MD02G1120400.v1.1

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
9831121 .. 9838729
7609 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1120400.v1.1.491

Sequence Viewer

Length: 1566 bp
ATGGAAGAAGGTTCGATGGAAATTCCAACTGCTTCAACATATGATAAAAAACAAGATAAAGCTCCAATGAATTTGGGTGATAAGGGAGAAACAAGTAATCCGTTGGAGGATCGGATTAGTCAACTGCCTGATGCGATTCTGGTTGACATCATTTCCCCGTTGAGGATTAAGGAAGTAGCAAGGACTAGTGTCCTCTCTAAGAGGTGGAGATATTTGTGGACACATGTTACACGTCTCAACTTTGATCATCATGATGGTGAACATCCACGTACCTCCACAAGGACCACAACAGTTAATCCGTCAGAGAGACGTCGTCTAGAAGAAGCGACCAACAGAAGACAACGAATCCGGCAATCGCACCAGGGTTTAACACCTTTAAACTTGGGTGAATGCAGAGGTGGTTCTTCCTCAGCGGGTTCCGGTTCAAGATCTAGGCACCCCGATGGAATTTCAAGACTAATTCGCCCACCATCACCACCACCGTGTACGGTGGTGACTAAAGTCCTGCAATCGCATCAGGGTCCAACCGTAGATGGAGTCAGAATTTGTGGATCTTGTTATAGCTCGGATAATGTCGATGATTTTATCGAATTTGCAATTCAAAAGAAAGTTCAAAGGCTTGAGATAGACAAATCGAAAGAAAAAGACACCAAGTCTTGGGAGAAGCCTTTCAACAACCCTTTAGGTGTTTCACGCATTAAGTCCCTTAGACACCTCTCTTTAAAGTACATACCTATAACTGATGAAGTTGTTGGGCTGGTTCTATCCGAATGTCAACTTCTTGAACACCTCAGTATTTGTCACTCAAGCGATCTTTATGCTGTGAAAGCAGTTGGTTCATCACTCCGGTTGAAGTTCCTACAAATAAGTTATTGCGGTGGCATAGTCAGAATTGATATTTCTGCCCCTAATCTTGTGTCATTTATATATCGCGGACAAAATGTGTACAGAAGAGGAATTGTTTTGAAACATGCACCCAAGCTTGTCTACGTATCTCTCTCAGAAGACGAACCTGATAGCATTACCAAACATCTTCTGTCGATATCAGCTCGACTTTCATACCTTCAGACTCTCCACCTGTGGATGAATCTGAGAAGGACAAATGTTATGCTCCCACAATTTCCCGAATTAACTAGTCTCAAAGACTTGTCGTTGACTGTACATGCCAAAAATTATGGTCCAAGTCTCCTGGATATGACTTCCTTGTTAGAGCAATCTCCCTTCTTGCAGAGATTAACATTCCAGTTACAATGGGGATATGTTCGCGAGGGTTATACGAGAAATATGCAGGAGATTAAAAGATGTCCTCATCAATGCCTTAAGGTGGTGAGATTTTCTGGGTTCATTGGGATGGGCGGGTCAATTATCGATACGGAGTTTGCCATGTATCTGGTGGAAAATGCTGTGGTACTTGAAAAGTTTATCATAGAACTTGAAAAGGTCGAATTAGCTTATATACTGCCAGAGTTTGCTACAACGGAGGAGAAATTAGAAGCAACAAAGGAGCATGCTTTGCAGCTAATTGGAACACAATTACCACCAGGAGCTGAGTTGTTTATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

522

Amino Acids

58.94

Weight (kDa)

8.79

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 39 - 76 2.7e-06 F-box domain
LRR_At5g56370 PF24758 217 - 331 3.2e-07 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 224 - 478 8.4e-22 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 435
AccB7I CCANNNNNTGG 1 cut(s) 657
AccI GTMKAC 1 cut(s) 987
AccII CGCG 2 cut(s) 933, 1266
AciI CCGC 4 cut(s) 413, 876, 933, 1356
AclWI GGATC 2 cut(s) 117, 559
AcsI RAATTY 5 cut(s) 21, 70, 447, 543, 590
AcuI CTGAAG 1 cut(s) 1049
AcyI GRCGYC 1 cut(s) 310
AfaI GTAC 6 cut(s) 271, 487, 728, 947, 1161, 1410
AfiI CCNNNNNNNGG 4 cut(s) 162, 279, 657, 1324
AflII CTTAAG 1 cut(s) 1319
AflIII ACRYGT 2 cut(s) 223, 230
AhdI GACNNNNNGTC 1 cut(s) 652
AhlI ACTAGT 2 cut(s) 185, 1133
AjiI CACGTC 1 cut(s) 233
AjnI CCWGG 3 cut(s) 360, 1188, 1540
AleI CACNNNNGTG 1 cut(s) 481
AluBI AGCT 7 cut(s) 62, 564, 982, 1049, 1451, 1519, 1547
AluI AGCT 7 cut(s) 62, 564, 982, 1049, 1451, 1519, 1547
Alw26I GTCTC 4 cut(s) 239, 301, 1142, 1190
AlwI GGATC 2 cut(s) 117, 559
AlwNI CAGNNNCTG 1 cut(s) 1547
ApeKI GCWGC 1 cut(s) 1516
ApoI RAATTY 5 cut(s) 21, 70, 447, 543, 590
Asp700I GAANNNNTTC 1 cut(s) 668
AspS9I GGNCC 3 cut(s) 282, 521, 1178
AsuHPI GGTGA 6 cut(s) 89, 269, 398, 465, 505, 1339
AvaII GGWCC 3 cut(s) 282, 521, 1178
BanI GGYRCC 1 cut(s) 435
BbsI GAAGAC 2 cut(s) 343, 1011
BbvCI CCTCAGC 1 cut(s) 409
BbvI GCAGC 1 cut(s) 1528
BccI CCATC 6 cut(s) 10, 248, 437, 478, 527, 1345
BcgI CGANNNNNNTGC 4 cut(s) 800, 834, 1267, 1301
BciT130I CCWGG 3 cut(s) 362, 1190, 1542
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 4 cut(s) 239, 301, 1142, 1190
BcuI ACTAGT 2 cut(s) 185, 1133
BfaI CTAG 4 cut(s) 186, 317, 432, 1134
BfrI CTTAAG 1 cut(s) 1319
BglII AGATCT 1 cut(s) 428
BisI GCNGC 1 cut(s) 1517
BlsI GCNGC 1 cut(s) 1518
Bme1390I CCNGG 3 cut(s) 362, 1190, 1542
Bme18I GGWCC 3 cut(s) 282, 521, 1178
BmeRI GACNNNNNGTC 1 cut(s) 652
BmgBI CACGTC 1 cut(s) 233
BmgT120I GGNCC 3 cut(s) 282, 521, 1178
BmiI GGNNCC 3 cut(s) 418, 437, 522
BmrFI CCNGG 3 cut(s) 362, 1190, 1542
BmsI GCATC 2 cut(s) 121, 523
BoxI GACNNNNGTC 2 cut(s) 188, 500
BpiI GAAGAC 2 cut(s) 343, 1011
Bpu10I CCTNAGC 1 cut(s) 409
BpuEI CTTGAG 2 cut(s) 641, 790
Bsa29I ATCGAT 1 cut(s) 1368
BsaAI YACGTR 2 cut(s) 269, 991
BsaHI GRCGYC 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 2 cut(s) 419, 846
Bsc4I CCNNNNNNNGG 4 cut(s) 162, 279, 657, 1324
Bse1I ACTGG 1 cut(s) 1243
BseBI CCWGG 3 cut(s) 362, 1190, 1542
BseCI ATCGAT 1 cut(s) 1368
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 3 cut(s) 262, 1089, 1356
BseLI CCNNNNNNNGG 4 cut(s) 162, 279, 657, 1324
BseMII CTCAG 5 cut(s) 423, 805, 1014, 1082, 1539
BseNI ACTGG 1 cut(s) 1243
BseRI GAGGAG 1 cut(s) 1496
BseXI GCAGC 1 cut(s) 1528
Bsh1236I CGCG 2 cut(s) 933, 1266
BshNI GGYRCC 1 cut(s) 435
BshVI ATCGAT 1 cut(s) 1368
BsiSI CCGG 3 cut(s) 349, 420, 847
BslFI GGGAC 1 cut(s) 688
BslI CCNNNNNNNGG 4 cut(s) 162, 279, 657, 1324
BsmAI GTCTC 4 cut(s) 239, 301, 1142, 1190
BsmBI CGTCTC 2 cut(s) 239, 301
BsmFI GGGAC 1 cut(s) 688
BsmI GAATGC 1 cut(s) 395
Bsp1407I TGTACA 2 cut(s) 945, 1159
Bsp143I GATC 5 cut(s) 109, 244, 428, 551, 811
Bsp68I TCGCGA 1 cut(s) 1266
BspACI CCGC 4 cut(s) 413, 876, 933, 1356
BspCNI CTCAG 5 cut(s) 422, 804, 1013, 1083, 1540
BspDI ATCGAT 1 cut(s) 1368
BspFNI CGCG 2 cut(s) 933, 1266
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 3 cut(s) 418, 437, 522
BspPI GGATC 2 cut(s) 117, 559
BspT107I GGYRCC 1 cut(s) 435
BspTI CTTAAG 1 cut(s) 1319
BsrGI TGTACA 2 cut(s) 945, 1159
BsrI ACTGG 1 cut(s) 1243
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 5 cut(s) 109, 244, 428, 551, 811
BssNI GRCGYC 1 cut(s) 310
Bst2UI CCWGG 3 cut(s) 362, 1190, 1542
Bst4CI ACNGT 5 cut(s) 292, 483, 490, 529, 1159
Bst6I CTCTTC 1 cut(s) 946
BstACI GRCGYC 1 cut(s) 310
BstAFI CTTAAG 1 cut(s) 1319
BstAPI GCANNNNNTGC 1 cut(s) 1513
BstAUI TGTACA 2 cut(s) 945, 1159
BstBAI YACGTR 2 cut(s) 269, 991
BstC8I GCNNGC 1 cut(s) 1509
BstDEI CTNAG 7 cut(s) 198, 409, 707, 791, 1000, 1091, 1548
BstENI CCTNNNNNAGG 1 cut(s) 277
BstF5I GGATG 3 cut(s) 262, 1089, 1356
BstFNI CGCG 2 cut(s) 933, 1266
BstKTI GATC 5 cut(s) 112, 247, 431, 554, 814
BstMAI GTCTC 4 cut(s) 239, 301, 1142, 1190
BstMBI GATC 5 cut(s) 109, 244, 428, 551, 811
BstMWI GCNNNNNNNGC 2 cut(s) 827, 1513
BstNI CCWGG 3 cut(s) 362, 1190, 1542
BstNSI RCATGY 4 cut(s) 227, 974, 1166, 1511
BstPAI GACNNNNGTC 2 cut(s) 188, 500
BstSCI CCNGG 3 cut(s) 360, 1188, 1540
BstSNI TACGTA 1 cut(s) 991
BstUI CGCG 2 cut(s) 933, 1266
BstV1I GCAGC 1 cut(s) 1528
BstV2I GAAGAC 2 cut(s) 343, 1011
BstX2I RGATCY 2 cut(s) 428, 551
BstXI CCANNNNNNTGG 1 cut(s) 1390
BstYI RGATCY 2 cut(s) 428, 551
Bsu15I ATCGAT 1 cut(s) 1368
BsuTUI ATCGAT 1 cut(s) 1368
BtrI CACGTC 1 cut(s) 233
BtsCI GGATG 3 cut(s) 262, 1089, 1356
BtuMI TCGCGA 1 cut(s) 1266
Cac8I GCNNGC 1 cut(s) 1509
CaiI CAGNNNCTG 1 cut(s) 1547
CciI TCATGA 1 cut(s) 250
Cfr13I GGNCC 3 cut(s) 282, 521, 1178
ClaI ATCGAT 1 cut(s) 1368
Csp6I GTAC 6 cut(s) 270, 486, 727, 946, 1160, 1409
CviAII CATG 6 cut(s) 224, 251, 971, 1163, 1384, 1508
CviQI GTAC 6 cut(s) 270, 486, 727, 946, 1160, 1409
DdeI CTNAG 7 cut(s) 198, 409, 707, 791, 1000, 1091, 1548
DpnI GATC 5 cut(s) 111, 246, 430, 553, 813
DpnII GATC 5 cut(s) 109, 244, 428, 551, 811
DraI TTTAAA 2 cut(s) 378, 723
DriI GACNNNNNGTC 1 cut(s) 652
Eam1104I CTCTTC 1 cut(s) 946
Eam1105I GACNNNNNGTC 1 cut(s) 652
EarI CTCTTC 1 cut(s) 946
Eco105I TACGTA 1 cut(s) 991
Eco32I GATATC 1 cut(s) 1044
Eco47I GGWCC 3 cut(s) 282, 521, 1178
Eco57I CTGAAG 1 cut(s) 1049
EcoNI CCTNNNNNAGG 1 cut(s) 277
EcoRII CCWGG 3 cut(s) 360, 1188, 1540
EcoRV GATATC 1 cut(s) 1044
Esp3I CGTCTC 2 cut(s) 239, 301
FaeI CATG 6 cut(s) 227, 254, 974, 1166, 1387, 1511
FaqI GGGAC 1 cut(s) 688
FatI CATG 6 cut(s) 223, 250, 970, 1162, 1383, 1507
FauI CCCGC 2 cut(s) 406, 1349
FauNDI CATATG 1 cut(s) 40
FbaI TGATCA 1 cut(s) 244
FblI GTMKAC 1 cut(s) 987
Fnu4HI GCNGC 1 cut(s) 1517
FokI GGATG 3 cut(s) 249, 1096, 1363
Fsp4HI GCNGC 1 cut(s) 1517
FspBI CTAG 4 cut(s) 186, 317, 432, 1134
GluI GCNGC 1 cut(s) 1517
HapII CCGG 3 cut(s) 349, 420, 847
Hin1I GRCGYC 1 cut(s) 310
Hin1II CATG 6 cut(s) 227, 254, 974, 1166, 1387, 1511
HincII GTYRAC 4 cut(s) 122, 145, 776, 1155
HindII GTYRAC 4 cut(s) 122, 145, 776, 1155
HindIII AAGCTT 1 cut(s) 980
HinfI GANTC 5 cut(s) 136, 345, 537, 1069, 1087
HpaII CCGG 3 cut(s) 349, 420, 847
HphI GGTGA 6 cut(s) 89, 269, 398, 465, 505, 1339
Hpy166II GTNNAC 9 cut(s) 122, 145, 219, 260, 486, 776, 946, 988, 1155
Hpy188I TCNGA 9 cut(s) 114, 304, 542, 568, 769, 890, 1003, 1068, 1092
Hpy188III TCNNGA 7 cut(s) 251, 317, 426, 453, 782, 1124, 1265
Hpy8I GTNNAC 9 cut(s) 122, 145, 219, 260, 486, 776, 946, 988, 1155
Hpy99I CGWCG 1 cut(s) 315
HpyAV CCTTC 3 cut(s) 1073, 1089, 1231
HpyCH4III ACNGT 5 cut(s) 292, 483, 490, 529, 1159
HpyCH4IV ACGT 4 cut(s) 232, 268, 310, 990
HpyCH4V TGCA 7 cut(s) 393, 508, 596, 974, 1228, 1288, 1516
HpyF10VI GCNNNNNNNGC 2 cut(s) 827, 1513
HpyF3I CTNAG 7 cut(s) 198, 409, 707, 791, 1000, 1091, 1548
HpySE526I ACGT 4 cut(s) 232, 268, 310, 990
Hsp92I GRCGYC 1 cut(s) 310
Hsp92II CATG 6 cut(s) 227, 254, 974, 1166, 1387, 1511
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 5 cut(s) 109, 244, 428, 551, 811
LmnI GCTCC 4 cut(s) 67, 1116, 1504, 1544
Lsp1109I GCAGC 1 cut(s) 1528
LweI GCATC 2 cut(s) 121, 523
MaeI CTAG 4 cut(s) 186, 317, 432, 1134
MaeII ACGT 4 cut(s) 232, 268, 310, 990
MaeIII GTNAC 4 cut(s) 226, 493, 800, 1245
MalI GATC 5 cut(s) 111, 246, 430, 553, 813
MboI GATC 5 cut(s) 109, 244, 428, 551, 811
MboII GAAGA 7 cut(s) 17, 332, 348, 396, 963, 1016, 1025
MflI RGATCY 2 cut(s) 428, 551
MlyI GAGTC 2 cut(s) 546, 1063
MmeI TCCRAC 3 cut(s) 50, 84, 548
MroXI GAANNNNTTC 1 cut(s) 668
MslI CAYNNNNRTG 5 cut(s) 252, 255, 441, 481, 1349
MspA1I CMGCKG 1 cut(s) 413
MspCI CTTAAG 1 cut(s) 1319
MspI CCGG 3 cut(s) 349, 420, 847
MspR9I CCNGG 3 cut(s) 362, 1190, 1542
Mva1269I GAATGC 1 cut(s) 395
MvaI CCWGG 3 cut(s) 362, 1190, 1542
MvnI CGCG 2 cut(s) 933, 1266
MwoI GCNNNNNNNGC 2 cut(s) 827, 1513
NdeI CATATG 1 cut(s) 40
NdeII GATC 5 cut(s) 109, 244, 428, 551, 811
NlaIII CATG 6 cut(s) 227, 254, 974, 1166, 1387, 1511
NlaIV GGNNCC 3 cut(s) 418, 437, 522
NmuCI GTSAC 2 cut(s) 493, 800
NruI TCGCGA 1 cut(s) 1266
NspI RCATGY 4 cut(s) 227, 974, 1166, 1511
OliI CACNNNNGTG 1 cut(s) 481
PaeI GCATGC 1 cut(s) 1511
PagI TCATGA 1 cut(s) 250
PciI ACATGT 1 cut(s) 223
PctI GAATGC 1 cut(s) 395
PdmI GAANNNNTTC 1 cut(s) 668
PfeI GAWTC 3 cut(s) 136, 345, 1087
PflFI GACNNNGTC 1 cut(s) 312
PflMI CCANNNNNTGG 1 cut(s) 657
PfoI TCCNGGA 1 cut(s) 1188
PkrI GCNGC 1 cut(s) 1518
PleI GAGTC 2 cut(s) 545, 1063
PpsI GAGTC 2 cut(s) 545, 1063
Ppu21I YACGTR 2 cut(s) 269, 991
PscI ACATGT 1 cut(s) 223
PshAI GACNNNNGTC 2 cut(s) 188, 500
Psp6I CCWGG 3 cut(s) 360, 1188, 1540
PspGI CCWGG 3 cut(s) 360, 1188, 1540
PspN4I GGNNCC 3 cut(s) 418, 437, 522
PspPI GGNCC 3 cut(s) 282, 521, 1178
PstNI CAGNNNCTG 1 cut(s) 1547
PsuI RGATCY 2 cut(s) 428, 551
PsyI GACNNNGTC 1 cut(s) 312
RruI TCGCGA 1 cut(s) 1266
RsaI GTAC 6 cut(s) 271, 487, 728, 947, 1161, 1410
RsaNI GTAC 6 cut(s) 270, 486, 727, 946, 1160, 1409
RseI CAYNNNNRTG 5 cut(s) 252, 255, 441, 481, 1349
SatI GCNGC 1 cut(s) 1517
Sau3AI GATC 5 cut(s) 109, 244, 428, 551, 811
Sau96I GGNCC 3 cut(s) 282, 521, 1178
SchI GAGTC 2 cut(s) 546, 1063
ScrFI CCNGG 3 cut(s) 362, 1190, 1542
SfaNI GCATC 2 cut(s) 121, 523
SinI GGWCC 3 cut(s) 282, 521, 1178
SmiMI CAYNNNNRTG 5 cut(s) 252, 255, 441, 481, 1349
SmlI CTYRAG 3 cut(s) 620, 805, 1319
SmoI CTYRAG 3 cut(s) 620, 805, 1319
SnaBI TACGTA 1 cut(s) 991
SpeI ACTAGT 2 cut(s) 185, 1133
SphI GCATGC 1 cut(s) 1511
SsiI CCGC 4 cut(s) 413, 876, 933, 1356
SspMI CTAG 4 cut(s) 186, 317, 432, 1134
StyD4I CCNGG 3 cut(s) 360, 1188, 1540
TaaI ACNGT 5 cut(s) 292, 483, 490, 529, 1159
TaiI ACGT 4 cut(s) 235, 271, 313, 993
TaqI TCGA 8 cut(s) 14, 576, 588, 635, 1040, 1051, 1368, 1443
TatI WGTACW 3 cut(s) 726, 945, 1159
TfiI GAWTC 3 cut(s) 136, 345, 1087
TseFI GTSAC 2 cut(s) 493, 800
TseI GCWGC 1 cut(s) 1516
Tsp45I GTSAC 2 cut(s) 493, 800
TspDTI ATGAA 6 cut(s) 83, 759, 828, 1047, 1100, 1333
TspGWI ACGGA 4 cut(s) 90, 288, 1388, 1493
Tth111I GACNNNGTC 1 cut(s) 312
Van91I CCANNNNNTGG 1 cut(s) 657
Vha464I CTTAAG 1 cut(s) 1319
VpaK11BI GGWCC 3 cut(s) 282, 521, 1178
XagI CCTNNNNNAGG 1 cut(s) 277
XapI RAATTY 5 cut(s) 21, 70, 447, 543, 590
XbaI TCTAGA 1 cut(s) 316
XceI RCATGY 4 cut(s) 227, 974, 1166, 1511
XcmI CCANNNNNNNNNTGG 1 cut(s) 1390
XmiI GTMKAC 1 cut(s) 987
XmnI GAANNNNTTC 1 cut(s) 668
XspI CTAG 4 cut(s) 186, 317, 432, 1134
ZraI GACGTC 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.