Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Reverse (-)

42071152 .. 42074819

Gene Structure 3668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG220000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGACTTATCTGATTTACCCTCCCTCTAATATGGCAAAAAGAAGGGGTAAGAGGACTCAATCTACATGTGGAAAACAAAACAAACTTCCAATCAATTTGGAACAGGATTGCATTAGCGTGCTGCCCGACGAAGTTCTAGTCCTCATTCTTTCCCTACTGAGTATTAAGGAAGCAGTAAGCACTTGCATCTTGTCTAAAAGGTGGAAAAATGTGTGGAAACAAATTACTTGTCTCAACTTCTTTTTAGATGAATTATCTAAAACAGAGAAGATAAAAATAGGAAGACAAGTAGTTGAAATACCTAGGACATACAACTGGGTGAATCAAGTCTTGCAATTGCATCAGGGTCAAATCTTAGATGAGTTCAAACTTTGTTCTTCTTCAATAGATTGCGATTCGACTTCTGAAATCGACAGTTGGATCGAATTGGTAATACAGAAGAAAGTACGAAAGTTTGAGATAGACCTGCAAGGAGATAGAGGTGTAGCTCCGTATTGTTCCCATTATACATTTCCAGAGAATCTATTTCGAAACCCTTTTGGTGTTTCATGGTTTTCCTGGCTTACACACCTTTCTTTGAACTATGTGAATATAACTAGTGAACTAGTCGAGCACTTCATATCAAACTGCCAACTTCTCGAACACCTGTTTATTGCTGGCTCGGAGTATTTAGAAGATTTGAAAGTTGTTGGTGAGTTGCTTCGGCTTAAGTTCCTTCAGATATGTGATTGCCTTAACTTATTTCAGCTTGAGATATCTGCTCCTTGTCTGGAGACATTCTTTTATGACGGAGAATGTCGCTATAACATCAATATTCGTGTGACGTATGCACCCTTGCTTGCTAAGATATGTATAACAGAAGACTTTCTGTTTGACTCTACAACTGGAGATTTTCAATTGTTTTGGAATTATCTTCCTCAGTTAGTGACTCTCAGGTTGGTCCTAGAGAAAGAGCCAAAGTTGGTCCCTGAATTTCCAGAATTAACTAGTCTCGAGTTCTTATCATTGAGCATTGCCAGAATTAATAGGCGAAGCCTTCTTCTTTTGACTTCTTTGATCGAGGGATCTCCTTACTTGCATAAATTTAAATTGAGGTTGAGACGGAGTTTGATGGGATGCAGGCATCGGAGAAGCAAGGTAATTAGTGAGGCGAATACAAGTCCTCATCAGTGTCTTAAGGTGGTCGAACTTTCTGGATTCAGTGGGTCGAAACATGAAACTGAGGTTGCCAGGTACTTAATTAAGAAAGCTGTTGCGCTTAAAAAATTAATTATCGATCTGGACTCGAAGCGCATTCTGGAGGAGATCAACCCTTTACGTCCGCTGTCAACCAAAATCAAAGAACTGGAGATGGCAAGAAATCATGCTTTACAGCTTGAAAAAAAATTACCCCTCGGAGGTGAGTTAATTGTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

472

Amino Acids

54.56

Weight (kDa)

8.5

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	38 - 74	6.5e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	110 - 430	5.3e-25	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	184 - 281	4.9e-09	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	390 - 425	1.4e-08	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1417
Acc36I	ACCTGC	1 cut(s)	474
AciI	CCGC	1 cut(s)	1322
AclWI	GGATC	2 cut(s)	428, 1072
AcsI	RAATTY	2 cut(s)	971, 1082
AcuI	CTGAAG	1 cut(s)	701
AfaI	GTAC	2 cut(s)	447, 1235
AfiI	CCNNNNNNNGG	1 cut(s)	1397
AflII	CTTAAG	2 cut(s)	707, 1175
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	7 cut(s)	296, 367, 384, 580, 682, 896, 1379
AhlI	ACTAGT	3 cut(s)	596, 604, 986
AjnI	CCWGG	2 cut(s)	557, 1229
AluBI	AGCT	4 cut(s)	488, 748, 1250, 1375
AluI	AGCT	4 cut(s)	488, 748, 1250, 1375
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	4 cut(s)	236, 767, 995, 1093
AlwI	GGATC	2 cut(s)	428, 1072
Ama87I	CYCGRG	1 cut(s)	992
ApeKI	GCWGC	1 cut(s)	121
ApoI	RAATTY	2 cut(s)	971, 1082
ArsI	GACNNNNNNTTYG	6 cut(s)	123, 155, 214, 246, 854, 886
AseI	ATTAAT	2 cut(s)	1023, 1268
Asp700I	GAANNNNTTC	1 cut(s)	864
AspA2I	CCTAGG	1 cut(s)	302
AspLEI	GCGC	2 cut(s)	1258, 1293
AspS9I	GGNCC	2 cut(s)	940, 964
AsuHPI	GGTGA	3 cut(s)	331, 704, 1412
AsuII	TTCGAA	1 cut(s)	529
AvaI	CYCGRG	1 cut(s)	992
AvaII	GGWCC	2 cut(s)	940, 964
AvrII	CCTAGG	1 cut(s)	302
BbsI	GAAGAC	2 cut(s)	289, 867
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	2 cut(s)	1105, 1345
BciT130I	CCWGG	2 cut(s)	559, 1231
BcoDI	GTCTC	4 cut(s)	236, 767, 995, 1093
BcuI	ACTAGT	3 cut(s)	596, 604, 986
BfaI	CTAG	6 cut(s)	137, 303, 597, 605, 944, 987
BfrI	CTTAAG	2 cut(s)	707, 1175
BfuAI	ACCTGC	1 cut(s)	474
BisI	GCNGC	1 cut(s)	122
BlnI	CCTAGG	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	123
Bme1390I	CCNGG	2 cut(s)	559, 1231
Bme18I	GGWCC	2 cut(s)	940, 964
BmeT110I	CYCGRG	1 cut(s)	992
BmgT120I	GGNCC	2 cut(s)	940, 964
BmiI	GGNNCC	1 cut(s)	966
BmrFI	CCNGG	2 cut(s)	559, 1231
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	4 cut(s)	195, 349, 1106, 1132
BmuI	ACTGGG	1 cut(s)	325
BpiI	GAAGAC	2 cut(s)	289, 867
BpmI	CTGGAG	4 cut(s)	791, 906, 1319, 1367
Bpu14I	TTCGAA	1 cut(s)	529
BpuEI	CTTGAG	1 cut(s)	770
Bsa29I	ATCGAT	1 cut(s)	1275
BsaJI	CCNNGG	2 cut(s)	302, 1393
Bsc4I	CCNNNNNNNGG	1 cut(s)	1397
Bse1I	ACTGG	3 cut(s)	320, 889, 1350
Bse3DI	GCAATG	1 cut(s)	1011
BseBI	CCWGG	2 cut(s)	559, 1231
BseCI	ATCGAT	1 cut(s)	1275
BseDI	CCNNGG	2 cut(s)	302, 1393
BseGI	GGATG	1 cut(s)	1121
BseLI	CCNNNNNNNGG	1 cut(s)	1397
BseMI	GCAATG	1 cut(s)	1011
BseMII	CTCAG	4 cut(s)	149, 932, 946, 1212
BseNI	ACTGG	3 cut(s)	320, 889, 1350
BseRI	GAGGAG	1 cut(s)	1316
BseXI	GCAGC	1 cut(s)	108
BshVI	ATCGAT	1 cut(s)	1275
BsiHKAI	GWGCWC	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	992
BslFI	GGGAC	1 cut(s)	950
BslI	CCNNNNNNNGG	1 cut(s)	1397
BsmAI	GTCTC	4 cut(s)	236, 767, 995, 1093
BsmBI	CGTCTC	1 cut(s)	1093
BsmFI	GGGAC	1 cut(s)	950
BsmI	GAATGC	1 cut(s)	1293
BsoBI	CYCGRG	1 cut(s)	992
Bsp119I	TTCGAA	1 cut(s)	529
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp143I	GATC	5 cut(s)	420, 1056, 1064, 1276, 1305
BspACI	CCGC	1 cut(s)	1322
BspCNI	CTCAG	4 cut(s)	150, 931, 945, 1213
BspDI	ATCGAT	1 cut(s)	1275
BspLI	GGNNCC	1 cut(s)	966
BspMI	ACCTGC	1 cut(s)	474
BspPI	GGATC	2 cut(s)	428, 1072
BspT104I	TTCGAA	1 cut(s)	529
BspTI	CTTAAG	2 cut(s)	707, 1175
BsrDI	GCAATG	1 cut(s)	1011
BsrI	ACTGG	3 cut(s)	320, 889, 1350
BssECI	CCNNGG	2 cut(s)	302, 1393
BssMI	GATC	5 cut(s)	420, 1056, 1064, 1276, 1305
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	559, 1231
Bst4CI	ACNGT	1 cut(s)	416
BstAFI	CTTAAG	2 cut(s)	707, 1175
BstBI	TTCGAA	1 cut(s)	529
BstC8I	GCNNGC	4 cut(s)	119, 658, 840, 1121
BstDEI	CTNAG	6 cut(s)	158, 355, 843, 918, 932, 1221
BstF5I	GGATG	1 cut(s)	1121
BstHHI	GCGC	2 cut(s)	1258, 1293
BstKTI	GATC	5 cut(s)	423, 1059, 1067, 1279, 1308
BstMAI	GTCTC	4 cut(s)	236, 767, 995, 1093
BstMBI	GATC	5 cut(s)	420, 1056, 1064, 1276, 1305
BstNI	CCWGG	2 cut(s)	559, 1231
BstNSI	RCATGY	1 cut(s)	69
BstSCI	CCNGG	2 cut(s)	557, 1229
BstV1I	GCAGC	1 cut(s)	108
BstV2I	GAAGAC	2 cut(s)	289, 867
BstX2I	RGATCY	1 cut(s)	1064
BstYI	RGATCY	1 cut(s)	1064
Bsu15I	ATCGAT	1 cut(s)	1275
BsuTUI	ATCGAT	1 cut(s)	1275
BtsCI	GGATG	1 cut(s)	1121
BtsIMutI	CAGTG	2 cut(s)	1175, 1207
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	4 cut(s)	119, 658, 840, 1121
CfoI	GCGC	2 cut(s)	1258, 1293
Cfr13I	GGNCC	2 cut(s)	940, 964
ClaI	ATCGAT	1 cut(s)	1275
Csp6I	GTAC	2 cut(s)	446, 1234
CviAII	CATG	4 cut(s)	66, 549, 1214, 1364
CviJI	RGCY	9 cut(s)	488, 562, 660, 706, 748, 955, 1035, 1250, 1375
CviKI_1	RGCY	9 cut(s)	488, 562, 660, 706, 748, 955, 1035, 1250, 1375
CviQI	GTAC	2 cut(s)	446, 1234
DdeI	CTNAG	6 cut(s)	158, 355, 843, 918, 932, 1221
DpnI	GATC	5 cut(s)	422, 1058, 1066, 1278, 1307
DpnII	GATC	5 cut(s)	420, 1056, 1064, 1276, 1305
DraI	TTTAAA	1 cut(s)	1087
Eco130I	CCWWGG	1 cut(s)	302
Eco32I	GATATC	1 cut(s)	756
Eco47I	GGWCC	2 cut(s)	940, 964
Eco57I	CTGAAG	1 cut(s)	701
Eco88I	CYCGRG	1 cut(s)	992
EcoRII	CCWGG	2 cut(s)	557, 1229
EcoRV	GATATC	1 cut(s)	756
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
Esp3I	CGTCTC	1 cut(s)	1093
FaeI	CATG	4 cut(s)	69, 552, 1217, 1367
FaqI	GGGAC	1 cut(s)	950
FatI	CATG	4 cut(s)	65, 548, 1213, 1363
Fnu4HI	GCNGC	1 cut(s)	122
FokI	GGATG	1 cut(s)	1128
Fsp4HI	GCNGC	1 cut(s)	122
FspBI	CTAG	6 cut(s)	137, 303, 597, 605, 944, 987
GlaI	GCGC	2 cut(s)	1257, 1292
GluI	GCNGC	1 cut(s)	122
GsuI	CTGGAG	4 cut(s)	791, 906, 1319, 1367
HhaI	GCGC	2 cut(s)	1258, 1293
Hin1II	CATG	4 cut(s)	69, 552, 1217, 1367
Hin6I	GCGC	2 cut(s)	1256, 1291
HinP1I	GCGC	2 cut(s)	1256, 1291
HincII	GTYRAC	1 cut(s)	1329
HindII	GTYRAC	1 cut(s)	1329
HinfI	GANTC	8 cut(s)	55, 322, 395, 520, 875, 928, 1197, 1283
HphI	GGTGA	3 cut(s)	331, 704, 1412
Hpy166II	GTNNAC	2 cut(s)	602, 1329
Hpy188I	TCNGA	6 cut(s)	12, 406, 664, 720, 1128, 1397
Hpy188III	TCNNGA	8 cut(s)	515, 638, 770, 977, 992, 1194, 1280, 1298
Hpy8I	GTNNAC	2 cut(s)	602, 1329
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	3 cut(s)	36, 725, 1046
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	2 cut(s)	824, 1318
HpyCH4V	TGCA	8 cut(s)	111, 186, 334, 340, 469, 830, 1078, 1119
HpyF3I	CTNAG	6 cut(s)	158, 355, 843, 918, 932, 1221
HpySE526I	ACGT	2 cut(s)	824, 1318
Hsp92II	CATG	4 cut(s)	69, 552, 1217, 1367
HspAI	GCGC	2 cut(s)	1256, 1291
Kzo9I	GATC	5 cut(s)	420, 1056, 1064, 1276, 1305
LmnI	GCTCC	2 cut(s)	493, 766
Lsp1109I	GCAGC	1 cut(s)	108
LweI	GCATC	4 cut(s)	195, 349, 1106, 1132
MaeI	CTAG	6 cut(s)	137, 303, 597, 605, 944, 987
MaeII	ACGT	2 cut(s)	824, 1318
MaeIII	GTNAC	2 cut(s)	820, 925
MalI	GATC	5 cut(s)	422, 1058, 1066, 1278, 1307
MboI	GATC	5 cut(s)	420, 1056, 1064, 1276, 1305
MboII	GAAGA	9 cut(s)	280, 294, 369, 372, 451, 686, 872, 905, 1031
MfeI	CAATTG	2 cut(s)	335, 896
MflI	RGATCY	1 cut(s)	1064
MhlI	GDGCHC	1 cut(s)	615
MlyI	GAGTC	4 cut(s)	49, 869, 922, 1277
MmeI	TCCRAC	1 cut(s)	398
MroXI	GAANNNNTTC	1 cut(s)	864
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	1324
MspCI	CTTAAG	2 cut(s)	707, 1175
MspR9I	CCNGG	2 cut(s)	559, 1231
MunI	CAATTG	2 cut(s)	335, 896
Mva1269I	GAATGC	1 cut(s)	1293
MvaI	CCWGG	2 cut(s)	559, 1231
NdeII	GATC	5 cut(s)	420, 1056, 1064, 1276, 1305
NlaIII	CATG	4 cut(s)	69, 552, 1217, 1367
NlaIV	GGNNCC	1 cut(s)	966
NmuCI	GTSAC	2 cut(s)	820, 925
NspI	RCATGY	1 cut(s)	69
NspV	TTCGAA	1 cut(s)	529
PacI	TTAATTAA	1 cut(s)	1242
PaeR7I	CTCGAG	1 cut(s)	992
PciI	ACATGT	1 cut(s)	65
PctI	GAATGC	1 cut(s)	1293
PdmI	GAANNNNTTC	1 cut(s)	864
PfeI	GAWTC	4 cut(s)	322, 395, 520, 1197
PkrI	GCNGC	1 cut(s)	123
PleI	GAGTC	4 cut(s)	49, 869, 922, 1277
PpsI	GAGTC	4 cut(s)	49, 869, 922, 1277
PscI	ACATGT	1 cut(s)	65
PshBI	ATTAAT	2 cut(s)	1023, 1268
PsiI	TTATAA	1 cut(s)	1417
Psp6I	CCWGG	2 cut(s)	557, 1229
PspGI	CCWGG	2 cut(s)	557, 1229
PspN4I	GGNNCC	1 cut(s)	966
PspPI	GGNCC	2 cut(s)	940, 964
PsuI	RGATCY	1 cut(s)	1064
RsaI	GTAC	2 cut(s)	447, 1235
RsaNI	GTAC	2 cut(s)	446, 1234
RseI	CAYNNNNRTG	1 cut(s)	116
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	5 cut(s)	420, 1056, 1064, 1276, 1305
Sau96I	GGNCC	2 cut(s)	940, 964
SchI	GAGTC	4 cut(s)	49, 869, 922, 1277
ScrFI	CCNGG	2 cut(s)	559, 1231
SduI	GDGCHC	1 cut(s)	615
SfaNI	GCATC	4 cut(s)	195, 349, 1106, 1132
Sfr274I	CTCGAG	1 cut(s)	992
SfuI	TTCGAA	1 cut(s)	529
SinI	GGWCC	2 cut(s)	940, 964
SlaI	CTCGAG	1 cut(s)	992
SmiI	ATTTAAAT	1 cut(s)	1087
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	4 cut(s)	707, 749, 992, 1175
SmoI	CTYRAG	4 cut(s)	707, 749, 992, 1175
SpeI	ACTAGT	3 cut(s)	596, 604, 986
SsiI	CCGC	1 cut(s)	1322
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	6 cut(s)	137, 303, 597, 605, 944, 987
StyD4I	CCNGG	2 cut(s)	557, 1229
StyI	CCWWGG	1 cut(s)	302
SwaI	ATTTAAAT	1 cut(s)	1087
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	2 cut(s)	827, 1321
TfiI	GAWTC	4 cut(s)	322, 395, 520, 1197
TscAI	CASTG	2 cut(s)	1175, 1207
TseFI	GTSAC	2 cut(s)	820, 925
TseI	GCWGC	1 cut(s)	121
Tsp45I	GTSAC	2 cut(s)	820, 925
TspDTI	ATGAA	4 cut(s)	264, 537, 607, 1230
TspGWI	ACGGA	3 cut(s)	480, 804, 1117
TspRI	CASTG	2 cut(s)	1175, 1207
Vha464I	CTTAAG	2 cut(s)	707, 1175
VpaK11BI	GGWCC	2 cut(s)	940, 964
VspI	ATTAAT	2 cut(s)	1023, 1268
XapI	RAATTY	2 cut(s)	971, 1082
XceI	RCATGY	1 cut(s)	69
XhoI	CTCGAG	1 cut(s)	992
XmaJI	CCTAGG	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	864
XspI	CTAG	6 cut(s)	137, 303, 597, 605, 944, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.