Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G77405 |
| fragaria_vesca | FvH4_2g27550 |
| malus_domestica | MD00G1030400.v1.1 |
| prunus_persica | Prupe.1G492400_v2.0.a1 |
| pyrus_communis | pycom15g30800 |
| rosa_chinensis | RchiOBHm_Chr4g0420811 RchiOBHm_Chr4g0420821 |
| rosa_laevigata | RLG00000007736 RLG00000011697 |
| rosa_multiflora | Rmu_co8321563.1_g000001 Rmu_sc0005104.1_g000002 Rmu_sc0006997.1_g000002 Rmu_sc0006997.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00363250 |
| rosa_rugosa | Rorug04G0166200 Rorug04G0166300 Rorug06G0261900 |
| rosa_samantha | Rh4AG227600 Rh4BG230600 Rh4BG230700 Rh4BG230800 Rh4CG242600 Rh4CG242700 Rh6BG381400 |
| rosa_wichuraiana | Rw4G019690 Rw6G032550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 209 |
| AciI | CCGC | 2 cut(s) | 284, 370 |
| AcsI | RAATTY | 2 cut(s) | 226, 511 |
| AfaI | GTAC | 1 cut(s) | 304 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 366 |
| AflIII | ACRYGT | 1 cut(s) | 390 |
| AgsI | TTSAA | 1 cut(s) | 34 |
| AluBI | AGCT | 2 cut(s) | 265, 318 |
| AluI | AGCT | 2 cut(s) | 265, 318 |
| Alw26I | GTCTC | 1 cut(s) | 335 |
| AoxI | GGCC | 3 cut(s) | 36, 237, 357 |
| ApeKI | GCWGC | 1 cut(s) | 140 |
| ApoI | RAATTY | 2 cut(s) | 226, 511 |
| AspA2I | CCTAGG | 1 cut(s) | 106 |
| AspLEI | GCGC | 1 cut(s) | 211 |
| AspS9I | GGNCC | 2 cut(s) | 37, 238 |
| AsuC2I | CCSGG | 3 cut(s) | 177, 241, 270 |
| AsuHPI | GGTGA | 1 cut(s) | 79 |
| AvrII | CCTAGG | 1 cut(s) | 106 |
| BbvI | GCAGC | 1 cut(s) | 127 |
| BccI | CCATC | 2 cut(s) | 92, 253 |
| BciVI | GTATCC | 1 cut(s) | 283 |
| BcnI | CCSGG | 3 cut(s) | 177, 241, 270 |
| BcoDI | GTCTC | 1 cut(s) | 335 |
| BfaI | CTAG | 3 cut(s) | 107, 363, 549 |
| BfmI | CTRYAG | 1 cut(s) | 148 |
| BfuI | GTATCC | 1 cut(s) | 283 |
| BisI | GCNGC | 1 cut(s) | 141 |
| BlnI | CCTAGG | 1 cut(s) | 106 |
| BlsI | GCNGC | 1 cut(s) | 142 |
| Bme1390I | CCNGG | 3 cut(s) | 177, 241, 270 |
| BmgT120I | GGNCC | 2 cut(s) | 37, 238 |
| BmrFI | CCNGG | 3 cut(s) | 177, 241, 270 |
| BmrI | ACTGGG | 1 cut(s) | 354 |
| BmsI | GCATC | 1 cut(s) | 269 |
| BmuI | ACTGGG | 1 cut(s) | 354 |
| BpmI | CTGGAG | 1 cut(s) | 272 |
| BpuMI | CCSGG | 3 cut(s) | 177, 241, 270 |
| BsaJI | CCNNGG | 2 cut(s) | 106, 269 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 366 |
| Bse1I | ACTGG | 1 cut(s) | 349 |
| Bse3DI | GCAATG | 1 cut(s) | 166 |
| BseDI | CCNNGG | 2 cut(s) | 106, 269 |
| BseGI | GGATG | 2 cut(s) | 60, 425 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 366 |
| BseMI | GCAATG | 1 cut(s) | 166 |
| BseNI | ACTGG | 1 cut(s) | 349 |
| BseXI | GCAGC | 1 cut(s) | 127 |
| Bsh1236I | CGCG | 1 cut(s) | 209 |
| BshFI | GGCC | 3 cut(s) | 38, 239, 359 |
| BsiSI | CCGG | 4 cut(s) | 176, 241, 269, 287 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 366 |
| BsmAI | GTCTC | 1 cut(s) | 335 |
| BsnI | GGCC | 3 cut(s) | 38, 239, 359 |
| BspACI | CCGC | 2 cut(s) | 284, 370 |
| BspANI | GGCC | 3 cut(s) | 38, 239, 359 |
| BspFNI | CGCG | 1 cut(s) | 209 |
| BsrDI | GCAATG | 1 cut(s) | 166 |
| BsrI | ACTGG | 1 cut(s) | 349 |
| BssECI | CCNNGG | 2 cut(s) | 106, 269 |
| BssT1I | CCWWGG | 1 cut(s) | 106 |
| Bst4CI | ACNGT | 1 cut(s) | 81 |
| Bst6I | CTCTTC | 1 cut(s) | 108 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 140 |
| BstC8I | GCNNGC | 1 cut(s) | 284 |
| BstDEI | CTNAG | 1 cut(s) | 561 |
| BstF5I | GGATG | 2 cut(s) | 60, 425 |
| BstFNI | CGCG | 1 cut(s) | 209 |
| BstHHI | GCGC | 1 cut(s) | 211 |
| BstMAI | GTCTC | 1 cut(s) | 335 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 140, 262 |
| BstNSI | RCATGY | 1 cut(s) | 394 |
| BstSCI | CCNGG | 3 cut(s) | 175, 239, 268 |
| BstSFI | CTRYAG | 1 cut(s) | 148 |
| BstUI | CGCG | 1 cut(s) | 209 |
| BstV1I | GCAGC | 1 cut(s) | 127 |
| BsuI | GTATCC | 1 cut(s) | 283 |
| BsuRI | GGCC | 3 cut(s) | 38, 239, 359 |
| BtsCI | GGATG | 2 cut(s) | 60, 425 |
| Cac8I | GCNNGC | 1 cut(s) | 284 |
| CfoI | GCGC | 1 cut(s) | 211 |
| Cfr13I | GGNCC | 2 cut(s) | 37, 238 |
| Csp6I | GTAC | 1 cut(s) | 303 |
| CviAII | CATG | 3 cut(s) | 391, 434, 473 |
| CviQI | GTAC | 1 cut(s) | 303 |
| DdeI | CTNAG | 1 cut(s) | 561 |
| Eam1104I | CTCTTC | 1 cut(s) | 108 |
| EarI | CTCTTC | 1 cut(s) | 108 |
| Eco130I | CCWWGG | 1 cut(s) | 106 |
| EcoO109I | RGGNCCY | 1 cut(s) | 37 |
| EcoT14I | CCWWGG | 1 cut(s) | 106 |
| ErhI | CCWWGG | 1 cut(s) | 106 |
| FaeI | CATG | 3 cut(s) | 394, 437, 476 |
| FatI | CATG | 3 cut(s) | 390, 433, 472 |
| FauI | CCCGC | 1 cut(s) | 291 |
| Fnu4HI | GCNGC | 1 cut(s) | 141 |
| FokI | GGATG | 2 cut(s) | 47, 432 |
| Fsp4HI | GCNGC | 1 cut(s) | 141 |
| FspBI | CTAG | 3 cut(s) | 107, 363, 549 |
| GlaI | GCGC | 1 cut(s) | 210 |
| GluI | GCNGC | 1 cut(s) | 141 |
| GsuI | CTGGAG | 1 cut(s) | 272 |
| HaeIII | GGCC | 3 cut(s) | 38, 239, 359 |
| HapII | CCGG | 4 cut(s) | 176, 241, 269, 287 |
| HhaI | GCGC | 1 cut(s) | 211 |
| Hin1II | CATG | 3 cut(s) | 394, 437, 476 |
| Hin6I | GCGC | 1 cut(s) | 209 |
| HinP1I | GCGC | 1 cut(s) | 209 |
| HinfI | GANTC | 1 cut(s) | 25 |
| HpaII | CCGG | 4 cut(s) | 176, 241, 269, 287 |
| HphI | GGTGA | 1 cut(s) | 79 |
| Hpy188I | TCNGA | 1 cut(s) | 399 |
| HpyAV | CCTTC | 5 cut(s) | 28, 229, 349, 410, 486 |
| HpyCH4III | ACNGT | 1 cut(s) | 81 |
| HpyCH4V | TGCA | 2 cut(s) | 171, 216 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 140, 262 |
| HpyF3I | CTNAG | 1 cut(s) | 561 |
| Hsp92II | CATG | 3 cut(s) | 394, 437, 476 |
| HspAI | GCGC | 1 cut(s) | 209 |
| LmnI | GCTCC | 2 cut(s) | 253, 262 |
| LpnPI | CCDG | 8 cut(s) | 28, 189, 236, 254, 282, 300, 330, 474 |
| Lsp1109I | GCAGC | 1 cut(s) | 127 |
| LweI | GCATC | 1 cut(s) | 269 |
| MaeI | CTAG | 3 cut(s) | 107, 363, 549 |
| MaeIII | GTNAC | 2 cut(s) | 70, 496 |
| MboII | GAAGA | 1 cut(s) | 125 |
| MluCI | AATT | 2 cut(s) | 226, 511 |
| MnlI | CCTC | 7 cut(s) | 50, 75, 109, 360, 406, 419, 478 |
| MseI | TTAA | 2 cut(s) | 126, 231 |
| MspI | CCGG | 4 cut(s) | 176, 241, 269, 287 |
| MspR9I | CCNGG | 3 cut(s) | 177, 241, 270 |
| MvnI | CGCG | 1 cut(s) | 209 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 140, 262 |
| NciI | CCSGG | 3 cut(s) | 177, 241, 270 |
| NlaIII | CATG | 3 cut(s) | 394, 437, 476 |
| NspI | RCATGY | 1 cut(s) | 394 |
| PciI | ACATGT | 1 cut(s) | 390 |
| PfeI | GAWTC | 1 cut(s) | 25 |
| PflFI | GACNNNGTC | 1 cut(s) | 79 |
| PkrI | GCNGC | 1 cut(s) | 142 |
| PscI | ACATGT | 1 cut(s) | 390 |
| PspPI | GGNCC | 2 cut(s) | 37, 238 |
| PsyI | GACNNNGTC | 1 cut(s) | 79 |
| RsaI | GTAC | 1 cut(s) | 304 |
| RsaNI | GTAC | 1 cut(s) | 303 |
| SaqAI | TTAA | 2 cut(s) | 126, 231 |
| SatI | GCNGC | 1 cut(s) | 141 |
| Sau96I | GGNCC | 2 cut(s) | 37, 238 |
| ScrFI | CCNGG | 3 cut(s) | 177, 241, 270 |
| SetI | ASST | 4 cut(s) | 92, 267, 320, 550 |
| SfaNI | GCATC | 1 cut(s) | 269 |
| SfcI | CTRYAG | 1 cut(s) | 148 |
| Sse9I | AATT | 2 cut(s) | 226, 511 |
| SsiI | CCGC | 2 cut(s) | 284, 370 |
| SspMI | CTAG | 3 cut(s) | 107, 363, 549 |
| StyD4I | CCNGG | 3 cut(s) | 175, 239, 268 |
| StyI | CCWWGG | 1 cut(s) | 106 |
| TaaI | ACNGT | 1 cut(s) | 81 |
| TaqI | TCGA | 1 cut(s) | 449 |
| TasI | AATT | 2 cut(s) | 226, 511 |
| TfiI | GAWTC | 1 cut(s) | 25 |
| Tru1I | TTAA | 2 cut(s) | 126, 231 |
| Tru9I | TTAA | 2 cut(s) | 126, 231 |
| TseI | GCWGC | 1 cut(s) | 140 |
| TspDTI | ATGAA | 6 cut(s) | 113, 144, 155, 170, 444, 461 |
| Tth111I | GACNNNGTC | 1 cut(s) | 79 |
| XapI | RAATTY | 2 cut(s) | 226, 511 |
| XceI | RCATGY | 1 cut(s) | 394 |
| XmaJI | CCTAGG | 1 cut(s) | 106 |
| XspI | CTAG | 3 cut(s) | 107, 363, 549 |