Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Reverse (-)

41175450 .. 41176826

Gene Structure 1377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G018680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCAAAAAGAAGGGGTAAGAGGACTCAATCTACATGTGGAAAACAAAACAAACTTCCAATCAATTTGGAACAGGATTGCATTAGCGTGCTGCCCGACGAAGTTCTAGTCCTCATTCTTTCCCTACTGAGTATTAAGGAAGCAGTAAGCACTTGCATCTTGTCTAAAAGGTGGAAAAATGTGTGGAAACAACTTACTTGTCTCAACTTCTTTTTAGATGAATTATCTAAAACAGAGAAGTTAAAAATAGGAAGACAAGTAGTTGAAATACCTAGGACATACTACTGGGTGAATCAAGTCTTGCAATTGCATCAGGGTCAAATCTTAGATGAGTTCAAACTTTGTTCTTCTTCAATAGATTGCGATTCGACTTCTGAAATCGACAGTTGGATCGAATTGGTAATACAGAAGAAAGTACGAAAGTTTGAGATAGACCTGCAAGGAGATAGAGGTGTAGCTCCGTATTGTTCCCATTATACATTTCCAGAGAATCTATTTCGAAACCCTTTTGGTGTTTCATGGTTTTCTTGGCTTACACACCTTTCTTTGAACTATGTGAATATAACTAGTGAACTAGTCGAGCACTTCATATCAAACTGCCAACTTCTCGAACACCTGTTTATTGCTGGCTCGGAGTATTTAGAAGATTTGAAAGTTGTTGGTGAGTTGCTTCGGCTTAAGTTCCTTCAGATATGTGATTGCCTAAACTTATTTCAGCTTGAGATATCTGCTCCTTGTCTGGAGACATTCTTTTATGACGGAGAATGTCGCTATAACATCAATATTCGTGTGACGTATGCACCCTTGCTTGCTAAGATATGTATAACAGAAGACTTTCTGTTTGACTCTACAACTGGAGATTTTCAATTGTTTTGGAATTATCTTCCTCAGTTACCAAAGTTGGTCCCTGAATTTCCAGAATTAACTAGTCTCGAGTTCTTATCATTGAGCATTGCCAGAATTAATAGGCGAAGCCTTCTTCTTTTGACTTCTTTGATCGAGGGATCTCCGTACTTGCATAAATTTAAATTGAGAAGCAAGGTAATTAGTGAGGCGAATACAAGTCCTCATCAGTGTCTTAAGGTGGTCGAACTTTCTGGGTTCAGTGGGTCGAAACATGAAACTGAGGTTGCCAGGTACTTAATTAAGAAAGCTGTTGCGCTTAAAAAATTAATTATCGATCTGGACTCGAAGCGCATTCCGGAGGAGATCAACCCTTTACGTCCGCTGTCAACCAAAATCAAAGAACTGGAGATGGCAAGAATGCTTGAAAAAAAATTACCCCTCGGAGGTGAGTTAATTGTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

436

Amino Acids

50.27

Weight (kDa)

7.47

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	28 - 65	4.7e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	100 - 397	2.8e-16	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	174 - 271	4.3e-09	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	358 - 393	1.3e-08	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1309
Acc36I	ACCTGC	1 cut(s)	444
AccIII	TCCGGA	1 cut(s)	1201
AciI	CCGC	1 cut(s)	1226
AclWI	GGATC	2 cut(s)	398, 1012
AcsI	RAATTY	2 cut(s)	911, 1022
AcuI	CTGAAG	1 cut(s)	671
AfaI	GTAC	3 cut(s)	417, 1013, 1139
AfiI	CCNNNNNNNGG	1 cut(s)	1289
AflII	CTTAAG	2 cut(s)	677, 1079
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	7 cut(s)	266, 337, 354, 550, 652, 866, 1271
AhlI	ACTAGT	3 cut(s)	566, 574, 926
AjnI	CCWGG	1 cut(s)	1133
AluBI	AGCT	3 cut(s)	458, 718, 1154
AluI	AGCT	3 cut(s)	458, 718, 1154
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	3 cut(s)	206, 737, 935
AlwI	GGATC	2 cut(s)	398, 1012
Ama87I	CYCGRG	1 cut(s)	932
Aor13HI	TCCGGA	1 cut(s)	1201
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	2 cut(s)	911, 1022
ArsI	GACNNNNNNTTYG	4 cut(s)	93, 125, 824, 856
AseI	ATTAAT	2 cut(s)	963, 1172
Asp700I	GAANNNNTTC	1 cut(s)	834
AspA2I	CCTAGG	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	1162, 1197
AspS9I	GGNCC	1 cut(s)	904
AsuHPI	GGTGA	3 cut(s)	301, 674, 1304
AsuII	TTCGAA	1 cut(s)	499
AvaI	CYCGRG	1 cut(s)	932
AvaII	GGWCC	1 cut(s)	904
AvrII	CCTAGG	1 cut(s)	272
BbsI	GAAGAC	2 cut(s)	259, 837
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	1249
BciT130I	CCWGG	1 cut(s)	1135
BcoDI	GTCTC	3 cut(s)	206, 737, 935
BcuI	ACTAGT	3 cut(s)	566, 574, 926
BfaI	CTAG	5 cut(s)	107, 273, 567, 575, 927
BfrI	CTTAAG	2 cut(s)	677, 1079
BfuAI	ACCTGC	1 cut(s)	444
BisI	GCNGC	1 cut(s)	92
BlnI	CCTAGG	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	1135
Bme18I	GGWCC	1 cut(s)	904
BmeT110I	CYCGRG	1 cut(s)	932
BmgT120I	GGNCC	1 cut(s)	904
BmiI	GGNNCC	1 cut(s)	906
BmrFI	CCNGG	1 cut(s)	1135
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	2 cut(s)	165, 319
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	2 cut(s)	259, 837
BpmI	CTGGAG	3 cut(s)	761, 876, 1271
Bpu14I	TTCGAA	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	740
Bsa29I	ATCGAT	1 cut(s)	1179
BsaJI	CCNNGG	2 cut(s)	272, 1285
BsaWI	WCCGGW	1 cut(s)	1201
Bsc4I	CCNNNNNNNGG	1 cut(s)	1289
Bse1I	ACTGG	3 cut(s)	290, 859, 1254
Bse3DI	GCAATG	1 cut(s)	951
BseAI	TCCGGA	1 cut(s)	1201
BseBI	CCWGG	1 cut(s)	1135
BseCI	ATCGAT	1 cut(s)	1179
BseDI	CCNNGG	2 cut(s)	272, 1285
BseLI	CCNNNNNNNGG	1 cut(s)	1289
BseMI	GCAATG	1 cut(s)	951
BseMII	CTCAG	3 cut(s)	119, 902, 1116
BseNI	ACTGG	3 cut(s)	290, 859, 1254
BseRI	GAGGAG	1 cut(s)	1220
BseXI	GCAGC	1 cut(s)	78
BshVI	ATCGAT	1 cut(s)	1179
BsiHKAI	GWGCWC	1 cut(s)	585
BsiHKCI	CYCGRG	1 cut(s)	932
BsiSI	CCGG	1 cut(s)	1202
BslFI	GGGAC	1 cut(s)	890
BslI	CCNNNNNNNGG	1 cut(s)	1289
BsmAI	GTCTC	3 cut(s)	206, 737, 935
BsmFI	GGGAC	1 cut(s)	890
BsmI	GAATGC	2 cut(s)	1197, 1269
BsoBI	CYCGRG	1 cut(s)	932
Bsp119I	TTCGAA	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp13I	TCCGGA	1 cut(s)	1201
Bsp143I	GATC	5 cut(s)	390, 996, 1004, 1180, 1209
BspACI	CCGC	1 cut(s)	1226
BspCNI	CTCAG	3 cut(s)	120, 901, 1117
BspDI	ATCGAT	1 cut(s)	1179
BspEI	TCCGGA	1 cut(s)	1201
BspLI	GGNNCC	1 cut(s)	906
BspMI	ACCTGC	1 cut(s)	444
BspPI	GGATC	2 cut(s)	398, 1012
BspT104I	TTCGAA	1 cut(s)	499
BspTI	CTTAAG	2 cut(s)	677, 1079
BsrDI	GCAATG	1 cut(s)	951
BsrI	ACTGG	3 cut(s)	290, 859, 1254
BssECI	CCNNGG	2 cut(s)	272, 1285
BssMI	GATC	5 cut(s)	390, 996, 1004, 1180, 1209
BssT1I	CCWWGG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	1135
Bst4CI	ACNGT	1 cut(s)	386
BstAFI	CTTAAG	2 cut(s)	677, 1079
BstBI	TTCGAA	1 cut(s)	499
BstC8I	GCNNGC	3 cut(s)	89, 628, 810
BstDEI	CTNAG	5 cut(s)	128, 325, 813, 888, 1125
BstHHI	GCGC	2 cut(s)	1162, 1197
BstKTI	GATC	5 cut(s)	393, 999, 1007, 1183, 1212
BstMAI	GTCTC	3 cut(s)	206, 737, 935
BstMBI	GATC	5 cut(s)	390, 996, 1004, 1180, 1209
BstNI	CCWGG	1 cut(s)	1135
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	1133
BstV1I	GCAGC	1 cut(s)	78
BstV2I	GAAGAC	2 cut(s)	259, 837
BstX2I	RGATCY	1 cut(s)	1004
BstYI	RGATCY	1 cut(s)	1004
Bsu15I	ATCGAT	1 cut(s)	1179
BsuTUI	ATCGAT	1 cut(s)	1179
BtsIMutI	CAGTG	2 cut(s)	1079, 1111
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	3 cut(s)	89, 628, 810
CfoI	GCGC	2 cut(s)	1162, 1197
Cfr13I	GGNCC	1 cut(s)	904
ClaI	ATCGAT	1 cut(s)	1179
Csp6I	GTAC	3 cut(s)	416, 1012, 1138
CviAII	CATG	3 cut(s)	36, 519, 1118
CviJI	RGCY	7 cut(s)	458, 532, 630, 676, 718, 975, 1154
CviKI_1	RGCY	7 cut(s)	458, 532, 630, 676, 718, 975, 1154
CviQI	GTAC	3 cut(s)	416, 1012, 1138
DdeI	CTNAG	5 cut(s)	128, 325, 813, 888, 1125
DpnI	GATC	5 cut(s)	392, 998, 1006, 1182, 1211
DpnII	GATC	5 cut(s)	390, 996, 1004, 1180, 1209
DraI	TTTAAA	1 cut(s)	1027
Eco130I	CCWWGG	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	726
Eco47I	GGWCC	1 cut(s)	904
Eco57I	CTGAAG	1 cut(s)	671
Eco88I	CYCGRG	1 cut(s)	932
EcoRII	CCWGG	1 cut(s)	1133
EcoRV	GATATC	1 cut(s)	726
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	3 cut(s)	39, 522, 1121
FaqI	GGGAC	1 cut(s)	890
FatI	CATG	3 cut(s)	35, 518, 1117
Fnu4HI	GCNGC	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	5 cut(s)	107, 273, 567, 575, 927
GlaI	GCGC	2 cut(s)	1161, 1196
GluI	GCNGC	1 cut(s)	92
GsuI	CTGGAG	3 cut(s)	761, 876, 1271
HapII	CCGG	1 cut(s)	1202
HhaI	GCGC	2 cut(s)	1162, 1197
Hin1II	CATG	3 cut(s)	39, 522, 1121
Hin6I	GCGC	2 cut(s)	1160, 1195
HinP1I	GCGC	2 cut(s)	1160, 1195
HincII	GTYRAC	1 cut(s)	1233
HindII	GTYRAC	1 cut(s)	1233
HinfI	GANTC	6 cut(s)	25, 292, 365, 490, 845, 1187
HpaII	CCGG	1 cut(s)	1202
HphI	GGTGA	3 cut(s)	301, 674, 1304
Hpy166II	GTNNAC	2 cut(s)	572, 1233
Hpy188I	TCNGA	4 cut(s)	376, 634, 690, 1289
Hpy188III	TCNNGA	7 cut(s)	485, 608, 740, 917, 932, 1184, 1202
Hpy8I	GTNNAC	2 cut(s)	572, 1233
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	6, 695, 986
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	2 cut(s)	794, 1222
HpyCH4V	TGCA	7 cut(s)	81, 156, 304, 310, 439, 800, 1018
HpyF3I	CTNAG	5 cut(s)	128, 325, 813, 888, 1125
HpySE526I	ACGT	2 cut(s)	794, 1222
Hsp92II	CATG	3 cut(s)	39, 522, 1121
HspAI	GCGC	2 cut(s)	1160, 1195
Kpn2I	TCCGGA	1 cut(s)	1201
Kzo9I	GATC	5 cut(s)	390, 996, 1004, 1180, 1209
LmnI	GCTCC	2 cut(s)	463, 736
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	2 cut(s)	165, 319
MaeI	CTAG	5 cut(s)	107, 273, 567, 575, 927
MaeII	ACGT	2 cut(s)	794, 1222
MaeIII	GTNAC	2 cut(s)	790, 891
MalI	GATC	5 cut(s)	392, 998, 1006, 1182, 1211
MboI	GATC	5 cut(s)	390, 996, 1004, 1180, 1209
MboII	GAAGA	8 cut(s)	264, 339, 342, 421, 656, 842, 875, 971
MfeI	CAATTG	2 cut(s)	305, 866
MflI	RGATCY	1 cut(s)	1004
MhlI	GDGCHC	1 cut(s)	585
MlyI	GAGTC	3 cut(s)	19, 839, 1181
MmeI	TCCRAC	1 cut(s)	368
MroI	TCCGGA	1 cut(s)	1201
MroXI	GAANNNNTTC	1 cut(s)	834
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	1228
MspCI	CTTAAG	2 cut(s)	677, 1079
MspI	CCGG	1 cut(s)	1202
MspR9I	CCNGG	1 cut(s)	1135
MunI	CAATTG	2 cut(s)	305, 866
Mva1269I	GAATGC	2 cut(s)	1197, 1269
MvaI	CCWGG	1 cut(s)	1135
NdeII	GATC	5 cut(s)	390, 996, 1004, 1180, 1209
NlaIII	CATG	3 cut(s)	39, 522, 1121
NlaIV	GGNNCC	1 cut(s)	906
NmuCI	GTSAC	1 cut(s)	790
NspI	RCATGY	1 cut(s)	39
NspV	TTCGAA	1 cut(s)	499
PacI	TTAATTAA	1 cut(s)	1146
PaeR7I	CTCGAG	1 cut(s)	932
PciI	ACATGT	1 cut(s)	35
PctI	GAATGC	2 cut(s)	1197, 1269
PdmI	GAANNNNTTC	1 cut(s)	834
PfeI	GAWTC	3 cut(s)	292, 365, 490
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	3 cut(s)	19, 839, 1181
PpsI	GAGTC	3 cut(s)	19, 839, 1181
PscI	ACATGT	1 cut(s)	35
PshBI	ATTAAT	2 cut(s)	963, 1172
PsiI	TTATAA	1 cut(s)	1309
Psp6I	CCWGG	1 cut(s)	1133
PspGI	CCWGG	1 cut(s)	1133
PspN4I	GGNNCC	1 cut(s)	906
PspPI	GGNCC	1 cut(s)	904
PsuI	RGATCY	1 cut(s)	1004
RsaI	GTAC	3 cut(s)	417, 1013, 1139
RsaNI	GTAC	3 cut(s)	416, 1012, 1138
RseI	CAYNNNNRTG	1 cut(s)	86
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	5 cut(s)	390, 996, 1004, 1180, 1209
Sau96I	GGNCC	1 cut(s)	904
SchI	GAGTC	3 cut(s)	19, 839, 1181
ScrFI	CCNGG	1 cut(s)	1135
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	2 cut(s)	165, 319
Sfr274I	CTCGAG	1 cut(s)	932
SfuI	TTCGAA	1 cut(s)	499
SinI	GGWCC	1 cut(s)	904
SlaI	CTCGAG	1 cut(s)	932
SmiI	ATTTAAAT	1 cut(s)	1027
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	4 cut(s)	677, 719, 932, 1079
SmoI	CTYRAG	4 cut(s)	677, 719, 932, 1079
SpeI	ACTAGT	3 cut(s)	566, 574, 926
SsiI	CCGC	1 cut(s)	1226
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	5 cut(s)	107, 273, 567, 575, 927
StyD4I	CCNGG	1 cut(s)	1133
StyI	CCWWGG	1 cut(s)	272
SwaI	ATTTAAAT	1 cut(s)	1027
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	2 cut(s)	797, 1225
TfiI	GAWTC	3 cut(s)	292, 365, 490
TscAI	CASTG	2 cut(s)	1079, 1111
TseFI	GTSAC	1 cut(s)	790
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	790
TspDTI	ATGAA	4 cut(s)	234, 507, 577, 1134
TspGWI	ACGGA	3 cut(s)	450, 774, 999
TspRI	CASTG	2 cut(s)	1079, 1111
Vha464I	CTTAAG	2 cut(s)	677, 1079
VpaK11BI	GGWCC	1 cut(s)	904
VspI	ATTAAT	2 cut(s)	963, 1172
XapI	RAATTY	2 cut(s)	911, 1022
XceI	RCATGY	1 cut(s)	39
XhoI	CTCGAG	1 cut(s)	932
XmaJI	CCTAGG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	834
XspI	CTAG	5 cut(s)	107, 273, 567, 575, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.