Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Reverse (-)

28187683 .. 28189142

Gene Structure 1460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0202400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGGGTTGCTATCGGCGCGTTTGGAGCAATTCGAAAGGGAATTTTTGTCAGCTGTTCAGCTGGAAACTCTGGCCCTTTCTATAGTTCCATGTCAAACGAGGTCAAAATTTAGCACTTCACCATTGCTACCTCTTGTTTATCCAGGTGCAAATCCCAATAACCAAACTGAGTTTTGTGCCTTGGGATCTCTTGTAAATGTTGAAGGGAAAGTAGTGGTGTGTGAGAGAGGTGGAGGAGTGGGAAGAACTGCCAAAGGGGAAGAAGTGAAAAGAGCAGGAGGTGCTGCCATGATTCTAGTGAACCAAATCACTGATGACTATAGCACCTTAGCTGATGCTCATGTACTTCCAGCAACAAATGTTGGTTTTCAAGCAGGTTTGAGCATCAAAACCTATATAAACTCAACAACTACACCTATAGCCACAGTCTATTCCCCACGCACTGAAATCGGAGATGCACTTGCTCCAATGGTTGCTTCTTTTTCATCAAGAGGACCGAGCATAGCTAGGCCCGGAATTTTAAAACCTGACATAATTGGTCTTGGTGTTAACATCCTTGTTGCATGGCCTGTTTCGGTGGATAATGTCACAACATTTGACATTCTTTCAGGTAACTCAGTGTCATGCCCACACCTTAGTGGCATTGCAGCCTTGATCAAGAGTTCACACCCGGACTGGTCACCAGCTGCCATCAAATCCTCCATTATGACAACCGCTGATCTGCTAAACCTCGAAGGCACGCCAATTGTTGATAGATCAACTATCCCAGCAGACATCTATAGCATTGGCTCAGGCCATGTCAACCTTTCAAAAGCCAATGACCCGGGGCTCATCTATGACATAAAACCAGAAGATTACATTCCTTACTTGTGTGGTCTGAACTACACAGACAATCAAATAGAGATGATCACCCAACAAAGAGTGGACTGCTCTGAAGTAGGAGTCACAGCTGAAGCGCAGCTAAACTATCCTTCATTTTCTATCACAATAGGGTCCTATCAAACTCAGAATTACACAAGAACTGTGACAAATGTTGGCCCGGCTAATTCAACCTACAAATCGAAGATTTTGAAACCCCAGAAATGGGGTGTGAGTGTGAACATAGGTGTGACTCCTTCGGTGCTTACATTCACAGAGGTTAACCAGACCATTACATACAATGTGGAGTTCTCCACACAACTAGCTGGGCAAGATGGTTCATTTTCACAGGGATATTTGAGATGGCTTTCTGACATGTATTCTGTATACAGCCCCATAGCTGTCATCTTTCACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

425

Amino Acids

45.53

Weight (kDa)

5.21

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	44 - 128	1e-11	PA domain
Peptidase_S8	PF00082	138 - 241	2.5e-14	Subtilase family
fn3_6	PF17766	320 - 421	1.2e-23	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	1245
AccII	CGCG	1 cut(s)	19
AciI	CCGC	1 cut(s)	714
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	3 cut(s)	41, 107, 516
AcuI	CTGAAG	2 cut(s)	954, 972
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	1083, 1084
AflIII	ACRYGT	1 cut(s)	1233
AgsI	TTSAA	5 cut(s)	203, 371, 810, 1050, 1072
AjnI	CCWGG	1 cut(s)	142
AjuI	GAANNNNNNNTTGG	2 cut(s)	460, 492
AleI	CACNNNNGTG	1 cut(s)	636
AluBI	AGCT	9 cut(s)	53, 61, 332, 506, 686, 950, 961, 1184, 1259
AluI	AGCT	9 cut(s)	53, 61, 332, 506, 686, 950, 961, 1184, 1259
AlwI	GGATC	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	823
AoxI	GGCC	5 cut(s)	72, 509, 566, 793, 1036
ApeKI	GCWGC	4 cut(s)	284, 647, 686, 958
ApoI	RAATTY	3 cut(s)	41, 107, 516
AspLEI	GCGC	2 cut(s)	19, 958
AspS9I	GGNCC	5 cut(s)	73, 494, 510, 993, 1037
AsuC2I	CCSGG	5 cut(s)	513, 671, 824, 825, 1040
AsuHPI	GGTGA	3 cut(s)	111, 672, 901
AsuII	TTCGAA	1 cut(s)	33
AvaI	CYCGRG	1 cut(s)	823
AvaII	GGWCC	2 cut(s)	494, 993
BanII	GRGCYC	1 cut(s)	831
BbvI	GCAGC	4 cut(s)	271, 659, 673, 970
BccI	CCATC	3 cut(s)	698, 1187, 1215
BcgI	CGANNNNNNTGC	2 cut(s)	430, 464
BciT130I	CCWGG	1 cut(s)	144
BclI	TGATCA	2 cut(s)	654, 906
BcnI	CCSGG	5 cut(s)	513, 671, 824, 825, 1040
BfaI	CTAG	3 cut(s)	296, 507, 1181
BfmI	CTRYAG	4 cut(s)	81, 319, 417, 778
BfuAI	ACCTGC	1 cut(s)	365
BisI	GCNGC	4 cut(s)	285, 648, 687, 959
BlsI	GCNGC	4 cut(s)	286, 649, 688, 960
Bme1390I	CCNGG	6 cut(s)	144, 513, 671, 824, 825, 1040
Bme18I	GGWCC	2 cut(s)	494, 993
BmeT110I	CYCGRG	1 cut(s)	823
BmgT120I	GGNCC	5 cut(s)	73, 494, 510, 993, 1037
BmiI	GGNNCC	1 cut(s)	994
BmrFI	CCNGG	6 cut(s)	144, 513, 671, 824, 825, 1040
BmsI	GCATC	3 cut(s)	325, 393, 445
Bpu10I	CCTNAGC	2 cut(s)	328, 790
Bpu14I	TTCGAA	1 cut(s)	33
BpuMI	CCSGG	5 cut(s)	513, 671, 824, 825, 1040
BsaJI	CCNNGG	3 cut(s)	180, 823, 824
Bsc4I	CCNNNNNNNGG	2 cut(s)	1083, 1084
Bse1I	ACTGG	1 cut(s)	680
Bse3DI	GCAATG	2 cut(s)	122, 642
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	3 cut(s)	180, 823, 824
BseGI	GGATG	1 cut(s)	552
BseLI	CCNNNNNNNGG	2 cut(s)	1083, 1084
BseMI	GCAATG	2 cut(s)	122, 642
BseMII	CTCAG	4 cut(s)	159, 630, 804, 1019
BseNI	ACTGG	1 cut(s)	680
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	4 cut(s)	271, 659, 673, 970
BseYI	CCCAGC	2 cut(s)	766, 1184
Bsh1236I	CGCG	1 cut(s)	19
BshFI	GGCC	5 cut(s)	74, 511, 568, 795, 1038
BsiHKCI	CYCGRG	1 cut(s)	823
BsiSI	CCGG	4 cut(s)	513, 671, 824, 1040
BslI	CCNNNNNNNGG	2 cut(s)	1083, 1084
BsnI	GGCC	5 cut(s)	74, 511, 568, 795, 1038
BsoBI	CYCGRG	1 cut(s)	823
Bsp119I	TTCGAA	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	831
Bsp143I	GATC	5 cut(s)	185, 654, 718, 755, 906
BspACI	CCGC	1 cut(s)	714
BspANI	GGCC	5 cut(s)	74, 511, 568, 795, 1038
BspCNI	CTCAG	4 cut(s)	160, 629, 803, 1018
BspFNI	CGCG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	994
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	193
BspT104I	TTCGAA	1 cut(s)	33
BsrDI	GCAATG	2 cut(s)	122, 642
BsrI	ACTGG	1 cut(s)	680
BssECI	CCNNGG	3 cut(s)	180, 823, 824
BssMI	GATC	5 cut(s)	185, 654, 718, 755, 906
BssNAI	GTATAC	1 cut(s)	1246
BssT1I	CCWWGG	1 cut(s)	180
Bst1107I	GTATAC	1 cut(s)	1246
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	427, 1024
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	740
BstDEI	CTNAG	6 cut(s)	168, 328, 616, 635, 790, 1005
BstEII	GGTNACC	1 cut(s)	678
BstF5I	GGATG	1 cut(s)	552
BstFNI	CGCG	1 cut(s)	19
BstHHI	GCGC	2 cut(s)	19, 958
BstKTI	GATC	5 cut(s)	188, 657, 721, 758, 909
BstMBI	GATC	5 cut(s)	185, 654, 718, 755, 906
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 25, 281
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	1237
BstPI	GGTNACC	1 cut(s)	678
BstSCI	CCNGG	6 cut(s)	142, 511, 669, 822, 823, 1038
BstSFI	CTRYAG	4 cut(s)	81, 319, 417, 778
BstUI	CGCG	1 cut(s)	19
BstV1I	GCAGC	4 cut(s)	271, 659, 673, 970
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BstZ17I	GTATAC	1 cut(s)	1246
BsuRI	GGCC	5 cut(s)	74, 511, 568, 795, 1038
BtsCI	GGATG	1 cut(s)	552
BtsIMutI	CAGTG	3 cut(s)	309, 441, 624
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	1 cut(s)	740
CfoI	GCGC	2 cut(s)	19, 958
Cfr13I	GGNCC	5 cut(s)	73, 494, 510, 993, 1037
Cfr9I	CCCGGG	1 cut(s)	823
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	7 cut(s)	90, 289, 341, 564, 624, 797, 1234
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	6 cut(s)	168, 328, 616, 635, 790, 1005
DpnI	GATC	5 cut(s)	187, 656, 720, 757, 908
DpnII	GATC	5 cut(s)	185, 654, 718, 755, 906
DraI	TTTAAA	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	831
Eco47I	GGWCC	2 cut(s)	494, 993
Eco57I	CTGAAG	2 cut(s)	954, 972
Eco88I	CYCGRG	1 cut(s)	823
Eco91I	GGTNACC	1 cut(s)	678
EcoO109I	RGGNCCY	1 cut(s)	993
EcoO65I	GGTNACC	1 cut(s)	678
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	831
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	7 cut(s)	93, 292, 344, 567, 627, 800, 1237
FatI	CATG	7 cut(s)	89, 288, 340, 563, 623, 796, 1233
FbaI	TGATCA	2 cut(s)	654, 906
FblI	GTMKAC	1 cut(s)	1245
Fnu4HI	GCNGC	4 cut(s)	285, 648, 687, 959
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	1 cut(s)	831
Fsp4HI	GCNGC	4 cut(s)	285, 648, 687, 959
FspBI	CTAG	3 cut(s)	296, 507, 1181
GlaI	GCGC	2 cut(s)	18, 957
GluI	GCNGC	4 cut(s)	285, 648, 687, 959
GsaI	CCCAGC	2 cut(s)	770, 1188
HaeIII	GGCC	5 cut(s)	74, 511, 568, 795, 1038
HapII	CCGG	4 cut(s)	513, 671, 824, 1040
HhaI	GCGC	2 cut(s)	19, 958
Hin1II	CATG	7 cut(s)	93, 292, 344, 567, 627, 800, 1237
Hin6I	GCGC	2 cut(s)	17, 956
HinP1I	GCGC	2 cut(s)	17, 956
HincII	GTYRAC	3 cut(s)	550, 802, 1141
HindII	GTYRAC	3 cut(s)	550, 802, 1141
HinfI	GANTC	3 cut(s)	292, 942, 1111
HpaI	GTTAAC	2 cut(s)	550, 1141
HpaII	CCGG	4 cut(s)	513, 671, 824, 1040
HphI	GGTGA	3 cut(s)	111, 672, 901
Hpy166II	GTNNAC	8 cut(s)	301, 550, 665, 802, 925, 1099, 1141, 1246
Hpy188I	TCNGA	5 cut(s)	452, 879, 934, 1008, 1231
Hpy188III	TCNNGA	2 cut(s)	489, 658
Hpy8I	GTNNAC	8 cut(s)	301, 550, 665, 802, 925, 1099, 1141, 1246
HpyAV	CCTTC	4 cut(s)	197, 728, 981, 1125
HpyCH4III	ACNGT	2 cut(s)	427, 1024
HpyCH4V	TGCA	4 cut(s)	149, 458, 563, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 25, 281
HpyF3I	CTNAG	6 cut(s)	168, 328, 616, 635, 790, 1005
Hsp92II	CATG	7 cut(s)	93, 292, 344, 567, 627, 800, 1237
HspAI	GCGC	2 cut(s)	17, 956
Ksp22I	TGATCA	2 cut(s)	654, 906
KspAI	GTTAAC	2 cut(s)	550, 1141
Kzo9I	GATC	5 cut(s)	185, 654, 718, 755, 906
LmnI	GCTCC	2 cut(s)	25, 469
Lsp1109I	GCAGC	4 cut(s)	271, 659, 673, 970
LweI	GCATC	3 cut(s)	325, 393, 445
MaeI	CTAG	3 cut(s)	296, 507, 1181
MaeIII	GTNAC	6 cut(s)	586, 611, 678, 943, 1024, 1108
MalI	GATC	5 cut(s)	187, 656, 720, 757, 908
MboI	GATC	5 cut(s)	185, 654, 718, 755, 906
MboII	GAAGA	4 cut(s)	255, 272, 863, 1075
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	831
MluCI	AATT	8 cut(s)	29, 41, 107, 516, 534, 744, 1009, 1045
MlyI	GAGTC	2 cut(s)	951, 1105
MnlI	CCTC	9 cut(s)	93, 141, 221, 227, 272, 485, 709, 740, 1129
MseI	TTAA	4 cut(s)	521, 549, 1140, 1276
MslI	CAYNNNNRTG	2 cut(s)	636, 1106
MspA1I	CMGCKG	5 cut(s)	53, 61, 686, 716, 950
MspI	CCGG	4 cut(s)	513, 671, 824, 1040
MspR9I	CCNGG	6 cut(s)	144, 513, 671, 824, 825, 1040
MunI	CAATTG	1 cut(s)	744
MvaI	CCWGG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	19
MwoI	GCNNNNNNNGC	3 cut(s)	16, 25, 281
NciI	CCSGG	5 cut(s)	513, 671, 824, 825, 1040
NdeII	GATC	5 cut(s)	185, 654, 718, 755, 906
NlaIII	CATG	7 cut(s)	93, 292, 344, 567, 627, 800, 1237
NlaIV	GGNNCC	1 cut(s)	994
NmuCI	GTSAC	5 cut(s)	586, 678, 943, 1024, 1108
NspI	RCATGY	1 cut(s)	1237
NspV	TTCGAA	1 cut(s)	33
OliI	CACNNNNGTG	1 cut(s)	636
PciI	ACATGT	1 cut(s)	1233
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	4 cut(s)	286, 649, 688, 960
PleI	GAGTC	2 cut(s)	950, 1105
PpsI	GAGTC	2 cut(s)	950, 1105
PpuMI	RGGWCCY	1 cut(s)	993
PscI	ACATGT	1 cut(s)	1233
Psp5II	RGGWCCY	1 cut(s)	993
Psp6I	CCWGG	1 cut(s)	142
PspEI	GGTNACC	1 cut(s)	678
PspFI	CCCAGC	2 cut(s)	766, 1184
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	994
PspPI	GGNCC	5 cut(s)	73, 494, 510, 993, 1037
PspPPI	RGGWCCY	1 cut(s)	993
PsuI	RGATCY	1 cut(s)	185
PvuII	CAGCTG	4 cut(s)	53, 61, 686, 950
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
RseI	CAYNNNNRTG	2 cut(s)	636, 1106
SaqAI	TTAA	4 cut(s)	521, 549, 1140, 1276
SatI	GCNGC	4 cut(s)	285, 648, 687, 959
Sau3AI	GATC	5 cut(s)	185, 654, 718, 755, 906
Sau96I	GGNCC	5 cut(s)	73, 494, 510, 993, 1037
SchI	GAGTC	2 cut(s)	951, 1105
ScrFI	CCNGG	6 cut(s)	144, 513, 671, 824, 825, 1040
SduI	GDGCHC	1 cut(s)	831
SfaNI	GCATC	3 cut(s)	325, 393, 445
SfcI	CTRYAG	4 cut(s)	81, 319, 417, 778
SfuI	TTCGAA	1 cut(s)	33
SinI	GGWCC	2 cut(s)	494, 993
SmaI	CCCGGG	1 cut(s)	825
SmiMI	CAYNNNNRTG	2 cut(s)	636, 1106
Sse9I	AATT	8 cut(s)	29, 41, 107, 516, 534, 744, 1009, 1045
SsiI	CCGC	1 cut(s)	714
SspMI	CTAG	3 cut(s)	296, 507, 1181
StyD4I	CCNGG	6 cut(s)	142, 511, 669, 822, 823, 1038
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	427, 1024
TaqI	TCGA	3 cut(s)	33, 732, 1061
TaqII	GACCGA	1 cut(s)	511
TasI	AATT	8 cut(s)	29, 41, 107, 516, 534, 744, 1009, 1045
TatI	WGTACW	1 cut(s)	343
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	4 cut(s)	521, 549, 1140, 1276
Tru9I	TTAA	4 cut(s)	521, 549, 1140, 1276
TscAI	CASTG	3 cut(s)	316, 448, 624
TseFI	GTSAC	5 cut(s)	586, 678, 943, 1024, 1108
TseI	GCWGC	4 cut(s)	284, 647, 686, 958
Tsp45I	GTSAC	5 cut(s)	586, 678, 943, 1024, 1108
TspDTI	ATGAA	3 cut(s)	474, 963, 1188
TspMI	CCCGGG	1 cut(s)	823
TspRI	CASTG	3 cut(s)	316, 448, 624
VpaK11BI	GGWCC	2 cut(s)	494, 993
XapI	RAATTY	3 cut(s)	41, 107, 516
XceI	RCATGY	1 cut(s)	1237
XmaI	CCCGGG	1 cut(s)	823
XmiI	GTMKAC	1 cut(s)	1245
XspI	CTAG	3 cut(s)	296, 507, 1181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.