Prupe.1G492400_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
40936957 .. 40939295
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G492400.1

Sequence Viewer

Length: 1350 bp
ATGAACCACTCGAAACCTCTGTCCCGCAATTACACACCCAATGTAGTGAACCAAGTCCTCACTGCCATGCTTAAAAACCAACCCTTCAATTCCGAGCTCGCTGCCTCAGCCACCACCTCTCAGCCATGGATCTCCGAGTCAGTTTCCCAAGTCCTAATCTCCATACCCAGATTCTTCTTCCAGTCCCCAAGCTCCATCGGTCGCCAACATGGCTTTCGACACCGCGCTCAATTAAAGCAACGCAATCTCAGACAAGAATCTTATAGGTTCCATAACAACGTGCTCGTTCTTGGCCCAGCTGCCCACAGAGACCTTCACAAGGTTCAGCTGGGATTGGACAGAGCGCTTGAATTCTTCTACTGGGTCGAAACCCATTTTGGGTTTGTTCACAATGAGCAAACTTGTAGGGATATGGCCGTTGTTTTGGCTAGAGGGAATAAATTGAAAGCCCTCTGGGATTTTCTTAAAGAAATATCGAAGAGAGGGAGTGGTGGGCTGGTGACTACCCAGACCATTACGTGTTTGATAAAAGTCCTAGGAGAGGAGGGACTGGTTACTGATGCATTGGCTGCTTTTTATAGAATGAAGCAGTTTCATTGTAAACCTGATGTGTATGCTTATAACACTATTATTTATGCTCTCTGCAGAGTTGGGAATTTTAATAAGGCCCGGTTTTTGTTGGAGCAGATGGAGTTGCCGGGCTTTAGATGCCCGCCGGACGTGTTCACTTATACTATTTTGATTAGTTCTTATTGTAGATATGGCTTGGAGACTGGGTGTAGGAAGGCCACTAGGAGGCGGATGTGGGAAGCAAACCACATGTTCCGGAACATGCTTTTCAGAGGCTTTGTCCCTGATGTTGTCACGTACAATTCTTTGATCAATGGCTGTTGCAAAACCTACCGGATCGAGAGGGCTTTGGAGTTGTTTGATGATATGAACAGAATGGGTTGTACCCCCAATCGGGTTACTTACGATTCCTTTATTAGATACTACGCTGCTGTTAATGAGATTGATAAGGCGGTTGATATGTTACGGAAGATGCAAAATATGAAACATGGAATGCCCACTTCAAGTTCTTACACTCCAATCATTCATGCCTTTTGTGAAGCAGGAAGGGTTATAGAGGCTCGGGATTTTCTTGCTGAGTTGATCGATGGAGGCTCGATACCTAGGGAGTATACTTATAAGTTAGTTTGCGACGCACTAAATTCAGCTGGAGAATTAAATTTGCTTGATAATGACCTGCATAGAAGAATAAAATATGGTATAGAGAGTAGATATAGGCAGATAATGAAGGTGAAGCCGATTATGACTCGCAAAGGATACGATAGCATGGTGGAAACTTGA

Protein Analysis

450

Amino Acids

51.85

Weight (kDa)

9.39

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 621, 1188
Acc36I ACCTGC 1 cut(s) 1254
AccI GTMKAC 1 cut(s) 1181
AccII CGCG 1 cut(s) 225
AccIII TCCGGA 1 cut(s) 825
AciI CCGC 5 cut(s) 25, 223, 713, 799, 1022
AclWI GGATC 2 cut(s) 137, 914
AcoI YGGCCR 1 cut(s) 414
AcsI RAATTY 4 cut(s) 350, 655, 1210, 1228
AfaI GTAC 2 cut(s) 869, 955
AfeI AGCGCT 1 cut(s) 345
AfiI CCNNNNNNNGG 6 cut(s) 319, 378, 541, 795, 963, 964
AflIII ACRYGT 3 cut(s) 518, 720, 819
AgsI TTSAA 4 cut(s) 88, 350, 445, 1074
AjiI CACGTC 1 cut(s) 721
AjuI GAANNNNNNNTTGG 4 cut(s) 198, 230, 360, 392
AluBI AGCT 5 cut(s) 97, 192, 299, 328, 1217
AluI AGCT 5 cut(s) 97, 192, 299, 328, 1217
Alw21I GWGCWC 2 cut(s) 99, 285
Alw26I GTCTC 2 cut(s) 303, 764
AlwI GGATC 2 cut(s) 137, 914
Ama87I CYCGRG 1 cut(s) 1131
Aor13HI TCCGGA 1 cut(s) 825
Aor51HI AGCGCT 1 cut(s) 345
AoxI GGCC 4 cut(s) 292, 414, 666, 786
ApeKI GCWGC 4 cut(s) 101, 299, 569, 998
ApoI RAATTY 4 cut(s) 350, 655, 1210, 1228
ArsI GACNNNNNNTTYG 1 cut(s) 37
AspA2I CCTAGG 2 cut(s) 535, 1172
AspLEI GCGC 2 cut(s) 227, 346
AspS9I GGNCC 2 cut(s) 293, 667
AsuC2I CCSGG 2 cut(s) 670, 699
AsuHPI GGTGA 2 cut(s) 511, 1312
AvaI CYCGRG 1 cut(s) 1131
AvrII CCTAGG 2 cut(s) 535, 1172
BanII GRGCYC 1 cut(s) 99
Bbv12I GWGCWC 2 cut(s) 99, 285
BbvCI CCTCAGC 1 cut(s) 106
BbvI GCAGC 4 cut(s) 88, 286, 556, 985
BccI CCATC 3 cut(s) 203, 682, 1151
BceAI ACGGC 1 cut(s) 401
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciVI GTATCC 1 cut(s) 1319
BclI TGATCA 1 cut(s) 879
BcnI CCSGG 2 cut(s) 670, 699
BcoDI GTCTC 2 cut(s) 303, 764
BfaI CTAG 4 cut(s) 429, 536, 792, 1173
BfmI CTRYAG 1 cut(s) 643
BfoI RGCGCY 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 1254
BfuI GTATCC 1 cut(s) 1319
BglI GCCNNNNNGGC 1 cut(s) 210
BisI GCNGC 4 cut(s) 102, 300, 570, 999
BlnI CCTAGG 2 cut(s) 535, 1172
BlsI GCNGC 4 cut(s) 103, 301, 571, 1000
Bme1390I CCNGG 2 cut(s) 670, 699
BmeT110I CYCGRG 1 cut(s) 1131
BmgBI CACGTC 1 cut(s) 721
BmgT120I GGNCC 2 cut(s) 293, 667
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 2 cut(s) 670, 699
BmrI ACTGGG 2 cut(s) 370, 783
BmsI GCATC 3 cut(s) 550, 698, 1032
BmuI ACTGGG 2 cut(s) 370, 783
BpmI CTGGAG 1 cut(s) 1239
Bpu10I CCTNAGC 1 cut(s) 106
BpuMI CCSGG 2 cut(s) 670, 699
Bsa29I ATCGAT 1 cut(s) 1155
BsaAI YACGTR 2 cut(s) 519, 867
BsaI GGTCTC 1 cut(s) 303
BsaJI CCNNGG 3 cut(s) 125, 535, 1172
BsaWI WCCGGW 2 cut(s) 825, 903
BsaXI ACNNNNNCTCC 2 cut(s) 761, 791
Bsc4I CCNNNNNNNGG 6 cut(s) 319, 378, 541, 795, 963, 964
Bse1I ACTGG 4 cut(s) 181, 365, 555, 778
BseAI TCCGGA 1 cut(s) 825
BseCI ATCGAT 1 cut(s) 1155
BseDI CCNNGG 3 cut(s) 125, 535, 1172
BseGI GGATG 1 cut(s) 807
BseLI CCNNNNNNNGG 6 cut(s) 319, 378, 541, 795, 963, 964
BseMII CTCAG 4 cut(s) 120, 134, 262, 1137
BseNI ACTGG 4 cut(s) 181, 365, 555, 778
BseRI GAGGAG 1 cut(s) 557
BseXI GCAGC 4 cut(s) 88, 286, 556, 985
BseYI CCCAGC 2 cut(s) 295, 328
Bsh1236I CGCG 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 4 cut(s) 294, 416, 668, 788
BshVI ATCGAT 1 cut(s) 1155
BsiEI CGRYCG 1 cut(s) 202
BsiHKAI GWGCWC 2 cut(s) 99, 285
BsiHKCI CYCGRG 1 cut(s) 1131
BsiSI CCGG 5 cut(s) 670, 698, 716, 826, 904
BslFI GGGAC 4 cut(s) 7, 169, 561, 836
BslI CCNNNNNNNGG 6 cut(s) 319, 378, 541, 795, 963, 964
BsmAI GTCTC 2 cut(s) 303, 764
BsmFI GGGAC 4 cut(s) 7, 169, 561, 836
BsmI GAATGC 1 cut(s) 1068
BsnI GGCC 4 cut(s) 294, 416, 668, 788
Bso31I GGTCTC 1 cut(s) 303
BsoBI CYCGRG 1 cut(s) 1131
Bsp1286I GDGCHC 2 cut(s) 99, 285
Bsp13I TCCGGA 1 cut(s) 825
Bsp143I GATC 4 cut(s) 129, 879, 906, 1152
Bsp19I CCATGG 1 cut(s) 125
BspACI CCGC 5 cut(s) 25, 223, 713, 799, 1022
BspANI GGCC 4 cut(s) 294, 416, 668, 788
BspCNI CTCAG 4 cut(s) 119, 133, 261, 1138
BspDI ATCGAT 1 cut(s) 1155
BspEI TCCGGA 1 cut(s) 825
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 269
BspMAI CTGCAG 1 cut(s) 647
BspMI ACCTGC 1 cut(s) 1254
BspPI GGATC 2 cut(s) 137, 914
BspTNI GGTCTC 1 cut(s) 303
BsrI ACTGG 4 cut(s) 181, 365, 555, 778
BssECI CCNNGG 3 cut(s) 125, 535, 1172
BssMI GATC 4 cut(s) 129, 879, 906, 1152
BssNAI GTATAC 1 cut(s) 1182
BssT1I CCWWGG 3 cut(s) 125, 535, 1172
Bst1107I GTATAC 1 cut(s) 1182
Bst6I CTCTTC 1 cut(s) 473
BstAPI GCANNNNNTGC 1 cut(s) 569
BstBAI YACGTR 2 cut(s) 519, 867
BstC8I GCNNGC 2 cut(s) 99, 713
BstDEI CTNAG 4 cut(s) 106, 120, 248, 1146
BstDSI CCRYGG 1 cut(s) 125
BstENI CCTNNNNNAGG 2 cut(s) 317, 539
BstF5I GGATG 1 cut(s) 807
BstFNI CGCG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 2 cut(s) 227, 346
BstKTI GATC 4 cut(s) 132, 882, 909, 1155
BstMAI GTCTC 2 cut(s) 303, 764
BstMBI GATC 4 cut(s) 129, 879, 906, 1152
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 4 cut(s) 107, 210, 569, 708
BstNSI RCATGY 2 cut(s) 823, 835
BstSCI CCNGG 2 cut(s) 668, 697
BstSFI CTRYAG 1 cut(s) 643
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 4 cut(s) 88, 286, 556, 985
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BstZ17I GTATAC 1 cut(s) 1182
Bsu15I ATCGAT 1 cut(s) 1155
BsuI GTATCC 1 cut(s) 1319
BsuRI GGCC 4 cut(s) 294, 416, 668, 788
BsuTUI ATCGAT 1 cut(s) 1155
BtgI CCRYGG 1 cut(s) 125
BtrI CACGTC 1 cut(s) 721
BtsCI GGATG 1 cut(s) 807
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
BveI ACCTGC 1 cut(s) 1254
Cac8I GCNNGC 2 cut(s) 99, 713
CfoI GCGC 2 cut(s) 227, 346
Cfr13I GGNCC 2 cut(s) 293, 667
ClaI ATCGAT 1 cut(s) 1155
CseI GACGC 1 cut(s) 1211
Csp6I GTAC 2 cut(s) 868, 954
CviAII CATG 8 cut(s) 67, 126, 209, 820, 832, 1058, 1097, 1336
CviQI GTAC 2 cut(s) 868, 954
DdeI CTNAG 4 cut(s) 106, 120, 248, 1146
DpnI GATC 4 cut(s) 131, 881, 908, 1154
DpnII GATC 4 cut(s) 129, 879, 906, 1152
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 473
EarI CTCTTC 1 cut(s) 473
EciI GGCGGA 1 cut(s) 814
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 3 cut(s) 125, 535, 1172
Eco24I GRGCYC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 303
Eco47III AGCGCT 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 1131
EcoICRI GAGCTC 1 cut(s) 97
EcoNI CCTNNNNNAGG 2 cut(s) 317, 539
EcoRI GAATTC 1 cut(s) 350
EcoT14I CCWWGG 3 cut(s) 125, 535, 1172
EcoT22I ATGCAT 1 cut(s) 565
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 3 cut(s) 125, 535, 1172
FaeI CATG 8 cut(s) 70, 129, 212, 823, 835, 1061, 1100, 1339
FaqI GGGAC 4 cut(s) 7, 169, 561, 836
FatI CATG 8 cut(s) 66, 125, 208, 819, 831, 1057, 1096, 1335
FauI CCCGC 2 cut(s) 32, 720
FbaI TGATCA 1 cut(s) 879
FblI GTMKAC 1 cut(s) 1181
Fnu4HI GCNGC 4 cut(s) 102, 300, 570, 999
FokI GGATG 1 cut(s) 814
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 4 cut(s) 102, 300, 570, 999
FspBI CTAG 4 cut(s) 429, 536, 792, 1173
GlaI GCGC 2 cut(s) 226, 345
GluI GCNGC 4 cut(s) 102, 300, 570, 999
GsaI CCCAGC 2 cut(s) 299, 332
GsuI CTGGAG 1 cut(s) 1239
HaeII RGCGCY 1 cut(s) 347
HaeIII GGCC 4 cut(s) 294, 416, 668, 788
HapII CCGG 5 cut(s) 670, 698, 716, 826, 904
HgaI GACGC 1 cut(s) 1211
HhaI GCGC 2 cut(s) 227, 346
Hin1II CATG 8 cut(s) 70, 129, 212, 823, 835, 1061, 1100, 1339
Hin6I GCGC 2 cut(s) 225, 344
HinP1I GCGC 2 cut(s) 225, 344
HinfI GANTC 5 cut(s) 137, 171, 257, 977, 1315
HpaII CCGG 5 cut(s) 670, 698, 716, 826, 904
HphI GGTGA 2 cut(s) 511, 1312
Hpy166II GTNNAC 5 cut(s) 49, 388, 602, 726, 1182
Hpy188I TCNGA 4 cut(s) 94, 136, 251, 842
Hpy188III TCNNGA 3 cut(s) 826, 910, 1133
Hpy8I GTNNAC 5 cut(s) 49, 388, 602, 726, 1182
Hpy99I CGWCG 1 cut(s) 1205
HpyAV CCTTC 5 cut(s) 94, 323, 778, 1110, 1291
HpyCH4IV ACGT 4 cut(s) 279, 518, 720, 866
HpyCH4V TGCA 5 cut(s) 563, 645, 894, 1045, 1249
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 210, 569, 708
HpyF3I CTNAG 4 cut(s) 106, 120, 248, 1146
HpySE526I ACGT 4 cut(s) 279, 518, 720, 866
Hsp92II CATG 8 cut(s) 70, 129, 212, 823, 835, 1061, 1100, 1339
HspAI GCGC 2 cut(s) 225, 344
Kpn2I TCCGGA 1 cut(s) 825
Ksp22I TGATCA 1 cut(s) 879
Kzo9I GATC 4 cut(s) 129, 879, 906, 1152
LmnI GCTCC 2 cut(s) 197, 682
Lsp1109I GCAGC 4 cut(s) 88, 286, 556, 985
LweI GCATC 3 cut(s) 550, 698, 1032
MaeI CTAG 4 cut(s) 429, 536, 792, 1173
MaeII ACGT 4 cut(s) 279, 518, 720, 866
MaeIII GTNAC 5 cut(s) 499, 553, 862, 967, 1032
MalI GATC 4 cut(s) 131, 881, 908, 1154
MboI GATC 4 cut(s) 129, 879, 906, 1152
MboII GAAGA 6 cut(s) 166, 169, 346, 490, 1051, 1266
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 2 cut(s) 99, 285
MlyI GAGTC 2 cut(s) 146, 1309
MmeI TCCRAC 1 cut(s) 660
Mph1103I ATGCAT 1 cut(s) 565
MroI TCCGGA 1 cut(s) 825
MseI TTAA 6 cut(s) 72, 233, 465, 660, 1005, 1226
MslI CAYNNNNRTG 1 cut(s) 65
MspA1I CMGCKG 3 cut(s) 299, 328, 1217
MspI CCGG 5 cut(s) 670, 698, 716, 826, 904
MspR9I CCNGG 2 cut(s) 670, 699
Mva1269I GAATGC 1 cut(s) 1068
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 4 cut(s) 107, 210, 569, 708
NciI CCSGG 2 cut(s) 670, 699
NcoI CCATGG 1 cut(s) 125
NdeII GATC 4 cut(s) 129, 879, 906, 1152
NlaIII CATG 8 cut(s) 70, 129, 212, 823, 835, 1061, 1100, 1339
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 2 cut(s) 499, 862
NsiI ATGCAT 1 cut(s) 565
NspI RCATGY 2 cut(s) 823, 835
PciI ACATGT 1 cut(s) 819
PctI GAATGC 1 cut(s) 1068
PfeI GAWTC 3 cut(s) 171, 257, 977
PkrI GCNGC 4 cut(s) 103, 301, 571, 1000
PleI GAGTC 2 cut(s) 145, 1309
PpsI GAGTC 2 cut(s) 145, 1309
Ppu21I YACGTR 2 cut(s) 519, 867
PscI ACATGT 1 cut(s) 819
PsiI TTATAA 2 cut(s) 621, 1188
Psp124BI GAGCTC 1 cut(s) 99
PspFI CCCAGC 2 cut(s) 295, 328
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 2 cut(s) 293, 667
PstI CTGCAG 1 cut(s) 647
PsuI RGATCY 1 cut(s) 129
PvuII CAGCTG 3 cut(s) 299, 328, 1217
RsaI GTAC 2 cut(s) 869, 955
RsaNI GTAC 2 cut(s) 868, 954
RseI CAYNNNNRTG 1 cut(s) 65
SacI GAGCTC 1 cut(s) 99
SaqAI TTAA 6 cut(s) 72, 233, 465, 660, 1005, 1226
SatI GCNGC 4 cut(s) 102, 300, 570, 999
Sau3AI GATC 4 cut(s) 129, 879, 906, 1152
Sau96I GGNCC 2 cut(s) 293, 667
SchI GAGTC 2 cut(s) 146, 1309
ScrFI CCNGG 2 cut(s) 670, 699
SduI GDGCHC 2 cut(s) 99, 285
SfaNI GCATC 3 cut(s) 550, 698, 1032
SfcI CTRYAG 1 cut(s) 643
SmiMI CAYNNNNRTG 1 cut(s) 65
SsiI CCGC 5 cut(s) 25, 223, 713, 799, 1022
SspMI CTAG 4 cut(s) 429, 536, 792, 1173
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 2 cut(s) 668, 697
StyI CCWWGG 3 cut(s) 125, 535, 1172
TaiI ACGT 4 cut(s) 282, 521, 723, 869
TaqI TCGA 7 cut(s) 11, 217, 366, 476, 909, 1155, 1166
TaqII GACCGA 1 cut(s) 188
TfiI GAWTC 3 cut(s) 171, 257, 977
Tru1I TTAA 6 cut(s) 72, 233, 465, 660, 1005, 1226
Tru9I TTAA 6 cut(s) 72, 233, 465, 660, 1005, 1226
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 2 cut(s) 499, 862
TseI GCWGC 4 cut(s) 101, 299, 569, 998
Tsp45I GTSAC 2 cut(s) 499, 862
TspDTI ATGAA 7 cut(s) 17, 584, 599, 953, 1067, 1085, 1310
TspGWI ACGGA 1 cut(s) 1051
TspRI CASTG 1 cut(s) 67
XagI CCTNNNNNAGG 2 cut(s) 317, 539
XapI RAATTY 4 cut(s) 350, 655, 1210, 1228
XceI RCATGY 2 cut(s) 823, 835
XmaJI CCTAGG 2 cut(s) 535, 1172
XmiI GTMKAC 1 cut(s) 1181
XspI CTAG 4 cut(s) 429, 536, 792, 1173
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.