Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Reverse (-)

21973404 .. 21974283

Gene Structure 880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGGAAAACACAAGAAGGGAGAGTTAACGGGGAGGATCGAATAAGTGAGCTCCCCGACGAGATCATAGCAACCATTCTTTCTCGATTGAGCAGTAAGTACGCAACAAGAACTTGTCTTCTCTCTAAGAGGTGGAGATATCTGTGGACACAAGTTAGATGTCTCAACTTTGATATTCCGCCGGCGGGTTGGAAAAGCTATTGTTGGATTTGTTGCCAGCGAACTGGAGAAGAATGCGAGCATGGTGTAAAATTCAAGTCGGTTACTCAATTCTTCAGATTGCATCAGGGAACTCTAGATCGAATCACAATGTCAGTCTCTCCCACTGGATACTATGGGACGCTTTGCCGAGAAACTCTTTCGAAAATAATCCCTGCTTGGATCGAATTGGTAGTGCCGAAGAGAGTTCAGAGTCTAGAGATAGACTTGTATAACTGTGGACACTATGAATATGATCAGGTATATCTGCTGGAGCCATTTCAAAGCCCTCTTGGTGTTTCATGCATCAAGTACCTTAAGCAGCTCTCTTTGAAAGGCCCTGGAATAAGAGGTGAAATTGTTGAGCACTTTCTATCCAACAGCCCTCTACTTGAGCACCTAAGTATTTCTGGCTCGACAAACTTGAAAGTTTTCGGTTCTTCATCCTTGAAGTTCCTGCAGATAAGTGATTGTGAATTTCTAGATCCTCAAGTCGAGATTTCTGCTCCTAATCTTGTATCATTTGTCTACAGTGGAATTTCAGGGGCGTATCCGATTCTGAATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

256

Amino Acids

28.93

Weight (kDa)

7.53

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 54	1e-08	F-box domain
LRR_At1g61320_AtMIF1	PF23622	160 - 245	5.7e-09	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	726
AciI	CCGC	2 cut(s)	179, 185
AclWI	GGATC	3 cut(s)	45, 389, 677
AcsI	RAATTY	3 cut(s)	251, 674, 735
AcuI	CTGAAG	1 cut(s)	259
AfaI	GTAC	2 cut(s)	101, 512
AfiI	CCNNNNNNNGG	1 cut(s)	185
AflII	CTTAAG	1 cut(s)	515
AgsI	TTSAA	5 cut(s)	256, 482, 532, 625, 649
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	3 cut(s)	52, 198, 523
AluI	AGCT	3 cut(s)	52, 198, 523
Alw21I	GWGCWC	3 cut(s)	54, 567, 597
Alw26I	GTCTC	2 cut(s)	167, 322
AlwI	GGATC	3 cut(s)	45, 389, 677
AoxI	GGCC	1 cut(s)	535
ApeKI	GCWGC	1 cut(s)	520
ApoI	RAATTY	3 cut(s)	251, 674, 735
Asp700I	GAANNNNTTC	1 cut(s)	629
AspS9I	GGNCC	1 cut(s)	536
AsuHPI	GGTGA	1 cut(s)	563
AsuII	TTCGAA	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	3 cut(s)	54, 567, 597
BbvI	GCAGC	1 cut(s)	532
BcgI	CGANNNNNNTGC	2 cut(s)	683, 717
BciT130I	CCWGG	1 cut(s)	540
BciVI	GTATCC	2 cut(s)	323, 759
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	2 cut(s)	167, 322
BfaI	CTAG	3 cut(s)	296, 416, 680
BfmI	CTRYAG	2 cut(s)	656, 727
BfrI	CTTAAG	1 cut(s)	515
BfuI	GTATCC	2 cut(s)	323, 759
BisI	GCNGC	1 cut(s)	521
BlsI	GCNGC	1 cut(s)	522
Bme1390I	CCNGG	1 cut(s)	540
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	1 cut(s)	540
BmsI	GCATC	2 cut(s)	292, 513
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	2 cut(s)	246, 491
Bpu14I	TTCGAA	1 cut(s)	362
BpuEI	CTTGAG	2 cut(s)	611, 672
BsaJI	CCNNGG	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	229, 331
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	538
BseGI	GGATG	1 cut(s)	641
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	229, 331
BseXI	GCAGC	1 cut(s)	532
BshFI	GGCC	1 cut(s)	537
BsiHKAI	GWGCWC	3 cut(s)	54, 567, 597
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	167, 322
BsmFI	GGGAC	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	537
Bsp119I	TTCGAA	1 cut(s)	362
Bsp1286I	GDGCHC	3 cut(s)	54, 567, 597
Bsp143I	GATC	6 cut(s)	37, 63, 298, 381, 454, 682
BspACI	CCGC	2 cut(s)	179, 185
BspANI	GGCC	1 cut(s)	537
BspLI	GGNNCC	1 cut(s)	474
BspMAI	CTGCAG	1 cut(s)	660
BspPI	GGATC	3 cut(s)	45, 389, 677
BspT104I	TTCGAA	1 cut(s)	362
BspTI	CTTAAG	1 cut(s)	515
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	229, 331
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	6 cut(s)	37, 63, 298, 381, 454, 682
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	2 cut(s)	437, 731
Bst6I	CTCTTC	1 cut(s)	395
BstAFI	CTTAAG	1 cut(s)	515
BstBI	TTCGAA	1 cut(s)	362
BstC8I	GCNNGC	3 cut(s)	183, 218, 239
BstDEI	CTNAG	2 cut(s)	126, 599
BstF5I	GGATG	1 cut(s)	641
BstKTI	GATC	6 cut(s)	40, 66, 301, 384, 457, 685
BstMAI	GTCTC	2 cut(s)	167, 322
BstMBI	GATC	6 cut(s)	37, 63, 298, 381, 454, 682
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	2 cut(s)	656, 727
BstV1I	GCAGC	1 cut(s)	532
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	682
BstXI	CCANNNNNNTGG	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	682
BsuI	GTATCC	2 cut(s)	323, 759
BsuRI	GGCC	1 cut(s)	537
BtsCI	GGATG	1 cut(s)	641
BtsIMutI	CAGTG	2 cut(s)	324, 736
Cac8I	GCNNGC	3 cut(s)	183, 218, 239
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	536
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	100, 511
CviAII	CATG	2 cut(s)	242, 501
CviJI	RGCY	8 cut(s)	52, 198, 475, 486, 523, 537, 582, 612
CviKI_1	RGCY	8 cut(s)	52, 198, 475, 486, 523, 537, 582, 612
CviQI	GTAC	2 cut(s)	100, 511
DdeI	CTNAG	2 cut(s)	126, 599
DpnI	GATC	6 cut(s)	39, 65, 300, 383, 456, 684
DpnII	GATC	6 cut(s)	37, 63, 298, 381, 454, 682
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
EciI	GGCGGA	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	54
Eco32I	GATATC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	538
EcoRV	GATATC	1 cut(s)	140
EcoT22I	ATGCAT	1 cut(s)	506
EcoT38I	GRGCYC	1 cut(s)	54
FaeI	CATG	2 cut(s)	245, 504
FaiI	YATR	8 cut(s)	68, 243, 336, 432, 447, 453, 463, 502
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	2 cut(s)	241, 500
FauI	CCCGC	1 cut(s)	178
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	1 cut(s)	521
FokI	GGATG	1 cut(s)	628
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	521
FspBI	CTAG	3 cut(s)	296, 416, 680
GluI	GCNGC	1 cut(s)	521
GsuI	CTGGAG	2 cut(s)	246, 491
HaeIII	GGCC	1 cut(s)	537
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	349
Hin1II	CATG	2 cut(s)	245, 504
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	4 cut(s)	303, 412, 754, 760
HpaI	GTTAAC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	4 cut(s)	28, 147, 440, 727
Hpy188I	TCNGA	4 cut(s)	278, 411, 753, 759
Hpy188III	TCNNGA	5 cut(s)	84, 296, 416, 680, 694
Hpy8I	GTNNAC	4 cut(s)	28, 147, 440, 727
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	2 cut(s)	437, 731
HpyCH4V	TGCA	3 cut(s)	283, 504, 658
HpyF3I	CTNAG	2 cut(s)	126, 599
Hsp92II	CATG	2 cut(s)	245, 504
KroI	GCCGGC	1 cut(s)	181
KroNI	GCCGGC	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	454
KspAI	GTTAAC	1 cut(s)	28
Kzo9I	GATC	6 cut(s)	37, 63, 298, 381, 454, 682
LmnI	GCTCC	3 cut(s)	57, 472, 709
Lsp1109I	GCAGC	1 cut(s)	532
LweI	GCATC	2 cut(s)	292, 513
MaeI	CTAG	3 cut(s)	296, 416, 680
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	6 cut(s)	39, 65, 300, 383, 456, 684
MboI	GATC	6 cut(s)	37, 63, 298, 381, 454, 682
MboII	GAAGA	5 cut(s)	110, 242, 265, 412, 630
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	3 cut(s)	54, 567, 597
MluCI	AATT	6 cut(s)	251, 269, 386, 555, 674, 735
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	3 cut(s)	170, 185, 600
MnlI	CCTC	6 cut(s)	28, 123, 498, 542, 594, 696
Mph1103I	ATGCAT	1 cut(s)	506
MreI	CGCCGGCG	1 cut(s)	181
MroNI	GCCGGC	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	629
MseI	TTAA	2 cut(s)	27, 516
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	540
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	540
NaeI	GCCGGC	1 cut(s)	183
NdeII	GATC	6 cut(s)	37, 63, 298, 381, 454, 682
NgoMIV	GCCGGC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	245, 504
NlaIV	GGNNCC	1 cut(s)	474
NmeAIII	GCCGAG	1 cut(s)	374
NsiI	ATGCAT	1 cut(s)	506
NspV	TTCGAA	1 cut(s)	362
PctI	GAATGC	1 cut(s)	239
PdiI	GCCGGC	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	629
PfeI	GAWTC	3 cut(s)	303, 754, 760
PkrI	GCNGC	1 cut(s)	522
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	536
PstI	CTGCAG	1 cut(s)	660
PsuI	RGATCY	1 cut(s)	682
RsaI	GTAC	2 cut(s)	101, 512
RsaNI	GTAC	2 cut(s)	100, 511
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	27, 516
SatI	GCNGC	1 cut(s)	521
Sau3AI	GATC	6 cut(s)	37, 63, 298, 381, 454, 682
Sau96I	GGNCC	1 cut(s)	536
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	3 cut(s)	54, 567, 597
SetI	ASST	8 cut(s)	54, 134, 200, 462, 516, 525, 553, 600
SfaNI	GCATC	2 cut(s)	292, 513
SfcI	CTRYAG	2 cut(s)	656, 727
SfuI	TTCGAA	1 cut(s)	362
SgrAI	CRCCGGYG	1 cut(s)	181
SmlI	CTYRAG	3 cut(s)	515, 590, 687
SmoI	CTYRAG	3 cut(s)	515, 590, 687
Sse9I	AATT	6 cut(s)	251, 269, 386, 555, 674, 735
SsiI	CCGC	2 cut(s)	179, 185
SspMI	CTAG	3 cut(s)	296, 416, 680
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	538
TaaI	ACNGT	2 cut(s)	437, 731
TaqI	TCGA	7 cut(s)	40, 85, 301, 362, 384, 614, 693
TasI	AATT	6 cut(s)	251, 269, 386, 555, 674, 735
TfiI	GAWTC	3 cut(s)	303, 754, 760
Tru1I	TTAA	2 cut(s)	27, 516
Tru9I	TTAA	2 cut(s)	27, 516
TscAI	CASTG	2 cut(s)	331, 736
TseI	GCWGC	1 cut(s)	520
TspDTI	ATGAA	3 cut(s)	462, 489, 630
TspRI	CASTG	2 cut(s)	331, 736
Vha464I	CTTAAG	1 cut(s)	515
XapI	RAATTY	3 cut(s)	251, 674, 735
XbaI	TCTAGA	3 cut(s)	295, 415, 679
XmiI	GTMKAC	1 cut(s)	726
XmnI	GAANNNNTTC	1 cut(s)	629
XspI	CTAG	3 cut(s)	296, 416, 680
Zsp2I	ATGCAT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.