	2 cut(s)	711, 1365
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	6 cut(s)	765, 793, 836, 1159, 1305, 1348
Van91I	CCANNNNNTGG	1 cut(s)	1304
VpaK11BI	GGWCC	4 cut(s)	283, 457, 886, 1189
XagI	CCTNNNNNAGG	1 cut(s)	1314
XapI	RAATTY	3 cut(s)	119, 961, 1202
XbaI	TCTAGA	1 cut(s)	463
XceI	RCATGY	2 cut(s)	1045, 1285
XmnI	GAANNNNTTC	1 cut(s)	1206
XspI	CTAG	7 cut(s)	183, 464, 500, 950, 1053, 1376, 1409
ZraI	GACGTC	1 cut(s)	919
ZrmI	AGTACT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.