Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006654

Physical Location & Seq

Genomic Coordinates Forward (+)

48934695 .. 48936006

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG242700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCTACCTCAACAGTCAAGTGCGCAGCTGCACTCCTTTGTTTACAAATGGAGGCCAGGGATGACTTTCAAATCACTCTTCTTCGAATTATTGAATCTGTTGCCGACGAGTTGCTTGTAATTCTCAAAAGCCCTGATATTTTTACCCGTGAGGTTCTCCCCAGTTTGGCTGTTCTGTATAAGGGCAACAAGGATGGTGACGCCAGGTTTCTGTGCTTCAAAATCTTGTTTGATGTGATGCAGCAAGGTATAAGATATATCATGGACTTTGACATCAATGTTGCTGTATTGCTAGAGTTAAGTAGGTCTCACGGAGGAAGTGTGACAGATATAGCTTCAGAATGTGTTGTCTTGTTGCTCAAGGCAGCTCCAAGGGAAGGCACAGCTGGTCTACTAACTAATGTTCCAAAAGTTACTGCAATGCTTGAGTCTTGGCATAGAGGCATATCTCATTTGTTGGTGCAGCGAGTGCTACATGCAGTTGGTTATGCTTGTAGGCAGTATTTGTTACATGCAATGATATTGTCGATGTCGATTCCTGAGATTCCAAGAATTGAGGGCATAGTTTCTGAGCTTAAAGGTTCAGGTGTACCTACTTTAGCCACTGCTGCTTTTCATGTGGCTGTGGAGTTTCAGCGGCTTCCTCGCTGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0001932 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0007349 GO:0007399 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009555 GO:0009556 GO:0009574 GO:0009653 GO:0009966 GO:0009987 GO:0010245 GO:0010342 GO:0010646 GO:0010975 GO:0015630 GO:0015631 GO:0016043 GO:0019220 GO:0019222 GO:0019953 GO:0022008 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0030054 GO:0030154 GO:0030334 GO:0031323 GO:0031344 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032506 GO:0032872 GO:0032879 GO:0034293 GO:0040012 GO:0042325 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043408 GO:0043934 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045595 GO:0045664 GO:0046328 GO:0048229 GO:0048236 GO:0048583 GO:0048646 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051270 GO:0051301 GO:0051321 GO:0051704 GO:0051960 GO:0055044 GO:0060255 GO:0060284 GO:0061640 GO:0065007 GO:0070302 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090036 GO:0120035 GO:1900744 GO:1902407 GO:1902410 GO:1902531 GO:1903046 GO:1903047 GO:2000026 GO:2000145 GO:2001222

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

218

Amino Acids

24.01

Weight (kDa)

6.59

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_ULK4	PF23606	17 - 81	1.6e-18	Serine/threonine-protein kinase ULK4-like, HEAT repeats
ARM_RUK	PF24970	80 - 217	4.9e-54	RUNKEL ARM-repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77405
fragaria_vesca	FvH4_2g27550
malus_domestica	MD00G1030400.v1.1
prunus_persica	Prupe.1G492400_v2.0.a1
pyrus_communis	pycom15g30800
rosa_chinensis	RchiOBHm_Chr4g0420811 RchiOBHm_Chr4g0420821
rosa_laevigata	RLG00000007736 RLG00000011697
rosa_multiflora	Rmu_co8321563.1_g000001 Rmu_sc0005104.1_g000002 Rmu_sc0006997.1_g000002 Rmu_sc0006997.1_g000003
rosa_roxburghii	Rroxscaffold_5G00363250
rosa_rugosa	Rorug04G0166200 Rorug04G0166300 Rorug06G0261900
rosa_samantha	Rh4AG227600 Rh4BG230600 Rh4BG230700 Rh4BG230800 Rh4CG242600 Rh4CG242700 Rh6BG381400
rosa_wichuraiana	Rw4G019690 Rw6G032550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	391
AciI	CCGC	1 cut(s)	637
AcuI	CTGAAG	1 cut(s)	321
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	591
AfiI	CCNNNNNNNGG	2 cut(s)	166, 377
AgsI	TTSAA	3 cut(s)	71, 95, 220
AjnI	CCWGG	2 cut(s)	56, 203
AluBI	AGCT	5 cut(s)	29, 335, 368, 386, 574
AluI	AGCT	5 cut(s)	29, 335, 368, 386, 574
Alw26I	GTCTC	1 cut(s)	312
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	7 cut(s)	26, 29, 241, 365, 463, 608, 648
AspLEI	GCGC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	209
AsuII	TTCGAA	1 cut(s)	85
BbvI	GCAGC	7 cut(s)	16, 38, 253, 377, 475, 595, 635
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	2 cut(s)	58, 205
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	293
BisI	GCNGC	8 cut(s)	27, 30, 242, 366, 464, 609, 638, 649
BlsI	GCNGC	8 cut(s)	28, 31, 243, 367, 465, 610, 639, 650
Bme1390I	CCNGG	2 cut(s)	58, 205
BmrFI	CCNGG	2 cut(s)	58, 205
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	85
BpuEI	CTTGAG	2 cut(s)	344, 446
BsaHI	GRCGYC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	57, 371
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 377
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	2 cut(s)	426, 522
BseBI	CCWGG	2 cut(s)	58, 205
BseDI	CCNNGG	2 cut(s)	57, 371
BseGI	GGATG	2 cut(s)	67, 199
BseLI	CCNNNNNNNGG	2 cut(s)	166, 377
BseMI	GCAATG	2 cut(s)	426, 522
BseMII	CTCAG	2 cut(s)	531, 561
BseNI	ACTGG	1 cut(s)	162
BseXI	GCAGC	7 cut(s)	16, 38, 253, 377, 475, 595, 635
BsgI	GTGCAG	2 cut(s)	15, 482
BshFI	GGCC	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	166, 377
BsmAI	GTCTC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	312
Bsp119I	TTCGAA	1 cut(s)	85
BspACI	CCGC	1 cut(s)	637
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	532, 562
BspT104I	TTCGAA	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	312
BsrDI	GCAATG	2 cut(s)	426, 522
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	57, 371
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	371
Bst2UI	CCWGG	2 cut(s)	58, 205
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	84
BstACI	GRCGYC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	469
BstBI	TTCGAA	1 cut(s)	85
BstDEI	CTNAG	2 cut(s)	540, 570
BstF5I	GGATG	2 cut(s)	67, 199
BstHHI	GCGC	1 cut(s)	26
BstMAI	GTCTC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	2 cut(s)	469, 608
BstNI	CCWGG	2 cut(s)	58, 205
BstNSI	RCATGY	3 cut(s)	479, 515, 655
BstSCI	CCNGG	2 cut(s)	56, 203
BstV1I	GCAGC	7 cut(s)	16, 38, 253, 377, 475, 595, 635
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	67, 199
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	1 cut(s)	603
CfoI	GCGC	1 cut(s)	26
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	590
CviAII	CATG	5 cut(s)	262, 476, 512, 617, 652
CviQI	GTAC	1 cut(s)	590
DdeI	CTNAG	2 cut(s)	540, 570
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	371
Eco31I	GGTCTC	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	321
EcoRII	CCWGG	2 cut(s)	56, 203
EcoT14I	CCWWGG	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	5 cut(s)	265, 479, 515, 620, 655
FatI	CATG	5 cut(s)	261, 475, 511, 616, 651
FblI	GTMKAC	1 cut(s)	391
Fnu4HI	GCNGC	8 cut(s)	27, 30, 242, 366, 464, 609, 638, 649
FokI	GGATG	2 cut(s)	74, 206
Fsp4HI	GCNGC	8 cut(s)	27, 30, 242, 366, 464, 609, 638, 649
FspBI	CTAG	1 cut(s)	293
FspI	TGCGCA	1 cut(s)	25
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	8 cut(s)	27, 30, 242, 366, 464, 609, 638, 649
HaeIII	GGCC	1 cut(s)	56
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	5 cut(s)	265, 479, 515, 620, 655
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	4 cut(s)	95, 428, 535, 544
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	3 cut(s)	44, 392, 590
Hpy188I	TCNGA	2 cut(s)	340, 571
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	3 cut(s)	44, 392, 590
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	7 cut(s)	32, 241, 419, 463, 479, 515, 651
HpyF10VI	GCNNNNNNNGC	2 cut(s)	469, 608
HpyF3I	CTNAG	2 cut(s)	540, 570
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	5 cut(s)	265, 479, 515, 620, 655
HspAI	GCGC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	9 cut(s)	43, 70, 147, 175, 190, 217, 372, 552, 570
Lsp1109I	GCAGC	7 cut(s)	16, 38, 253, 377, 475, 595, 635
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	4 cut(s)	197, 322, 412, 507
MboII	GAAGA	2 cut(s)	71, 74
MluCI	AATT	3 cut(s)	87, 120, 552
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	7 cut(s)	19, 46, 145, 308, 434, 550, 654
MseI	TTAA	2 cut(s)	299, 576
MspA1I	CMGCKG	3 cut(s)	29, 386, 637
MspR9I	CCNGG	2 cut(s)	58, 205
MvaI	CCWGG	2 cut(s)	58, 205
MwoI	GCNNNNNNNGC	2 cut(s)	469, 608
NlaIII	CATG	5 cut(s)	265, 479, 515, 620, 655
NmuCI	GTSAC	2 cut(s)	197, 322
NsbI	TGCGCA	1 cut(s)	25
NspI	RCATGY	3 cut(s)	479, 515, 655
NspV	TTCGAA	1 cut(s)	85
PfeI	GAWTC	3 cut(s)	95, 535, 544
PkrI	GCNGC	8 cut(s)	28, 31, 243, 367, 465, 610, 639, 650
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Psp6I	CCWGG	2 cut(s)	56, 203
PspGI	CCWGG	2 cut(s)	56, 203
PvuII	CAGCTG	2 cut(s)	29, 386
RsaI	GTAC	1 cut(s)	591
RsaNI	GTAC	1 cut(s)	590
SaqAI	TTAA	2 cut(s)	299, 576
SatI	GCNGC	8 cut(s)	27, 30, 242, 366, 464, 609, 638, 649
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	2 cut(s)	58, 205
SfaNI	GCATC	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	85
SmlI	CTYRAG	2 cut(s)	359, 425
SmoI	CTYRAG	2 cut(s)	359, 425
Sse9I	AATT	3 cut(s)	87, 120, 552
SsiI	CCGC	1 cut(s)	637
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	56, 203
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	1 cut(s)	16
TaqI	TCGA	3 cut(s)	85, 527, 533
TasI	AATT	3 cut(s)	87, 120, 552
TauI	GCSGC	1 cut(s)	640
TfiI	GAWTC	3 cut(s)	95, 535, 544
Tru1I	TTAA	2 cut(s)	299, 576
Tru9I	TTAA	2 cut(s)	299, 576
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	2 cut(s)	197, 322
TseI	GCWGC	7 cut(s)	26, 29, 241, 365, 463, 608, 648
Tsp45I	GTSAC	2 cut(s)	197, 322
TspDTI	ATGAA	1 cut(s)	605
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	610
XceI	RCATGY	3 cut(s)	479, 515, 655
XmiI	GTMKAC	1 cut(s)	391
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.