Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Reverse (-)

14406348 .. 14411974

Gene Structure 5627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G136800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGATAGCAAATGGTTGTGGAAGAAGAAATCTTCTGAGAAGAGCTCTGGAGAAAGTGACAGTTCAGGCTCAGTATCTTCACATTCTGAGAGGTACTCTGATGAACAGTTTGTGCAGGTTATAGGGTCAATAGCAAGGCGGACTGCATCAACACAAGAAGAACAACATAACATTCCAATCAAGGGGGACATTACTTATTTGTTGCAGGATCAGATTAGCCCCTTGCCAGACGAAATTTTAATTGGAATTCTTTCTCGCTTGAATACCAGGGAAGCGTCAAGAACCAGTGCCATCTCTAAGAGATGGAGAAATTTGTGGACACATGTTACATGTCTTAACTTTGATGAAGATGTAGTTCAAAACAAGAGATTTGACCAGTTTGAAATATCAGCTAGGGCAAAATGGGTGACTCAAGTCTTGCAGTTGCATCAGGGTTCAACCCTAGACATGTTCCGAATGAATCGTCATTATTCTACTTCTGTTCCAGCCACTAAATGTATCGAATTTGCGGCCCGAAAGAGAGTTCAAAGGCTTGAGATAGAGGGGGGTCATAATTCCTTGCTAAAGAAGCTACTTGAGAGCCCTTTCAAGTCCCTTAGGCACCTCTCTTTGAAGAACATAGCAGTAAATGATGAACTTGTTGGGCACTTTCTTTCCCATTGTGAAGTGCTCGAACACCTTTGTGTTTGTTGCATTGAAAATCTATATGCTGTGAAAGCAGTGGGTTCCTCCCTCCGGTTGAAGTTCCTGCAAGTAAGCAATTGTCGCCAATTAGTGAGAGTTGACATTTTTGCCCCTAATCTCGTGGAGTTTGTCTACGACAGCCGAAGTGTGTACACAAGAGGAATTGTGTTGAAACATGCACCCTCACTTGTCAAGGTATCTCTTGCAGAAAATGATGAAAGTATAACCAGAGCTTTTCTTTCAGTGTCGAGTTGTTTCTCTTGTCTTCACACTCTCAGCCTGCGCATGAATTTCGATCTGCAAATTAATATGCCCCAAGAATTTCCAGAATTAACTTGTCTCAAAGACTTATCATTGGAGGTATGTAATGCAAATTGTGGGCAAAGTCTGCTGAGTTTAACCCCCTTGTTAGAGCGGTCTCCTTCCCTACATAGACTGACGTTGCAGATGAGATGGAAATGGAATTATTATAAGAAGCAGAGTTGGAGAGATATGCAGAAGATTAATAGATGTCCTCATCATTGCCTGAAGGAGGTGAAATTTTGTGGGTTCCTTGGCTTTGGGTCTATTATCGATACTGATTTTGCCATGTACTTGATTGAGTGTGCCATGGTGCTTGAAAAGCTTATTGTTGAGCTTGAAACTCGACGAGAAATATTGCCGGAGTTTAAAGCAACCGATAATATGTTAGAAGCAACAAGAGAGCATGTTTTGCAGCTTGGAACGCAATTACCACCAAGAGCTGAGTTAATTATCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

482

Amino Acids

55.27

Weight (kDa)

8.4

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1155
Acc16I	TGCGCA	1 cut(s)	968
Acc36I	ACCTGC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	600
AccBSI	CCGCTC	1 cut(s)	1099
AccI	GTMKAC	1 cut(s)	816
AciI	CCGC	3 cut(s)	139, 509, 1099
AclWI	GGATC	1 cut(s)	216
AcsI	RAATTY	7 cut(s)	234, 246, 310, 503, 973, 1004, 1223
AcuI	CTGAAG	1 cut(s)	1232
AfaI	GTAC	3 cut(s)	95, 836, 1277
AfiI	CCNNNNNNNGG	3 cut(s)	182, 735, 1216
AflIII	ACRYGT	3 cut(s)	322, 329, 447
AjnI	CCWGG	1 cut(s)	266
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AleI	CACNNNNGTG	1 cut(s)	681
AluBI	AGCT	8 cut(s)	45, 392, 571, 917, 1309, 1321, 1402, 1427
AluI	AGCT	8 cut(s)	45, 392, 571, 917, 1309, 1321, 1402, 1427
Alw21I	GWGCWC	2 cut(s)	47, 672
Alw26I	GTCTC	2 cut(s)	1028, 1107
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	1 cut(s)	510
ApeKI	GCWGC	1 cut(s)	1399
ApoI	RAATTY	7 cut(s)	234, 246, 310, 503, 973, 1004, 1223
ArsI	GACNNNNNNTTYG	2 cut(s)	448, 480
AseI	ATTAAT	2 cut(s)	990, 1188
Asp700I	GAANNNNTTC	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	969
AspS9I	GGNCC	1 cut(s)	511
AsuHPI	GGTGA	2 cut(s)	418, 1231
AxyI	CCTNAGG	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	648
BanI	GGYRCC	1 cut(s)	600
BanII	GRGCYC	2 cut(s)	47, 584
BauI	CACGAG	1 cut(s)	803
BbsI	GAAGAC	1 cut(s)	941
Bbv12I	GWGCWC	2 cut(s)	47, 672
BbvI	GCAGC	1 cut(s)	1411
BccI	CCATC	3 cut(s)	297, 299, 1131
BcgI	CGANNNNNNTGC	2 cut(s)	958, 992
BciT130I	CCWGG	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	1028, 1107
BfaI	CTAG	2 cut(s)	393, 443
BfuAI	ACCTGC	1 cut(s)	106
BisI	GCNGC	2 cut(s)	510, 1400
BlsI	GCNGC	2 cut(s)	511, 1401
Bme1390I	CCNGG	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	3 cut(s)	602, 727, 1235
BmrFI	CCNGG	1 cut(s)	268
BmsI	GCATC	2 cut(s)	155, 436
BoxI	GACNNNNGTC	1 cut(s)	413
BpiI	GAAGAC	1 cut(s)	941
BplI	GAGNNNNNCTC	4 cut(s)	29, 61, 80, 112
BpmI	CTGGAG	1 cut(s)	69
BpuEI	CTTGAG	3 cut(s)	396, 554, 596
Bsa29I	ATCGAT	1 cut(s)	1257
BsaI	GGTCTC	1 cut(s)	1107
BsaJI	CCNNGG	3 cut(s)	267, 1237, 1293
BsaWI	WCCGGW	1 cut(s)	735
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 735, 1216
Bse1I	ACTGG	2 cut(s)	285, 376
Bse21I	CCTNAGG	1 cut(s)	596
Bse3DI	GCAATG	1 cut(s)	1204
BseBI	CCWGG	1 cut(s)	268
BseCI	ATCGAT	1 cut(s)	1257
BseDI	CCNNGG	3 cut(s)	267, 1237, 1293
BseLI	CCNNNNNNNGG	3 cut(s)	182, 735, 1216
BseMI	GCAATG	1 cut(s)	1204
BseMII	CTCAG	6 cut(s)	27, 78, 84, 973, 1067, 1419
BseNI	ACTGG	2 cut(s)	285, 376
BseSI	GKGCMC	1 cut(s)	648
BseXI	GCAGC	1 cut(s)	1411
BsgI	GTGCAG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	512
BshNI	GGYRCC	1 cut(s)	600
BshVI	ATCGAT	1 cut(s)	1257
BsiHKAI	GWGCWC	2 cut(s)	47, 672
BsiSI	CCGG	2 cut(s)	736, 1346
BslFI	GGGAC	2 cut(s)	200, 577
BslI	CCNNNNNNNGG	3 cut(s)	182, 735, 1216
BsmAI	GTCTC	2 cut(s)	1028, 1107
BsmFI	GGGAC	2 cut(s)	200, 577
BsnI	GGCC	1 cut(s)	512
Bso31I	GGTCTC	1 cut(s)	1107
Bsp1286I	GDGCHC	4 cut(s)	47, 584, 648, 672
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	2 cut(s)	208, 979
Bsp19I	CCATGG	1 cut(s)	1293
BspACI	CCGC	3 cut(s)	139, 509, 1099
BspANI	GGCC	1 cut(s)	512
BspCNI	CTCAG	6 cut(s)	28, 79, 83, 972, 1068, 1420
BspDI	ATCGAT	1 cut(s)	1257
BspLI	GGNNCC	3 cut(s)	602, 727, 1235
BspMI	ACCTGC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	216
BspQI	GCTCTTC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	600
BspTNI	GGTCTC	1 cut(s)	1107
BsrBI	CCGCTC	1 cut(s)	1099
BsrDI	GCAATG	1 cut(s)	1204
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	2 cut(s)	285, 376
BssECI	CCNNGG	3 cut(s)	267, 1237, 1293
BssMI	GATC	2 cut(s)	208, 979
BssSI	CACGAG	1 cut(s)	803
BssT1I	CCWWGG	2 cut(s)	1237, 1293
Bst2BI	CACGAG	1 cut(s)	803
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	62, 108
Bst6I	CTCTTC	1 cut(s)	35
BstAPI	GCANNNNNTGC	2 cut(s)	1072, 1396
BstAUI	TGTACA	1 cut(s)	834
BstC8I	GCNNGC	1 cut(s)	965
BstDEI	CTNAG	8 cut(s)	36, 70, 87, 297, 596, 959, 1076, 1428
BstDSI	CCRYGG	1 cut(s)	1293
BstENI	CCTNNNNNAGG	1 cut(s)	1214
BstHHI	GCGC	1 cut(s)	969
BstKTI	GATC	2 cut(s)	211, 982
BstMAI	GTCTC	2 cut(s)	1028, 1107
BstMBI	GATC	2 cut(s)	208, 979
BstMWI	GCNNNNNNNGC	7 cut(s)	568, 716, 765, 1072, 1306, 1396, 1408
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	5 cut(s)	326, 333, 451, 863, 1394
BstPAI	GACNNNNGTC	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	266
BstSLI	GKGCMC	1 cut(s)	648
BstV1I	GCAGC	1 cut(s)	1411
BstV2I	GAAGAC	1 cut(s)	941
Bsu15I	ATCGAT	1 cut(s)	1257
Bsu36I	CCTNAGG	1 cut(s)	596
BsuRI	GGCC	1 cut(s)	512
BsuTUI	ATCGAT	1 cut(s)	1257
BtgI	CCRYGG	1 cut(s)	1293
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	3 cut(s)	292, 726, 933
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	965
CfoI	GCGC	1 cut(s)	969
Cfr13I	GGNCC	1 cut(s)	511
ClaI	ATCGAT	1 cut(s)	1257
CseI	GACGC	1 cut(s)	264
Csp6I	GTAC	3 cut(s)	94, 835, 1276
CviAII	CATG	8 cut(s)	323, 330, 448, 860, 970, 1273, 1294, 1391
CviQI	GTAC	3 cut(s)	94, 835, 1276
DdeI	CTNAG	8 cut(s)	36, 70, 87, 297, 596, 959, 1076, 1428
DpnI	GATC	2 cut(s)	210, 981
DpnII	GATC	2 cut(s)	208, 979
DraI	TTTAAA	1 cut(s)	1354
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	1237, 1293
Eco24I	GRGCYC	2 cut(s)	47, 584
Eco31I	GGTCTC	1 cut(s)	1107
Eco53kI	GAGCTC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	1232
Eco81I	CCTNAGG	1 cut(s)	596
EcoICRI	GAGCTC	1 cut(s)	45
EcoNI	CCTNNNNNAGG	1 cut(s)	1214
EcoRI	GAATTC	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	1237, 1293
EcoT38I	GRGCYC	2 cut(s)	47, 584
ErhI	CCWWGG	2 cut(s)	1237, 1293
FaeI	CATG	8 cut(s)	326, 333, 451, 863, 973, 1276, 1297, 1394
FaqI	GGGAC	2 cut(s)	200, 577
FatI	CATG	8 cut(s)	322, 329, 447, 859, 969, 1272, 1293, 1390
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	2 cut(s)	510, 1400
FriOI	GRGCYC	2 cut(s)	47, 584
Fsp4HI	GCNGC	2 cut(s)	510, 1400
FspBI	CTAG	2 cut(s)	393, 443
FspI	TGCGCA	1 cut(s)	968
GlaI	GCGC	1 cut(s)	968
GluI	GCNGC	2 cut(s)	510, 1400
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	512
HapII	CCGG	2 cut(s)	736, 1346
HgaI	GACGC	1 cut(s)	264
HhaI	GCGC	1 cut(s)	969
Hin1II	CATG	8 cut(s)	326, 333, 451, 863, 973, 1276, 1297, 1394
Hin6I	GCGC	1 cut(s)	967
HinP1I	GCGC	1 cut(s)	967
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HindIII	AAGCTT	1 cut(s)	1307
HinfI	GANTC	2 cut(s)	409, 460
HpaII	CCGG	2 cut(s)	736, 1346
HphI	GGTGA	2 cut(s)	418, 1231
Hpy166II	GTNNAC	5 cut(s)	318, 784, 817, 835, 837
Hpy188I	TCNGA	5 cut(s)	37, 88, 100, 213, 455
Hpy188III	TCNNGA	3 cut(s)	48, 279, 1010
Hpy8I	GTNNAC	5 cut(s)	318, 784, 817, 835, 837
Hpy99I	CGWCG	1 cut(s)	1335
HpyAV	CCTTC	2 cut(s)	1116, 1207
HpyCH4III	ACNGT	2 cut(s)	62, 108
HpyCH4IV	ACGT	1 cut(s)	1124
HpyF10VI	GCNNNNNNNGC	7 cut(s)	568, 716, 765, 1072, 1306, 1396, 1408
HpyF3I	CTNAG	8 cut(s)	36, 70, 87, 297, 596, 959, 1076, 1428
HpySE526I	ACGT	1 cut(s)	1124
Hsp92II	CATG	8 cut(s)	326, 333, 451, 863, 973, 1276, 1297, 1394
HspAI	GCGC	1 cut(s)	967
Kzo9I	GATC	2 cut(s)	208, 979
LguI	GCTCTTC	1 cut(s)	35
Lsp1109I	GCAGC	1 cut(s)	1411
LweI	GCATC	2 cut(s)	155, 436
MaeI	CTAG	2 cut(s)	393, 443
MaeII	ACGT	1 cut(s)	1124
MaeIII	GTNAC	3 cut(s)	56, 325, 406
MalI	GATC	2 cut(s)	210, 981
MbiI	CCGCTC	1 cut(s)	1099
MboI	GATC	2 cut(s)	208, 979
MfeI	CAATTG	1 cut(s)	760
MhlI	GDGCHC	4 cut(s)	47, 584, 648, 672
MlyI	GAGTC	1 cut(s)	403
MmeI	TCCRAC	1 cut(s)	1148
MroXI	GAANNNNTTC	1 cut(s)	250
MseI	TTAA	9 cut(s)	239, 336, 990, 1016, 1082, 1188, 1353, 1433, 1444
MslI	CAYNNNNRTG	1 cut(s)	681
MspI	CCGG	2 cut(s)	736, 1346
MspR9I	CCNGG	1 cut(s)	268
MunI	CAATTG	1 cut(s)	760
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	7 cut(s)	568, 716, 765, 1072, 1306, 1396, 1408
NcoI	CCATGG	1 cut(s)	1293
NdeII	GATC	2 cut(s)	208, 979
NlaIII	CATG	8 cut(s)	326, 333, 451, 863, 973, 1276, 1297, 1394
NlaIV	GGNNCC	3 cut(s)	602, 727, 1235
NmuCI	GTSAC	2 cut(s)	56, 406
NsbI	TGCGCA	1 cut(s)	968
NspI	RCATGY	5 cut(s)	326, 333, 451, 863, 1394
OliI	CACNNNNGTG	1 cut(s)	681
PciI	ACATGT	3 cut(s)	322, 329, 447
PciSI	GCTCTTC	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	460
PkrI	GCNGC	2 cut(s)	511, 1401
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
PscI	ACATGT	3 cut(s)	322, 329, 447
PshAI	GACNNNNGTC	1 cut(s)	413
PshBI	ATTAAT	2 cut(s)	990, 1188
PsiI	TTATAA	1 cut(s)	1155
Psp124BI	GAGCTC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	3 cut(s)	602, 727, 1235
PspPI	GGNCC	1 cut(s)	511
RsaI	GTAC	3 cut(s)	95, 836, 1277
RsaNI	GTAC	3 cut(s)	94, 835, 1276
RseI	CAYNNNNRTG	1 cut(s)	681
SacI	GAGCTC	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	9 cut(s)	239, 336, 990, 1016, 1082, 1188, 1353, 1433, 1444
SatI	GCNGC	2 cut(s)	510, 1400
Sau3AI	GATC	2 cut(s)	208, 979
Sau96I	GGNCC	1 cut(s)	511
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	4 cut(s)	47, 584, 648, 672
SfaNI	GCATC	2 cut(s)	155, 436
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	3 cut(s)	411, 533, 575
SmoI	CTYRAG	3 cut(s)	411, 533, 575
SsiI	CCGC	3 cut(s)	139, 509, 1099
SspI	AATATT	1 cut(s)	1341
SspMI	CTAG	2 cut(s)	393, 443
SstI	GAGCTC	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	2 cut(s)	1237, 1293
TaaI	ACNGT	2 cut(s)	62, 108
TaiI	ACGT	1 cut(s)	1127
TaqI	TCGA	6 cut(s)	501, 672, 932, 978, 1257, 1330
TatI	WGTACW	2 cut(s)	834, 1275
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	9 cut(s)	239, 336, 990, 1016, 1082, 1188, 1353, 1433, 1444
Tru9I	TTAA	9 cut(s)	239, 336, 990, 1016, 1082, 1188, 1353, 1433, 1444
TscAI	CASTG	3 cut(s)	292, 726, 933
TseFI	GTSAC	2 cut(s)	56, 406
TseI	GCWGC	1 cut(s)	1399
Tsp45I	GTSAC	2 cut(s)	56, 406
TspDTI	ATGAA	6 cut(s)	117, 360, 473, 648, 915, 986
TspRI	CASTG	3 cut(s)	292, 726, 933
VspI	ATTAAT	2 cut(s)	990, 1188
XagI	CCTNNNNNAGG	1 cut(s)	1214
XapI	RAATTY	7 cut(s)	234, 246, 310, 503, 973, 1004, 1223
XceI	RCATGY	5 cut(s)	326, 333, 451, 863, 1394
XmiI	GTMKAC	1 cut(s)	816
XmnI	GAANNNNTTC	1 cut(s)	250
XspI	CTAG	2 cut(s)	393, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.