Rmu_sc0006997.1_g000002

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006997.1
Physical Location & Seq
Forward (+)
12757 .. 15027
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006997.1_g000002.1.cds

Sequence Viewer

Length: 1656 bp
atgctcaaaaaccaaccttttgacccaaacccctcagtttcagccaccacaactcaaccatggacctccgactcagtctcccaagtcctaacctccatccccagattcttcttccagtcccctcgctccgtaggtcgccaaaccggcttccggcaccgcgctccgttaaagcaacgccatctcaggcgagaaacatatgaattccacaacgacgtgcgcccagcagcggcccacagagacctcagcaaggtcaatctgggagtggacaaagccctcgatttttactactgggtcgaaacccatttcgggttcaaccacagtgagcgaacttgcagagacatggctgtcgttttggctaaagggaatcggttgaaggccctctgggattttctgaaagacatgtcgaagagagggagtggtgaaagccctcctcttgtaacgacacagtccatcacctgtttgatgaaatgcctaggagaagagggattggtcaatgaagcattggcggctttctataggatgaagcagtttcattgcaaaccggatgtgtatgcttacaacactattatttacgcgctttgcagggttggggatttcaagaaggctcggtttttgctggagcagatggagctgccgggttttagatgcccgccggatacattcacttacacgattttgataagctcttattgtagatatgggttggagactgggtgcaggaaggccactaggaggaggttgtgggaagcaaaccacatgtttcggaatatgctctttagagggtttgttcctgatgttgttacttacaatgctttgatcaatggttgttgcaagacttataggatagagagggcgttggagttgtttggggatatgaagaagagggattgtacccccaaccgggttacttatgattcgtttattagatactatgctgctgttaatgagattgacaaggctgtggatatgttaagaaggatgcagaatatgaatcatggattggccacttcaagttcgtatactccaatcattcatgccatgtgtgaagcaggaagggttacagaggcttggggttttcttgttgagttggttgatggagggtcaatacctagagaatatacttacaaattagtttgcaatgcaatgagttcagctggagaggtcagtttacttgatgatggcttgcgaaaaagaatagaagatggtatgcagaggagatataagcacgtaatgaaggtgaagccaataatgactcgcaaaggtttggctgttctgtataagggcaacaaggatggtgacgccaggtttctgtgcttcaaaatcttgtttgatgtgatgttaatttttcttaatgaacaatctgaagatgagcaagggtccaaagaattgcaatccatatccaatacaaactttcttcctctctaccctgccttgattgaagacgaagatccaatccccttgtacgcgcaaaagctgcttgtgatgctgattgattatagttacatcaaaattgcagacattctgcatctgaagatagtcttgcaatgctttgagtttttgctgggcgatctctcaagtgcaaatgtgaacaatgttatgctatgcctggctctgacatctgctcctgaaatggaaaccatgcaagttactttctga

Protein Analysis

551

Amino Acids

63.27

Weight (kDa)

8.77

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AccB1I GGYRCC 1 cut(s) 153
AccI GTMKAC 1 cut(s) 1019
AccII CGCG 3 cut(s) 159, 575, 1466
AciI CCGC 4 cut(s) 157, 227, 506, 650
AclWI GGATC 1 cut(s) 1442
AcoI YGGCCR 1 cut(s) 1002
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 2 cut(s) 1383, 1550
AcyI GRCGYC 1 cut(s) 1299
AfaI GTAC 2 cut(s) 892, 1463
AfiI CCNNNNNNNGG 7 cut(s) 150, 226, 247, 306, 732, 900, 901
AflIII ACRYGT 2 cut(s) 399, 756
AgsI TTSAA 6 cut(s) 313, 373, 598, 1011, 1318, 1439
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 2 cut(s) 1301, 1605
AjuI GAANNNNNNNTTGG 2 cut(s) 983, 1015
AluBI AGCT 4 cut(s) 631, 684, 1154, 1474
AluI AGCT 4 cut(s) 631, 684, 1154, 1474
Alw26I GTCTC 4 cut(s) 82, 231, 330, 701
AlwI GGATC 1 cut(s) 1442
AoxI GGCC 4 cut(s) 228, 375, 723, 1002
ApeKI GCWGC 4 cut(s) 224, 631, 935, 1474
ApoI RAATTY 1 cut(s) 200
AspA2I CCTAGG 1 cut(s) 472
AspLEI GCGC 4 cut(s) 161, 219, 577, 1468
AspS9I GGNCC 4 cut(s) 63, 229, 376, 1377
AsuC2I CCSGG 2 cut(s) 636, 902
AsuHPI GGTGA 4 cut(s) 431, 445, 1249, 1307
AvaII GGWCC 2 cut(s) 63, 1377
AvrII CCTAGG 1 cut(s) 472
BalI TGGCCA 1 cut(s) 1004
BanI GGYRCC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 1446
BbvCI CCTCAGC 1 cut(s) 242
BbvI GCAGC 4 cut(s) 236, 618, 922, 1461
BccI CCATC 8 cut(s) 104, 186, 458, 619, 1088, 1172, 1196, 1286
BciT130I CCWGG 2 cut(s) 1303, 1607
BciVI GTATCC 1 cut(s) 649
BclI TGATCA 1 cut(s) 816
BcnI CCSGG 2 cut(s) 636, 902
BcoDI GTCTC 4 cut(s) 82, 231, 330, 701
BfaI CTAG 3 cut(s) 473, 729, 1110
BfmI CTRYAG 1 cut(s) 514
BfuI GTATCC 1 cut(s) 649
BglI GCCNNNNNGGC 1 cut(s) 144
BisI GCNGC 6 cut(s) 225, 228, 507, 632, 936, 1475
BlnI CCTAGG 1 cut(s) 472
BlsI GCNGC 6 cut(s) 226, 229, 508, 633, 937, 1476
Bme1390I CCNGG 4 cut(s) 636, 902, 1303, 1607
Bme18I GGWCC 2 cut(s) 63, 1377
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 4 cut(s) 63, 229, 376, 1377
BmiI GGNNCC 2 cut(s) 155, 1378
BmrFI CCNGG 4 cut(s) 636, 902, 1303, 1607
BmrI ACTGGG 2 cut(s) 298, 720
BmsI GCATC 4 cut(s) 635, 969, 1473, 1534
BmuI ACTGGG 2 cut(s) 298, 720
BpiI GAAGAC 1 cut(s) 1446
BpmI CTGGAG 2 cut(s) 638, 1176
Bpu10I CCTNAGC 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 1558
BpuMI CCSGG 2 cut(s) 636, 902
BsaAI YACGTR 1 cut(s) 1228
BsaHI GRCGYC 1 cut(s) 1299
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 59, 472
BsaWI WCCGGW 1 cut(s) 541
BsaXI ACNNNNNCTCC 6 cut(s) 62, 92, 698, 728, 1606, 1636
Bsc4I CCNNNNNNNGG 7 cut(s) 150, 226, 247, 306, 732, 900, 901
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 3 cut(s) 115, 293, 715
Bse3DI GCAATG 4 cut(s) 532, 1144, 1149, 1550
BseBI CCWGG 2 cut(s) 1303, 1607
BseDI CCNNGG 2 cut(s) 59, 472
BseGI GGATG 5 cut(s) 96, 525, 550, 984, 1297
BseLI CCNNNNNNNGG 7 cut(s) 150, 226, 247, 306, 732, 900, 901
BseMI GCAATG 4 cut(s) 532, 1144, 1149, 1550
BseMII CTCAG 4 cut(s) 48, 87, 196, 256
BseNI ACTGG 3 cut(s) 115, 293, 715
BseRI GAGGAG 3 cut(s) 420, 748, 1228
BseXI GCAGC 4 cut(s) 236, 618, 922, 1461
BseYI CCCAGC 2 cut(s) 220, 1561
BsgI GTGCAG 1 cut(s) 736
Bsh1236I CGCG 3 cut(s) 159, 575, 1466
BshFI GGCC 4 cut(s) 230, 377, 725, 1004
BshNI GGYRCC 1 cut(s) 153
BsiSI CCGG 6 cut(s) 144, 151, 542, 635, 653, 901
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 7 cut(s) 150, 226, 247, 306, 732, 900, 901
BsmAI GTCTC 4 cut(s) 82, 231, 330, 701
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 4 cut(s) 230, 377, 725, 1004
Bso31I GGTCTC 1 cut(s) 231
Bsp143I GATC 3 cut(s) 816, 1447, 1567
Bsp19I CCATGG 1 cut(s) 59
BspACI CCGC 4 cut(s) 157, 227, 506, 650
BspANI GGCC 4 cut(s) 230, 377, 725, 1004
BspCNI CTCAG 4 cut(s) 47, 86, 195, 255
BspFNI CGCG 3 cut(s) 159, 575, 1466
BspLI GGNNCC 2 cut(s) 155, 1378
BspPI GGATC 1 cut(s) 1442
BspT107I GGYRCC 1 cut(s) 153
BspTNI GGTCTC 1 cut(s) 231
BsrDI GCAATG 4 cut(s) 532, 1144, 1149, 1550
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 3 cut(s) 115, 293, 715
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 59, 472
BssMI GATC 3 cut(s) 816, 1447, 1567
BssNAI GTATAC 1 cut(s) 1020
BssNI GRCGYC 1 cut(s) 1299
BssT1I CCWWGG 2 cut(s) 59, 472
Bst1107I GTATAC 1 cut(s) 1020
Bst2UI CCWGG 2 cut(s) 1303, 1607
Bst4CI ACNGT 2 cut(s) 320, 447
Bst6I CTCTTC 3 cut(s) 401, 474, 875
BstACI GRCGYC 1 cut(s) 1299
BstAPI GCANNNNNTGC 1 cut(s) 1474
BstBAI YACGTR 1 cut(s) 1228
BstC8I GCNNGC 2 cut(s) 650, 1184
BstDEI CTNAG 4 cut(s) 34, 73, 182, 242
BstDSI CCRYGG 1 cut(s) 59
BstENI CCTNNNNNAGG 1 cut(s) 245
BstF5I GGATG 5 cut(s) 96, 525, 550, 984, 1297
BstFNI CGCG 3 cut(s) 159, 575, 1466
BstHHI GCGC 4 cut(s) 161, 219, 577, 1468
BstKTI GATC 3 cut(s) 819, 1450, 1570
BstMAI GTCTC 4 cut(s) 82, 231, 330, 701
BstMBI GATC 3 cut(s) 816, 1447, 1567
BstMWI GCNNNNNNNGC 5 cut(s) 144, 506, 628, 1474, 1483
BstNI CCWGG 2 cut(s) 1303, 1607
BstNSI RCATGY 2 cut(s) 403, 760
BstSCI CCNGG 4 cut(s) 634, 900, 1301, 1605
BstSFI CTRYAG 1 cut(s) 514
BstUI CGCG 3 cut(s) 159, 575, 1466
BstV1I GCAGC 4 cut(s) 236, 618, 922, 1461
BstV2I GAAGAC 1 cut(s) 1446
BstX2I RGATCY 1 cut(s) 1447
BstYI RGATCY 1 cut(s) 1447
BstZ17I GTATAC 1 cut(s) 1020
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 4 cut(s) 230, 377, 725, 1004
BtgI CCRYGG 1 cut(s) 59
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 5 cut(s) 96, 525, 550, 984, 1297
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 2 cut(s) 650, 1184
CfoI GCGC 4 cut(s) 161, 219, 577, 1468
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 4 cut(s) 63, 229, 376, 1377
CseI GACGC 1 cut(s) 1307
Csp6I GTAC 2 cut(s) 891, 1462
CviAII CATG 8 cut(s) 60, 340, 400, 757, 995, 1034, 1039, 1639
CviQI GTAC 2 cut(s) 891, 1462
DdeI CTNAG 4 cut(s) 34, 73, 182, 242
DpnI GATC 3 cut(s) 818, 1449, 1569
DpnII GATC 3 cut(s) 816, 1447, 1567
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 1 cut(s) 1002
Eam1104I CTCTTC 3 cut(s) 401, 474, 875
EarI CTCTTC 3 cut(s) 401, 474, 875
Eco130I CCWWGG 2 cut(s) 59, 472
Eco31I GGTCTC 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 63, 1377
Eco57I CTGAAG 2 cut(s) 1383, 1550
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 376
EcoRI GAATTC 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 1301, 1605
EcoT14I CCWWGG 2 cut(s) 59, 472
ErhI CCWWGG 2 cut(s) 59, 472
FaeI CATG 8 cut(s) 63, 343, 403, 760, 998, 1037, 1042, 1642
FalI AAGNNNNNCTT 2 cut(s) 1523, 1555
FaqI GGGAC 1 cut(s) 103
FatI CATG 8 cut(s) 59, 339, 399, 756, 994, 1033, 1038, 1638
FauI CCCGC 1 cut(s) 657
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 816
FblI GTMKAC 1 cut(s) 1019
Fnu4HI GCNGC 6 cut(s) 225, 228, 507, 632, 936, 1475
FokI GGATG 5 cut(s) 83, 532, 557, 991, 1304
Fsp4HI GCNGC 6 cut(s) 225, 228, 507, 632, 936, 1475
FspBI CTAG 3 cut(s) 473, 729, 1110
GlaI GCGC 4 cut(s) 160, 218, 576, 1467
GluI GCNGC 6 cut(s) 225, 228, 507, 632, 936, 1475
GsaI CCCAGC 2 cut(s) 224, 1565
GsuI CTGGAG 2 cut(s) 638, 1176
HaeIII GGCC 4 cut(s) 230, 377, 725, 1004
HapII CCGG 6 cut(s) 144, 151, 542, 635, 653, 901
HgaI GACGC 1 cut(s) 1307
HhaI GCGC 4 cut(s) 161, 219, 577, 1468
Hin1I GRCGYC 1 cut(s) 1299
Hin1II CATG 8 cut(s) 63, 343, 403, 760, 998, 1037, 1042, 1642
Hin6I GCGC 4 cut(s) 159, 217, 575, 1466
HinP1I GCGC 4 cut(s) 159, 217, 575, 1466
HinfI GANTC 6 cut(s) 71, 105, 364, 914, 991, 1252
HpaII CCGG 6 cut(s) 144, 151, 542, 635, 653, 901
HphI GGTGA 4 cut(s) 431, 445, 1249, 1307
Hpy166II GTNNAC 4 cut(s) 265, 1020, 1169, 1588
Hpy188I TCNGA 7 cut(s) 70, 393, 765, 1363, 1530, 1614, 1655
Hpy188III TCNNGA 3 cut(s) 598, 791, 1625
Hpy8I GTNNAC 4 cut(s) 265, 1020, 1169, 1588
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 6 cut(s) 367, 595, 715, 969, 1047, 1228
HpyCH4III ACNGT 2 cut(s) 320, 447
HpyCH4IV ACGT 2 cut(s) 213, 1227
HpyF10VI GCNNNNNNNGC 5 cut(s) 144, 506, 628, 1474, 1483
HpyF3I CTNAG 4 cut(s) 34, 73, 182, 242
HpySE526I ACGT 2 cut(s) 213, 1227
Hsp92I GRCGYC 1 cut(s) 1299
Hsp92II CATG 8 cut(s) 63, 343, 403, 760, 998, 1037, 1042, 1642
HspAI GCGC 4 cut(s) 159, 217, 575, 1466
Ksp22I TGATCA 1 cut(s) 816
Kzo9I GATC 3 cut(s) 816, 1447, 1567
LmnI GCTCC 5 cut(s) 131, 166, 619, 628, 1627
Lsp1109I GCAGC 4 cut(s) 236, 618, 922, 1461
LweI GCATC 4 cut(s) 635, 969, 1473, 1534
MaeI CTAG 3 cut(s) 473, 729, 1110
MaeII ACGT 2 cut(s) 213, 1227
MaeIII GTNAC 7 cut(s) 436, 799, 904, 1057, 1295, 1499, 1645
MalI GATC 3 cut(s) 818, 1449, 1569
MboI GATC 3 cut(s) 816, 1447, 1567
MflI RGATCY 1 cut(s) 1447
MlsI TGGCCA 1 cut(s) 1004
MluCI AATT 5 cut(s) 200, 1127, 1341, 1385, 1509
MluNI TGGCCA 1 cut(s) 1004
MlyI GAGTC 2 cut(s) 65, 1246
MmeI TCCRAC 3 cut(s) 93, 684, 837
Mox20I TGGCCA 1 cut(s) 1004
MscI TGGCCA 1 cut(s) 1004
MseI TTAA 5 cut(s) 167, 942, 971, 1340, 1350
Msp20I TGGCCA 1 cut(s) 1004
MspA1I CMGCKG 2 cut(s) 227, 1154
MspI CCGG 6 cut(s) 144, 151, 542, 635, 653, 901
MspR9I CCNGG 4 cut(s) 636, 902, 1303, 1607
MvaI CCWGG 2 cut(s) 1303, 1607
MvnI CGCG 3 cut(s) 159, 575, 1466
MwoI GCNNNNNNNGC 5 cut(s) 144, 506, 628, 1474, 1483
NciI CCSGG 2 cut(s) 636, 902
NcoI CCATGG 1 cut(s) 59
NdeI CATATG 1 cut(s) 196
NdeII GATC 3 cut(s) 816, 1447, 1567
NlaIII CATG 8 cut(s) 63, 343, 403, 760, 998, 1037, 1042, 1642
NlaIV GGNNCC 2 cut(s) 155, 1378
NmuCI GTSAC 1 cut(s) 1295
NspI RCATGY 2 cut(s) 403, 760
PciI ACATGT 2 cut(s) 399, 756
PfeI GAWTC 4 cut(s) 105, 364, 914, 991
PflFI GACNNNGTC 2 cut(s) 74, 445
PkrI GCNGC 6 cut(s) 226, 229, 508, 633, 937, 1476
PleI GAGTC 2 cut(s) 65, 1246
PpsI GAGTC 2 cut(s) 65, 1246
Ppu21I YACGTR 1 cut(s) 1228
PscI ACATGT 2 cut(s) 399, 756
Psp6I CCWGG 2 cut(s) 1301, 1605
PspFI CCCAGC 2 cut(s) 220, 1561
PspGI CCWGG 2 cut(s) 1301, 1605
PspN4I GGNNCC 2 cut(s) 155, 1378
PspPI GGNCC 4 cut(s) 63, 229, 376, 1377
PsuI RGATCY 1 cut(s) 1447
PsyI GACNNNGTC 2 cut(s) 74, 445
PvuII CAGCTG 1 cut(s) 1154
RsaI GTAC 2 cut(s) 892, 1463
RsaNI GTAC 2 cut(s) 891, 1462
SaqAI TTAA 5 cut(s) 167, 942, 971, 1340, 1350
SatI GCNGC 6 cut(s) 225, 228, 507, 632, 936, 1475
Sau3AI GATC 3 cut(s) 816, 1447, 1567
Sau96I GGNCC 4 cut(s) 63, 229, 376, 1377
SchI GAGTC 2 cut(s) 65, 1246
ScrFI CCNGG 4 cut(s) 636, 902, 1303, 1607
SfaNI GCATC 4 cut(s) 635, 969, 1473, 1534
SfcI CTRYAG 1 cut(s) 514
SinI GGWCC 2 cut(s) 63, 1377
SmlI CTYRAG 1 cut(s) 1573
SmoI CTYRAG 1 cut(s) 1573
Sse9I AATT 5 cut(s) 200, 1127, 1341, 1385, 1509
SsiI CCGC 4 cut(s) 157, 227, 506, 650
SspMI CTAG 3 cut(s) 473, 729, 1110
StyD4I CCNGG 4 cut(s) 634, 900, 1301, 1605
StyI CCWWGG 2 cut(s) 59, 472
TaaI ACNGT 2 cut(s) 320, 447
TaiI ACGT 2 cut(s) 216, 1230
TaqI TCGA 3 cut(s) 276, 294, 404
TasI AATT 5 cut(s) 200, 1127, 1341, 1385, 1509
TauI GCSGC 2 cut(s) 230, 509
TfiI GAWTC 4 cut(s) 105, 364, 914, 991
Tru1I TTAA 5 cut(s) 167, 942, 971, 1340, 1350
Tru9I TTAA 5 cut(s) 167, 942, 971, 1340, 1350
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 1295
TseI GCWGC 4 cut(s) 224, 631, 935, 1474
Tsp45I GTSAC 1 cut(s) 1295
TspGWI ACGGA 2 cut(s) 118, 153
TspRI CASTG 1 cut(s) 325
Tth111I GACNNNGTC 2 cut(s) 74, 445
VpaK11BI GGWCC 2 cut(s) 63, 1377
XagI CCTNNNNNAGG 1 cut(s) 245
XapI RAATTY 1 cut(s) 200
XceI RCATGY 2 cut(s) 403, 760
XmaJI CCTAGG 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 1019
XspI CTAG 3 cut(s) 473, 729, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.