Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Reverse (-)

41178651 .. 41180711

Gene Structure 2061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G496800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGCCGAAACGAAAGGCTAAGCGTTCCAAATGGACATATGGGAAACGCATAAAACTTCCAATCAATTTGGGTGACAAGGGAGAGACTTATTCGGAGGTAGATCGGATTAGTCAGCTGCCTGACGCCATTCTGATTAGTATTCTTTCCCTACTGAGCATTAGGGAGGCAGCAAGAACTTGTTTCCTCTCTAAGAGATGGATCTATGTGTGGAAACAGGTTACATGTCTCAACTTCTACGACATAGATGCATTATATAAACCGTCGAAGAAAAGAGGACAAACAACACCCAGTTACAATTGGGTGAACCAAGTCCTGCAATTGCACCAGTGTCCATCCTTAGATGCATTCAGAATTTGTTCTTCCTCGACCTATATCGGGCCTAGTAGTTCTGAAATTGACAATTGGATCGAGTTCGGAATGCAGAAGAGAGTTCAAAGGCTTGAGATAGATTTGGAAGCAGGTAGACTTTCTCCTTTTTCTTATGCCAGTTATATCTTTCCAGATAAGCCATTTAGAAGCCCTTTCGGCGTTTCCTGCATCCAGTCCCTTAAACACCTCTCCTTGTCATTTGTAAACATAACCGGTGAACTTGTTGAGCACTTTCTATCCAATTGTGAACTCCTTGAGCATCTTTGCGTTTCTTGCTCGGATCAATTAGTAACTTTGAAAGTTGCCGGTTCGTCACTCCGGTTGAAGTTCCTACAAATAAGTGACTGTATGTATTTAGAAAAAATTGAGATTTGTGCTCCTAATCTCGTGTCATTTATTTATCACGGAATGCTGGGTTTTTATGACAGTATTCGTTTGAGGCATGCACCCTTGCTTGTAAATGTATCACTTGCAGAAAGTACTAGGTCTATAGTTCCAACTTTTCTTTCGGTTAAAAGTTGTCTTCCTCAGCTGGTGACTCTCAATCTCAACTTGCACATGAATCTGAATATGAGTGCAATGGTGAGGCACCCAGAATTTCCAGAATTAACTTGTCTCAAGGACTTAACATTGAATGTTGTCGCAAGTGATCGGCAAAGCCTCCTTAATTTGACTAAATTGATAGAGCGGTCTCCTTTCTTGCATAGATTTACATTGGAGCTAAGATGGGAACGAGTGCCATGTCTGAGGAATTTGCAGAAGGTTAATAGATGTCCTCATCAGTGCCTTAAGGTGGTGAAATTTTCTGGGTTCGTTGGGTCTAGTATCGACACTGAGCTTGCCATGTACTTCACTGAGAATGCCGTTGCGCTTGAAACGTTTCTCGTCGATCTCAGAAAGGTTGTCGTTGAAGAATCCACTCTGTTGTCTGAATTTGTTACAACCCAGAAACAATTGAGGGCAGCAAGAAAGCGTGCTTTGCAGATGGGTAAAAAACTACCTCCAGGAACTGAGTTAATTGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

466

Amino Acids

53.11

Weight (kDa)

9.2

Isoelectric Point (pI)

56.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	449
AccB1I	GGYRCC	1 cut(s)	957
AccBSI	CCGCTC	1 cut(s)	1057
AccI	GTMKAC	1 cut(s)	463
AciI	CCGC	1 cut(s)	1057
AclI	AACGTT	1 cut(s)	1247
AclWI	GGATC	3 cut(s)	206, 413, 657
AcsI	RAATTY	5 cut(s)	351, 965, 1120, 1169, 1301
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	2 cut(s)	850, 1217
AfiI	CCNNNNNNNGG	2 cut(s)	375, 1162
AflII	CTTAAG	1 cut(s)	1157
AflIII	ACRYGT	1 cut(s)	221
AgeI	ACCGGT	1 cut(s)	581
AgsI	TTSAA	6 cut(s)	434, 667, 694, 1003, 1244, 1280
AjnI	CCWGG	1 cut(s)	1372
AjuI	GAANNNNNNNTTGG	2 cut(s)	859, 891
AluBI	AGCT	4 cut(s)	115, 901, 1090, 1207
AluI	AGCT	4 cut(s)	115, 901, 1090, 1207
Alw21I	GWGCWC	2 cut(s)	600, 748
Alw26I	GTCTC	4 cut(s)	77, 230, 989, 1065
AlwI	GGATC	3 cut(s)	206, 413, 657
AlwNI	CAGNNNCTG	1 cut(s)	1379
AoxI	GGCC	1 cut(s)	377
ApeKI	GCWGC	3 cut(s)	115, 167, 1331
ApoI	RAATTY	5 cut(s)	351, 965, 1120, 1169, 1301
AsiGI	ACCGGT	1 cut(s)	581
Asp700I	GAANNNNTTC	2 cut(s)	355, 1248
AspLEI	GCGC	1 cut(s)	1240
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	6 cut(s)	83, 313, 596, 916, 964, 1177
BanI	GGYRCC	1 cut(s)	957
BauI	CACGAG	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	884
Bbv12I	GWGCWC	2 cut(s)	600, 748
BbvCI	CCTCAGC	1 cut(s)	897
BbvI	GCAGC	3 cut(s)	102, 179, 1343
BccI	CCATC	4 cut(s)	189, 340, 1089, 1348
BceAI	ACGGC	1 cut(s)	1217
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	1374
BcoDI	GTCTC	4 cut(s)	77, 230, 989, 1065
BfaI	CTAG	3 cut(s)	381, 852, 1191
BfmI	CTRYAG	1 cut(s)	858
BfrI	CTTAAG	1 cut(s)	1157
BfuAI	ACCTGC	1 cut(s)	449
BglI	GCCNNNNNGGC	1 cut(s)	525
BisI	GCNGC	3 cut(s)	116, 168, 1332
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	3 cut(s)	117, 169, 1333
BmcAI	AGTACT	1 cut(s)	850
Bme1390I	CCNGG	1 cut(s)	1374
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	959
BmrFI	CCNGG	1 cut(s)	1374
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	4 cut(s)	235, 331, 546, 637
BmuI	ACTGGG	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	884
BpmI	CTGGAG	1 cut(s)	1356
Bpu10I	CCTNAGC	1 cut(s)	897
Bpu1102I	GCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	3 cut(s)	461, 644, 971
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	1065
BsaWI	WCCGGW	2 cut(s)	581, 687
Bsc4I	CCNNNNNNNGG	2 cut(s)	375, 1162
Bse118I	RCCGGY	2 cut(s)	581, 674
Bse1I	ACTGG	4 cut(s)	288, 325, 486, 541
Bse3DI	GCAATG	1 cut(s)	954
BseBI	CCWGG	1 cut(s)	1374
BseGI	GGATG	2 cut(s)	332, 537
BseLI	CCNNNNNNNGG	2 cut(s)	375, 1162
BseMI	GCAATG	1 cut(s)	954
BseMII	CTCAG	7 cut(s)	143, 911, 1106, 1194, 1215, 1276, 1371
BseNI	ACTGG	4 cut(s)	288, 325, 486, 541
BseXI	GCAGC	3 cut(s)	102, 179, 1343
BseYI	CCCAGC	1 cut(s)	781
BshFI	GGCC	1 cut(s)	379
BshNI	GGYRCC	1 cut(s)	957
BshTI	ACCGGT	1 cut(s)	581
BsiHKAI	GWGCWC	2 cut(s)	600, 748
BsiSI	CCGG	3 cut(s)	582, 675, 688
BslFI	GGGAC	1 cut(s)	529
BslI	CCNNNNNNNGG	2 cut(s)	375, 1162
BsmAI	GTCTC	4 cut(s)	77, 230, 989, 1065
BsmFI	GGGAC	1 cut(s)	529
BsmI	GAATGC	4 cut(s)	344, 423, 783, 1234
BsnI	GGCC	1 cut(s)	379
Bso31I	GGTCTC	1 cut(s)	1065
Bsp1286I	GDGCHC	2 cut(s)	600, 748
Bsp143I	GATC	6 cut(s)	100, 198, 405, 649, 1018, 1258
Bsp1720I	GCTNAGC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	1057
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	7 cut(s)	144, 910, 1107, 1195, 1216, 1275, 1372
BspLI	GGNNCC	1 cut(s)	959
BspMI	ACCTGC	1 cut(s)	449
BspPI	GGATC	3 cut(s)	206, 413, 657
BspT107I	GGYRCC	1 cut(s)	957
BspTI	CTTAAG	1 cut(s)	1157
BspTNI	GGTCTC	1 cut(s)	1065
BsrBI	CCGCTC	1 cut(s)	1057
BsrDI	GCAATG	1 cut(s)	954
BsrFI	RCCGGY	2 cut(s)	581, 674
BsrI	ACTGG	4 cut(s)	288, 325, 486, 541
BssAI	RCCGGY	2 cut(s)	581, 674
BssMI	GATC	6 cut(s)	100, 198, 405, 649, 1018, 1258
BssNI	GRCGYC	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	755
Bst2BI	CACGAG	1 cut(s)	755
Bst2UI	CCWGG	1 cut(s)	1374
Bst4CI	ACNGT	3 cut(s)	261, 716, 797
Bst6I	CTCTTC	1 cut(s)	419
BstACI	GRCGYC	1 cut(s)	123
BstAFI	CTTAAG	1 cut(s)	1157
BstC8I	GCNNGC	3 cut(s)	813, 1209, 1344
BstF5I	GGATG	2 cut(s)	332, 537
BstHHI	GCGC	1 cut(s)	1240
BstKTI	GATC	6 cut(s)	103, 201, 408, 652, 1021, 1261
BstMAI	GTCTC	4 cut(s)	77, 230, 989, 1065
BstMBI	GATC	6 cut(s)	100, 198, 405, 649, 1018, 1258
BstMWI	GCNNNNNNNGC	4 cut(s)	525, 534, 642, 1348
BstNI	CCWGG	1 cut(s)	1374
BstNSI	RCATGY	2 cut(s)	225, 815
BstSCI	CCNGG	1 cut(s)	1372
BstSFI	CTRYAG	1 cut(s)	858
BstV1I	GCAGC	3 cut(s)	102, 179, 1343
BstV2I	GAAGAC	1 cut(s)	884
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	379
BtsCI	GGATG	2 cut(s)	332, 537
BtsIMutI	CAGTG	4 cut(s)	332, 1157, 1200, 1221
BveI	ACCTGC	1 cut(s)	449
Cac8I	GCNNGC	3 cut(s)	813, 1209, 1344
CaiI	CAGNNNCTG	1 cut(s)	1379
CfoI	GCGC	1 cut(s)	1240
Cfr10I	RCCGGY	2 cut(s)	581, 674
Cfr13I	GGNCC	1 cut(s)	377
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	849, 1216
CspAI	ACCGGT	1 cut(s)	581
CviAII	CATG	5 cut(s)	222, 812, 928, 1110, 1213
CviQI	GTAC	2 cut(s)	849, 1216
DpnI	GATC	6 cut(s)	102, 200, 407, 651, 1020, 1260
DpnII	GATC	6 cut(s)	100, 198, 405, 649, 1018, 1258
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	1065
EcoRII	CCWGG	1 cut(s)	1372
EcoT22I	ATGCAT	2 cut(s)	250, 346
FaeI	CATG	5 cut(s)	225, 815, 931, 1113, 1216
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	5 cut(s)	221, 811, 927, 1109, 1212
FauNDI	CATATG	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	463
Fnu4HI	GCNGC	3 cut(s)	116, 168, 1332
FokI	GGATG	2 cut(s)	319, 524
Fsp4HI	GCNGC	3 cut(s)	116, 168, 1332
FspBI	CTAG	3 cut(s)	381, 852, 1191
GlaI	GCGC	1 cut(s)	1239
GluI	GCNGC	3 cut(s)	116, 168, 1332
GsaI	CCCAGC	1 cut(s)	785
GsuI	CTGGAG	1 cut(s)	1356
HaeIII	GGCC	1 cut(s)	379
HapII	CCGG	3 cut(s)	582, 675, 688
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	1240
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	5 cut(s)	225, 815, 931, 1113, 1216
Hin6I	GCGC	1 cut(s)	1238
HinP1I	GCGC	1 cut(s)	1238
HinfI	GANTC	3 cut(s)	907, 931, 1283
HpaII	CCGG	3 cut(s)	582, 675, 688
HphI	GGTGA	6 cut(s)	83, 313, 596, 916, 964, 1177
Hpy166II	GTNNAC	5 cut(s)	304, 464, 574, 587, 617
Hpy188III	TCNNGA	2 cut(s)	500, 971
Hpy8I	GTNNAC	5 cut(s)	304, 464, 574, 587, 617
Hpy99I	CGWCG	2 cut(s)	265, 1259
HpyAV	CCTTC	1 cut(s)	1123
HpyCH4III	ACNGT	3 cut(s)	261, 716, 797
HpyCH4IV	ACGT	1 cut(s)	1247
HpyF10VI	GCNNNNNNNGC	4 cut(s)	525, 534, 642, 1348
HpySE526I	ACGT	1 cut(s)	1247
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	5 cut(s)	225, 815, 931, 1113, 1216
HspAI	GCGC	1 cut(s)	1238
Kzo9I	GATC	6 cut(s)	100, 198, 405, 649, 1018, 1258
LmnI	GCTCC	2 cut(s)	751, 1087
Lsp1109I	GCAGC	3 cut(s)	102, 179, 1343
LweI	GCATC	4 cut(s)	235, 331, 546, 637
MaeI	CTAG	3 cut(s)	381, 852, 1191
MaeII	ACGT	1 cut(s)	1247
MaeIII	GTNAC	8 cut(s)	71, 217, 290, 658, 681, 710, 904, 1306
MalI	GATC	6 cut(s)	102, 200, 407, 651, 1020, 1260
MbiI	CCGCTC	1 cut(s)	1057
MboI	GATC	6 cut(s)	100, 198, 405, 649, 1018, 1258
MboII	GAAGA	5 cut(s)	277, 351, 436, 884, 1292
MfeI	CAATTG	5 cut(s)	295, 317, 400, 610, 1322
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	2 cut(s)	600, 748
MlyI	GAGTC	1 cut(s)	901
MmeI	TCCRAC	1 cut(s)	890
Mph1103I	ATGCAT	2 cut(s)	250, 346
MroXI	GAANNNNTTC	2 cut(s)	355, 1248
MseI	TTAA	8 cut(s)	549, 882, 977, 995, 1035, 1134, 1158, 1385
MspA1I	CMGCKG	2 cut(s)	115, 901
MspCI	CTTAAG	1 cut(s)	1157
MspI	CCGG	3 cut(s)	582, 675, 688
MspR9I	CCNGG	1 cut(s)	1374
MunI	CAATTG	5 cut(s)	295, 317, 400, 610, 1322
Mva1269I	GAATGC	4 cut(s)	344, 423, 783, 1234
MvaI	CCWGG	1 cut(s)	1374
MwoI	GCNNNNNNNGC	4 cut(s)	525, 534, 642, 1348
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	6 cut(s)	100, 198, 405, 649, 1018, 1258
NlaIII	CATG	5 cut(s)	225, 815, 931, 1113, 1216
NlaIV	GGNNCC	1 cut(s)	959
NmuCI	GTSAC	4 cut(s)	71, 681, 710, 904
NsiI	ATGCAT	2 cut(s)	250, 346
NspI	RCATGY	2 cut(s)	225, 815
PaeI	GCATGC	1 cut(s)	815
PciI	ACATGT	1 cut(s)	221
PctI	GAATGC	4 cut(s)	344, 423, 783, 1234
PdmI	GAANNNNTTC	2 cut(s)	355, 1248
PfeI	GAWTC	2 cut(s)	931, 1283
PfoI	TCCNGGA	1 cut(s)	1372
PinAI	ACCGGT	1 cut(s)	581
PkrI	GCNGC	3 cut(s)	117, 169, 1333
PleI	GAGTC	1 cut(s)	901
PpsI	GAGTC	1 cut(s)	901
PscI	ACATGT	1 cut(s)	221
Psp1406I	AACGTT	1 cut(s)	1247
Psp6I	CCWGG	1 cut(s)	1372
PspFI	CCCAGC	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	1372
PspN4I	GGNNCC	1 cut(s)	959
PspPI	GGNCC	1 cut(s)	377
PstNI	CAGNNNCTG	1 cut(s)	1379
PsuI	RGATCY	1 cut(s)	198
PvuII	CAGCTG	2 cut(s)	115, 901
RsaI	GTAC	2 cut(s)	850, 1217
RsaNI	GTAC	2 cut(s)	849, 1216
SaqAI	TTAA	8 cut(s)	549, 882, 977, 995, 1035, 1134, 1158, 1385
SatI	GCNGC	3 cut(s)	116, 168, 1332
Sau3AI	GATC	6 cut(s)	100, 198, 405, 649, 1018, 1258
Sau96I	GGNCC	1 cut(s)	377
ScaI	AGTACT	1 cut(s)	850
SchI	GAGTC	1 cut(s)	901
ScrFI	CCNGG	1 cut(s)	1374
SduI	GDGCHC	2 cut(s)	600, 748
SfaNI	GCATC	4 cut(s)	235, 331, 546, 637
SfcI	CTRYAG	1 cut(s)	858
SmlI	CTYRAG	4 cut(s)	440, 623, 986, 1157
SmoI	CTYRAG	4 cut(s)	440, 623, 986, 1157
SphI	GCATGC	1 cut(s)	815
SsiI	CCGC	1 cut(s)	1057
SspMI	CTAG	3 cut(s)	381, 852, 1191
StyD4I	CCNGG	1 cut(s)	1372
TaaI	ACNGT	3 cut(s)	261, 716, 797
TaiI	ACGT	1 cut(s)	1250
TaqI	TCGA	5 cut(s)	263, 365, 408, 1197, 1257
TatI	WGTACW	2 cut(s)	848, 1215
TfiI	GAWTC	2 cut(s)	931, 1283
Tru1I	TTAA	8 cut(s)	549, 882, 977, 995, 1035, 1134, 1158, 1385
Tru9I	TTAA	8 cut(s)	549, 882, 977, 995, 1035, 1134, 1158, 1385
TscAI	CASTG	4 cut(s)	332, 1157, 1207, 1228
TseFI	GTSAC	4 cut(s)	71, 681, 710, 904
TseI	GCWGC	3 cut(s)	115, 167, 1331
Tsp45I	GTSAC	4 cut(s)	71, 681, 710, 904
TspDTI	ATGAA	1 cut(s)	944
TspGWI	ACGGA	1 cut(s)	789
TspRI	CASTG	4 cut(s)	332, 1157, 1207, 1228
Vha464I	CTTAAG	1 cut(s)	1157
XapI	RAATTY	5 cut(s)	351, 965, 1120, 1169, 1301
XceI	RCATGY	2 cut(s)	225, 815
XmiI	GTMKAC	1 cut(s)	463
XmnI	GAANNNNTTC	2 cut(s)	355, 1248
XspI	CTAG	3 cut(s)	381, 852, 1191
ZrmI	AGTACT	1 cut(s)	850
Zsp2I	ATGCAT	2 cut(s)	250, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.