Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Reverse (-)

41131086 .. 41132680

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G495700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGCCAAAAAGAAAGGCTGAGCATTCTGGATGGACATACAGGAAACGACAAAAGATTCCAATCAATTTGGGTGATAAGGAAGAGAATTATTCAGAGGAGGATCAGATCAGTCAGCTACCAGATGCCATTCTAATTAGCATTCTTTCCCTATTGGGTATTAGGGAAGCAGCAAGGACTTGTGTCCTCTCTAAGAGGTGGGTCTTTCTGTGGAAACAGATTACGACTCTCAACTTCGATGATATAGATGCATTATCCAAACCACAGAAGAAAAGAAAACGAGTGAAAACAACATCTAGTTACAATTGGGTGAAAGTCTTGCAATTGCACCAGGGTCCATCCTTAGATGAATTCCAAATTCATTCTTCCTCACCCAACTCCAGTCCTAGTAGTTCTGAAATCGACAATTGGATTGAATTTGCAATGTGGAGGAGAGTTCAAGGCCTTGAGATAGATTTTTATGTCTTTCTAGATAAGCTATTTAGAAGCCCTTTCAGTATTTCCTGCATCAAGTCCCTTAAACACCTCTCTTTGTCCTTTGTAAATATAACGGGCGAACTTGTTGAGCACTTTCTGTCCTACTGTGAACTCCTTGAGCATCTCTGCGTTTCTTGCTCAGATCAATTAGTAAATTTGAAAGTTGCTGAAAGTACTAGGTCTATAATTACACCTTTTCTTTCGGTTAAAAGTTGTATTCCTCAACTGGTGACTCTCAACTTGCACATGAATCTGAGTGCGAATGGAGGGGCGTGGCTCCCAGAATTTCCAGAATTAACTAGTCTCAAGGACTTATCATTGAGTGTTATTGCAACTGATCGGCTAAGCCTCCTCTTTTTGACTAAATTGATAGAGCGGTCTCCTTTCTTGCATGGATTTACATTGAAGTTAGGATGGGCACGCGACTCGTGTAAGAGCAATATGCAGAAGGTTAATAAATGTCCTCATCAGTGCCTTAAGGTGGTGAAATTTTCTGGGTTCGTTGGGTCTATTATCGACACTGATCTTGCCATGTACTTCACTGAGAATGCCGTTGCACTTGAAACGTTTATCGTCAATCTCAAAAAGGTTGTCGTTGAAGAATCCGCTCTATTGTCTGAATTTGTTACAACCCAGAAAAAATTGAGGGCAACAAGAAAGCGGGCCTTGCAGATTGGAGGAAAACTACCTCCAGGAGCTGAGTTAGTTATTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

397

Amino Acids

44.92

Weight (kDa)

9.08

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	850, 1082
AccII	CGCG	1 cut(s)	897
AciI	CCGC	3 cut(s)	850, 1080, 1135
AclI	AACGTT	1 cut(s)	1040
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	7 cut(s)	347, 354, 413, 628, 758, 962, 1094
AfaI	GTAC	2 cut(s)	649, 1010
AfiI	CCNNNNNNNGG	1 cut(s)	955
AflII	CTTAAG	1 cut(s)	950
AgsI	TTSAA	6 cut(s)	413, 437, 634, 880, 1037, 1073
AhlI	ACTAGT	1 cut(s)	773
AjnI	CCWGG	2 cut(s)	327, 1165
AluBI	AGCT	3 cut(s)	115, 475, 1172
AluI	AGCT	3 cut(s)	115, 475, 1172
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	2 cut(s)	782, 858
AlwI	GGATC	1 cut(s)	108
AlwNI	CAGNNNCTG	1 cut(s)	1172
AoxI	GGCC	2 cut(s)	439, 1137
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	7 cut(s)	347, 354, 413, 628, 758, 962, 1094
ArsI	GACNNNNNNTTYG	2 cut(s)	1050, 1082
AspS9I	GGNCC	2 cut(s)	332, 1137
AsuHPI	GGTGA	5 cut(s)	83, 319, 360, 715, 970
AvaII	GGWCC	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	895
BauI	CACGAG	1 cut(s)	901
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	3 cut(s)	24, 343, 882
BceAI	ACGGC	1 cut(s)	1010
BcgI	CGANNNNNNTGC	2 cut(s)	882, 916
BciT130I	CCWGG	2 cut(s)	329, 1167
BcoDI	GTCTC	2 cut(s)	782, 858
BcuI	ACTAGT	1 cut(s)	773
BfaI	CTAG	5 cut(s)	294, 384, 467, 651, 774
BfrI	CTTAAG	1 cut(s)	950
BisI	GCNGC	1 cut(s)	168
BlpI	GCTNAGC	2 cut(s)	18, 818
BlsI	GCNGC	1 cut(s)	169
BmcAI	AGTACT	1 cut(s)	649
Bme1390I	CCNGG	2 cut(s)	329, 1167
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	332, 1137
BmiI	GGNNCC	2 cut(s)	333, 752
BmrFI	CCNGG	2 cut(s)	329, 1167
BmsI	GCATC	4 cut(s)	112, 235, 513, 604
BoxI	GACNNNNGTC	1 cut(s)	179
BpmI	CTGGAG	2 cut(s)	361, 1149
Bpu1102I	GCTNAGC	2 cut(s)	18, 818
BpuEI	CTTGAG	3 cut(s)	464, 611, 764
BsaBI	GATNNNNATC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	858
BsaJI	CCNNGG	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	955
Bse1I	ACTGG	2 cut(s)	378, 705
Bse3DI	GCAATG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	329, 1167
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	3 cut(s)	35, 335, 893
BseJI	GATNNNNATC	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	955
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	5 cut(s)	9, 627, 719, 1008, 1164
BseNI	ACTGG	2 cut(s)	378, 705
BseRI	GAGGAG	3 cut(s)	110, 442, 815
BseSI	GKGCMC	1 cut(s)	895
BseXI	GCAGC	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	897
BshFI	GGCC	2 cut(s)	441, 1139
BsiHKAI	GWGCWC	1 cut(s)	567
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	1 cut(s)	955
BsmAI	GTCTC	2 cut(s)	782, 858
BsmFI	GGGAC	1 cut(s)	496
BsmI	GAATGC	3 cut(s)	22, 138, 1027
BsnI	GGCC	2 cut(s)	441, 1139
Bso31I	GGTCTC	1 cut(s)	858
Bsp1286I	GDGCHC	2 cut(s)	567, 895
Bsp143I	GATC	5 cut(s)	100, 105, 616, 811, 997
Bsp1720I	GCTNAGC	2 cut(s)	18, 818
BspACI	CCGC	3 cut(s)	850, 1080, 1135
BspANI	GGCC	2 cut(s)	441, 1139
BspCNI	CTCAG	5 cut(s)	10, 626, 720, 1009, 1165
BspFNI	CGCG	1 cut(s)	897
BspLI	GGNNCC	2 cut(s)	333, 752
BspPI	GGATC	1 cut(s)	108
BspTI	CTTAAG	1 cut(s)	950
BspTNI	GGTCTC	1 cut(s)	858
BsrBI	CCGCTC	2 cut(s)	850, 1082
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	378, 705
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	5 cut(s)	100, 105, 616, 811, 997
BssSI	CACGAG	1 cut(s)	901
Bst2BI	CACGAG	1 cut(s)	901
Bst2UI	CCWGG	2 cut(s)	329, 1167
Bst4CI	ACNGT	1 cut(s)	581
Bst6I	CTCTTC	1 cut(s)	75
BstAFI	CTTAAG	1 cut(s)	950
BstC8I	GCNNGC	2 cut(s)	895, 1137
BstDEI	CTNAG	8 cut(s)	18, 189, 340, 613, 728, 818, 1017, 1173
BstF5I	GGATG	3 cut(s)	35, 335, 893
BstFNI	CGCG	1 cut(s)	897
BstKTI	GATC	5 cut(s)	103, 108, 619, 814, 1000
BstMAI	GTCTC	2 cut(s)	782, 858
BstMBI	GATC	5 cut(s)	100, 105, 616, 811, 997
BstMWI	GCNNNNNNNGC	2 cut(s)	609, 1141
BstNI	CCWGG	2 cut(s)	329, 1167
BstPAI	GACNNNNGTC	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	327, 1165
BstSLI	GKGCMC	1 cut(s)	895
BstUI	CGCG	1 cut(s)	897
BstV1I	GCAGC	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	441, 1139
BtsCI	GGATG	3 cut(s)	35, 335, 893
BtsIMutI	CAGTG	3 cut(s)	950, 993, 1014
Cac8I	GCNNGC	2 cut(s)	895, 1137
CaiI	CAGNNNCTG	1 cut(s)	1172
Cfr13I	GGNCC	2 cut(s)	332, 1137
Csp6I	GTAC	2 cut(s)	648, 1009
CviAII	CATG	3 cut(s)	721, 866, 1006
CviQI	GTAC	2 cut(s)	648, 1009
DdeI	CTNAG	8 cut(s)	18, 189, 340, 613, 728, 818, 1017, 1173
DpnI	GATC	5 cut(s)	102, 107, 618, 813, 999
DpnII	GATC	5 cut(s)	100, 105, 616, 811, 997
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco147I	AGGCCT	1 cut(s)	441
Eco31I	GGTCTC	1 cut(s)	858
Eco47I	GGWCC	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	327, 1165
EcoT22I	ATGCAT	1 cut(s)	250
FaeI	CATG	3 cut(s)	724, 869, 1009
FaiI	YATR	9 cut(s)	37, 242, 459, 545, 659, 722, 867, 917, 1007
FalI	AAGNNNNNCTT	2 cut(s)	1124, 1156
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	3 cut(s)	720, 865, 1005
FauI	CCCGC	1 cut(s)	1128
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	3 cut(s)	42, 322, 900
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	5 cut(s)	294, 384, 467, 651, 774
GluI	GCNGC	1 cut(s)	168
GsuI	CTGGAG	2 cut(s)	361, 1149
HaeIII	GGCC	2 cut(s)	441, 1139
Hin1II	CATG	3 cut(s)	724, 869, 1009
HinfI	GANTC	6 cut(s)	55, 223, 706, 724, 899, 1076
HphI	GGTGA	5 cut(s)	83, 319, 360, 715, 970
Hpy166II	GTNNAC	1 cut(s)	584
Hpy188I	TCNGA	6 cut(s)	94, 105, 394, 616, 729, 1093
Hpy188III	TCNNGA	3 cut(s)	27, 467, 764
Hpy8I	GTNNAC	1 cut(s)	584
HpyAV	CCTTC	1 cut(s)	916
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	1 cut(s)	1040
HpyF10VI	GCNNNNNNNGC	2 cut(s)	609, 1141
HpyF3I	CTNAG	8 cut(s)	18, 189, 340, 613, 728, 818, 1017, 1173
HpySE526I	ACGT	1 cut(s)	1040
Hsp92II	CATG	3 cut(s)	724, 869, 1009
Kzo9I	GATC	5 cut(s)	100, 105, 616, 811, 997
LmnI	GCTCC	2 cut(s)	756, 1169
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	4 cut(s)	112, 235, 513, 604
MaeI	CTAG	5 cut(s)	294, 384, 467, 651, 774
MaeII	ACGT	1 cut(s)	1040
MaeIII	GTNAC	3 cut(s)	296, 703, 1099
MalI	GATC	5 cut(s)	102, 107, 618, 813, 999
MbiI	CCGCTC	2 cut(s)	850, 1082
MboI	GATC	5 cut(s)	100, 105, 616, 811, 997
MboII	GAAGA	4 cut(s)	92, 277, 354, 1085
MfeI	CAATTG	3 cut(s)	301, 320, 403
MhlI	GDGCHC	2 cut(s)	567, 895
MlyI	GAGTC	3 cut(s)	217, 700, 893
Mph1103I	ATGCAT	1 cut(s)	250
MseI	TTAA	5 cut(s)	516, 681, 770, 927, 951
MspCI	CTTAAG	1 cut(s)	950
MspR9I	CCNGG	2 cut(s)	329, 1167
MunI	CAATTG	3 cut(s)	301, 320, 403
Mva1269I	GAATGC	3 cut(s)	22, 138, 1027
MvaI	CCWGG	2 cut(s)	329, 1167
MvnI	CGCG	1 cut(s)	897
MwoI	GCNNNNNNNGC	2 cut(s)	609, 1141
NdeII	GATC	5 cut(s)	100, 105, 616, 811, 997
NlaIII	CATG	3 cut(s)	724, 869, 1009
NlaIV	GGNNCC	2 cut(s)	333, 752
NmuCI	GTSAC	1 cut(s)	703
NsiI	ATGCAT	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	441
PctI	GAATGC	3 cut(s)	22, 138, 1027
PfeI	GAWTC	3 cut(s)	55, 724, 1076
PfoI	TCCNGGA	1 cut(s)	1165
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	3 cut(s)	217, 700, 893
PpsI	GAGTC	3 cut(s)	217, 700, 893
PshAI	GACNNNNGTC	1 cut(s)	179
Psp1406I	AACGTT	1 cut(s)	1040
Psp6I	CCWGG	2 cut(s)	327, 1165
PspGI	CCWGG	2 cut(s)	327, 1165
PspN4I	GGNNCC	2 cut(s)	333, 752
PspPI	GGNCC	2 cut(s)	332, 1137
PstNI	CAGNNNCTG	1 cut(s)	1172
RsaI	GTAC	2 cut(s)	649, 1010
RsaNI	GTAC	2 cut(s)	648, 1009
SaqAI	TTAA	5 cut(s)	516, 681, 770, 927, 951
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	5 cut(s)	100, 105, 616, 811, 997
Sau96I	GGNCC	2 cut(s)	332, 1137
ScaI	AGTACT	1 cut(s)	649
SchI	GAGTC	3 cut(s)	217, 700, 893
ScrFI	CCNGG	2 cut(s)	329, 1167
SduI	GDGCHC	2 cut(s)	567, 895
SfaNI	GCATC	4 cut(s)	112, 235, 513, 604
SinI	GGWCC	1 cut(s)	332
SmlI	CTYRAG	4 cut(s)	443, 590, 779, 950
SmoI	CTYRAG	4 cut(s)	443, 590, 779, 950
SpeI	ACTAGT	1 cut(s)	773
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	3 cut(s)	850, 1080, 1135
SspMI	CTAG	5 cut(s)	294, 384, 467, 651, 774
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	327, 1165
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	1 cut(s)	1043
TaqI	TCGA	3 cut(s)	234, 399, 990
TatI	WGTACW	2 cut(s)	647, 1008
TfiI	GAWTC	3 cut(s)	55, 724, 1076
Tru1I	TTAA	5 cut(s)	516, 681, 770, 927, 951
Tru9I	TTAA	5 cut(s)	516, 681, 770, 927, 951
TscAI	CASTG	3 cut(s)	950, 1000, 1021
TseFI	GTSAC	1 cut(s)	703
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	3 cut(s)	347, 360, 737
TspRI	CASTG	3 cut(s)	950, 1000, 1021
Vha464I	CTTAAG	1 cut(s)	950
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	7 cut(s)	347, 354, 413, 628, 758, 962, 1094
XbaI	TCTAGA	1 cut(s)	466
XspI	CTAG	5 cut(s)	294, 384, 467, 651, 774
ZrmI	AGTACT	1 cut(s)	649
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.