Prupe.1G496400_v2.0.a1

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
41156848 .. 41159851
3004 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G496400.1

Sequence Viewer

Length: 1401 bp
ATGCCGAAAAGAAAGGCTAAGCATTCTGGATGGACATATGGGAAACGACAAAAGATTCCAATCAATTTGGTTGATAAGGAAGAGAATTATTCGGAGGAGGATCAGATCAGTCAGCTACCGGATGTCATTCTAATCAGCATTCTTTCCCTATTGGGTATTAGGGATGCAGCAAGAACTTGTGTCCTCTCTAAGAGGTGGATCTATGTGTGGAAACAGATTACATGTCTCAACTTCGATGATATAGATGCATTATCCAAACCACAGAAGAAAAGAAGGCAACGAGTGAAAACAACATCTAGTTACAATTGGGTGAATCAAGTCTTGCAATTGCACCATGGTCCATCCTTAGATGAATTCAAAATTCGTTCTTCCTCACTCAATTGCAGTCCTAGTAGTTCTGAAATCGACAATTGGATTGAATTTGCAATGTGGAGGAGAGTTCAAGGCCTTGAGATAGATTTGGAAGCAGGCAGACGGTCTCGTTTTTCTTCTCCCAGTTATATCTTTCCAGATAAGCCATTTAGAAGCCCTTTTGGTATTTCCTGCATCAAGTCCCTTAAACACCTCTCTTTGTCCTTTGTAAATATAACCGGCGAACTTGTTGAGCACTTTCTATCCTACTGTGAACTCCTTGAGCATCTCTGCATTTCTTGCTCAGATCAATTAGTAAAATTGAAAGTTGCTGGTTCATCACTCCGGTTGAAGTTCCTACAAATAAGTGAGTGTACGTCTTTAGGATTAGTTGAGATTTGGGCTCCTAATCTCGTGTCATTTATTTATAAGGGAATGTTGGGTTATTGTGACAGTATTCGATTGAGGCATGCACCCTTGCTTGTTAATGTATCTCTTGCAGAAAGTACTAGGTCTATAATTGAACCTTTTCTTTCGGTTAAAAGTTGCATTCCTCAGCTGGTGACTCTCAACATGCACATGAATCTGAATTCGAGAGGAGGGGTGTGGCTCCCAGAATTTCCAGAATTTACTTGTCTCAAGGACTTATCGTTGAGTGTTATCGCAACTGATCGGCTAAGCCTCCTTGCTTTGACTAAACTGATAGAGCGGTCACCTTTCTTGCATAGATTTACATTGAAGTTAAGATGGGTACGTGACTCGTGTCAGAGGAATATGCAGAAGGTTAATAAATGTCCTCATCAGTGCCTTAAGGTGGTGAAATTTTCTGGGTTCGTTGGGTCTATTATCGACACTGAGCTTGCCACGTACTTCACTGAGAATGCCGTTGCGCTTGAGACGTTTATCATCGATCTCAAAAAGGTTGTCGTTGAAGAATCCACTCCATTGTCTGAATTTGTTACAACCCAGAAAAAAATGAGGGCAACAAGAAAGCGGGCCTTGCAGATTGGAGAAAAACTACCTCCAGGAGCTGAGTTAATTGTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

467

Amino Acids

53.2

Weight (kDa)

9.27

Isoelectric Point (pI)

57.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
AccBSI CCGCTC 1 cut(s) 1060
AciI CCGC 2 cut(s) 1060, 1345
AclWI GGATC 2 cut(s) 108, 206
AcsI RAATTY 8 cut(s) 353, 360, 419, 940, 968, 977, 1172, 1304
AfaI GTAC 4 cut(s) 727, 859, 1104, 1220
AfiI CCNNNNNNNGG 1 cut(s) 1165
AflII CTTAAG 1 cut(s) 1160
AflIII ACRYGT 1 cut(s) 221
AgsI TTSAA 8 cut(s) 358, 419, 443, 676, 703, 875, 1090, 1283
AjnI CCWGG 1 cut(s) 1375
AluBI AGCT 4 cut(s) 115, 910, 1210, 1382
AluI AGCT 4 cut(s) 115, 910, 1210, 1382
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 4 cut(s) 230, 483, 992, 1241
AlwI GGATC 2 cut(s) 108, 206
AlwNI CAGNNNCTG 1 cut(s) 1382
AoxI GGCC 2 cut(s) 445, 1347
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 8 cut(s) 353, 360, 419, 940, 968, 977, 1172, 1304
ArsI GACNNNNNNTTYG 2 cut(s) 1260, 1292
Asp700I GAANNNNTTC 1 cut(s) 879
AspLEI GCGC 1 cut(s) 1243
AspS9I GGNCC 2 cut(s) 338, 1347
AsuHPI GGTGA 4 cut(s) 322, 925, 1056, 1180
AvaII GGWCC 1 cut(s) 338
BanII GRGCYC 1 cut(s) 757
BauI CACGAG 2 cut(s) 764, 1111
Bbv12I GWGCWC 1 cut(s) 609
BbvCI CCTCAGC 1 cut(s) 906
BbvI GCAGC 1 cut(s) 179
BccI CCATC 3 cut(s) 24, 349, 1092
BceAI ACGGC 1 cut(s) 1220
BciT130I CCWGG 1 cut(s) 1377
BcoDI GTCTC 4 cut(s) 230, 483, 992, 1241
BfaI CTAG 3 cut(s) 297, 390, 861
BfrI CTTAAG 1 cut(s) 1160
BisI GCNGC 1 cut(s) 168
BlpI GCTNAGC 2 cut(s) 18, 1028
BlsI GCNGC 1 cut(s) 169
BmcAI AGTACT 1 cut(s) 859
Bme1390I CCNGG 1 cut(s) 1377
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 2 cut(s) 338, 1347
BmiI GGNNCC 2 cut(s) 756, 962
BmrFI CCNGG 1 cut(s) 1377
BmrI ACTGGG 1 cut(s) 489
BmsI GCATC 4 cut(s) 154, 235, 555, 646
BmuI ACTGGG 1 cut(s) 489
BoxI GACNNNNGTC 1 cut(s) 1113
BpmI CTGGAG 1 cut(s) 1359
Bpu10I CCTNAGC 1 cut(s) 906
Bpu1102I GCTNAGC 2 cut(s) 18, 1028
BpuEI CTTGAG 4 cut(s) 470, 653, 974, 1265
Bsa29I ATCGAT 1 cut(s) 1260
BsaAI YACGTR 2 cut(s) 1106, 1218
BsaBI GATNNNNATC 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 334
BsaWI WCCGGW 2 cut(s) 118, 696
Bsc4I CCNNNNNNNGG 1 cut(s) 1165
Bse118I RCCGGY 1 cut(s) 590
Bse1I ACTGG 1 cut(s) 495
Bse3DI GCAATG 1 cut(s) 432
Bse8I GATNNNNATC 1 cut(s) 59
BseBI CCWGG 1 cut(s) 1377
BseCI ATCGAT 1 cut(s) 1260
BseDI CCNNGG 1 cut(s) 334
BseGI GGATG 4 cut(s) 35, 127, 169, 341
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 1165
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 5 cut(s) 669, 920, 1197, 1218, 1374
BseNI ACTGG 1 cut(s) 495
BseRI GAGGAG 3 cut(s) 110, 448, 963
BseXI GCAGC 1 cut(s) 179
BshFI GGCC 2 cut(s) 447, 1349
BshVI ATCGAT 1 cut(s) 1260
BsiHKAI GWGCWC 1 cut(s) 609
BsiSI CCGG 3 cut(s) 119, 591, 697
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 1 cut(s) 1165
BsmAI GTCTC 4 cut(s) 230, 483, 992, 1241
BsmBI CGTCTC 1 cut(s) 1241
BsmFI GGGAC 1 cut(s) 538
BsmI GAATGC 4 cut(s) 22, 138, 900, 1237
BsnI GGCC 2 cut(s) 447, 1349
Bso31I GGTCTC 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 609, 757
Bsp143I GATC 6 cut(s) 100, 105, 198, 658, 1021, 1261
Bsp1720I GCTNAGC 2 cut(s) 18, 1028
Bsp19I CCATGG 1 cut(s) 334
BspACI CCGC 2 cut(s) 1060, 1345
BspANI GGCC 2 cut(s) 447, 1349
BspCNI CTCAG 5 cut(s) 668, 919, 1198, 1219, 1375
BspDI ATCGAT 1 cut(s) 1260
BspLI GGNNCC 2 cut(s) 756, 962
BspPI GGATC 2 cut(s) 108, 206
BspTI CTTAAG 1 cut(s) 1160
BspTNI GGTCTC 1 cut(s) 483
BsrBI CCGCTC 1 cut(s) 1060
BsrDI GCAATG 1 cut(s) 432
BsrFI RCCGGY 1 cut(s) 590
BsrI ACTGG 1 cut(s) 495
BssAI RCCGGY 1 cut(s) 590
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 6 cut(s) 100, 105, 198, 658, 1021, 1261
BssSI CACGAG 2 cut(s) 764, 1111
BssT1I CCWWGG 1 cut(s) 334
Bst2BI CACGAG 2 cut(s) 764, 1111
Bst2UI CCWGG 1 cut(s) 1377
Bst4CI ACNGT 3 cut(s) 477, 623, 806
Bst6I CTCTTC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 1160
BstAPI GCANNNNNTGC 1 cut(s) 651
BstBAI YACGTR 2 cut(s) 1106, 1218
BstC8I GCNNGC 4 cut(s) 469, 822, 1212, 1347
BstDEI CTNAG 9 cut(s) 18, 189, 346, 655, 906, 1028, 1206, 1227, 1383
BstDSI CCRYGG 1 cut(s) 334
BstEII GGTNACC 1 cut(s) 1062
BstF5I GGATG 4 cut(s) 35, 127, 169, 341
BstHHI GCGC 1 cut(s) 1243
BstKTI GATC 6 cut(s) 103, 108, 201, 661, 1024, 1264
BstMAI GTCTC 4 cut(s) 230, 483, 992, 1241
BstMBI GATC 6 cut(s) 100, 105, 198, 658, 1021, 1261
BstMWI GCNNNNNNNGC 2 cut(s) 651, 1351
BstNI CCWGG 1 cut(s) 1377
BstNSI RCATGY 3 cut(s) 225, 824, 928
BstPAI GACNNNNGTC 1 cut(s) 1113
BstPI GGTNACC 1 cut(s) 1062
BstSCI CCNGG 1 cut(s) 1375
BstV1I GCAGC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
Bsu15I ATCGAT 1 cut(s) 1260
BsuRI GGCC 2 cut(s) 447, 1349
BsuTUI ATCGAT 1 cut(s) 1260
BtgI CCRYGG 1 cut(s) 334
BtsCI GGATG 4 cut(s) 35, 127, 169, 341
BtsIMutI CAGTG 3 cut(s) 1160, 1203, 1224
Cac8I GCNNGC 4 cut(s) 469, 822, 1212, 1347
CaiI CAGNNNCTG 1 cut(s) 1382
CfoI GCGC 1 cut(s) 1243
Cfr10I RCCGGY 1 cut(s) 590
Cfr13I GGNCC 2 cut(s) 338, 1347
ClaI ATCGAT 1 cut(s) 1260
Csp6I GTAC 4 cut(s) 726, 858, 1103, 1219
CviAII CATG 5 cut(s) 222, 335, 821, 925, 931
CviQI GTAC 4 cut(s) 726, 858, 1103, 1219
DdeI CTNAG 9 cut(s) 18, 189, 346, 655, 906, 1028, 1206, 1227, 1383
DpnI GATC 6 cut(s) 102, 107, 200, 660, 1023, 1263
DpnII GATC 6 cut(s) 100, 105, 198, 658, 1021, 1261
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 757
Eco31I GGTCTC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 338
Eco91I GGTNACC 1 cut(s) 1062
EcoO65I GGTNACC 1 cut(s) 1062
EcoRI GAATTC 2 cut(s) 353, 940
EcoRII CCWGG 1 cut(s) 1375
EcoT14I CCWWGG 1 cut(s) 334
EcoT22I ATGCAT 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 757
ErhI CCWWGG 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 1241
FaeI CATG 5 cut(s) 225, 338, 824, 928, 934
FalI AAGNNNNNCTT 2 cut(s) 1334, 1366
FaqI GGGAC 1 cut(s) 538
FatI CATG 5 cut(s) 221, 334, 820, 924, 930
FauI CCCGC 1 cut(s) 1338
FauNDI CATATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 4 cut(s) 42, 134, 176, 328
FriOI GRGCYC 1 cut(s) 757
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 3 cut(s) 297, 390, 861
GlaI GCGC 1 cut(s) 1242
GluI GCNGC 1 cut(s) 168
GsuI CTGGAG 1 cut(s) 1359
HaeIII GGCC 2 cut(s) 447, 1349
HapII CCGG 3 cut(s) 119, 591, 697
HhaI GCGC 1 cut(s) 1243
Hin1II CATG 5 cut(s) 225, 338, 824, 928, 934
Hin6I GCGC 1 cut(s) 1241
HinP1I GCGC 1 cut(s) 1241
HinfI GANTC 6 cut(s) 55, 313, 916, 934, 1109, 1286
HpaII CCGG 3 cut(s) 119, 591, 697
HphI GGTGA 4 cut(s) 322, 925, 1056, 1180
Hpy166II GTNNAC 2 cut(s) 626, 726
Hpy188I TCNGA 7 cut(s) 94, 105, 400, 658, 939, 1119, 1303
Hpy188III TCNNGA 4 cut(s) 27, 509, 945, 974
Hpy8I GTNNAC 2 cut(s) 626, 726
HpyAV CCTTC 2 cut(s) 267, 1126
HpyCH4III ACNGT 3 cut(s) 477, 623, 806
HpyCH4IV ACGT 4 cut(s) 728, 1105, 1217, 1250
HpyF10VI GCNNNNNNNGC 2 cut(s) 651, 1351
HpyF3I CTNAG 9 cut(s) 18, 189, 346, 655, 906, 1028, 1206, 1227, 1383
HpySE526I ACGT 4 cut(s) 728, 1105, 1217, 1250
Hsp92II CATG 5 cut(s) 225, 338, 824, 928, 934
HspAI GCGC 1 cut(s) 1241
Kzo9I GATC 6 cut(s) 100, 105, 198, 658, 1021, 1261
LmnI GCTCC 3 cut(s) 760, 966, 1379
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 4 cut(s) 154, 235, 555, 646
MaeI CTAG 3 cut(s) 297, 390, 861
MaeII ACGT 4 cut(s) 728, 1105, 1217, 1250
MaeIII GTNAC 6 cut(s) 299, 800, 913, 1062, 1106, 1309
MalI GATC 6 cut(s) 102, 107, 200, 660, 1023, 1263
MbiI CCGCTC 1 cut(s) 1060
MboI GATC 6 cut(s) 100, 105, 198, 658, 1021, 1261
MboII GAAGA 5 cut(s) 92, 277, 360, 480, 1295
MfeI CAATTG 4 cut(s) 304, 326, 379, 409
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 2 cut(s) 609, 757
MlyI GAGTC 2 cut(s) 910, 1103
Mph1103I ATGCAT 1 cut(s) 250
MroXI GAANNNNTTC 1 cut(s) 879
MseI TTAA 7 cut(s) 558, 837, 891, 1094, 1137, 1161, 1388
MslI CAYNNNNRTG 1 cut(s) 929
MspA1I CMGCKG 1 cut(s) 910
MspCI CTTAAG 1 cut(s) 1160
MspI CCGG 3 cut(s) 119, 591, 697
MspR9I CCNGG 1 cut(s) 1377
MunI CAATTG 4 cut(s) 304, 326, 379, 409
Mva1269I GAATGC 4 cut(s) 22, 138, 900, 1237
MvaI CCWGG 1 cut(s) 1377
MwoI GCNNNNNNNGC 2 cut(s) 651, 1351
NcoI CCATGG 1 cut(s) 334
NdeI CATATG 1 cut(s) 37
NdeII GATC 6 cut(s) 100, 105, 198, 658, 1021, 1261
NlaIII CATG 5 cut(s) 225, 338, 824, 928, 934
NlaIV GGNNCC 2 cut(s) 756, 962
NmuCI GTSAC 4 cut(s) 800, 913, 1062, 1106
NsiI ATGCAT 1 cut(s) 250
NspI RCATGY 3 cut(s) 225, 824, 928
PaeI GCATGC 1 cut(s) 824
PceI AGGCCT 1 cut(s) 447
PciI ACATGT 1 cut(s) 221
PctI GAATGC 4 cut(s) 22, 138, 900, 1237
PdmI GAANNNNTTC 1 cut(s) 879
PfeI GAWTC 4 cut(s) 55, 313, 934, 1286
PfoI TCCNGGA 1 cut(s) 1375
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 2 cut(s) 910, 1103
PpsI GAGTC 2 cut(s) 910, 1103
Ppu21I YACGTR 2 cut(s) 1106, 1218
PscI ACATGT 1 cut(s) 221
PshAI GACNNNNGTC 1 cut(s) 1113
PsiI TTATAA 1 cut(s) 780
Psp6I CCWGG 1 cut(s) 1375
PspEI GGTNACC 1 cut(s) 1062
PspGI CCWGG 1 cut(s) 1375
PspN4I GGNNCC 2 cut(s) 756, 962
PspPI GGNCC 2 cut(s) 338, 1347
PstNI CAGNNNCTG 1 cut(s) 1382
PsuI RGATCY 1 cut(s) 198
PvuII CAGCTG 1 cut(s) 910
RsaI GTAC 4 cut(s) 727, 859, 1104, 1220
RsaNI GTAC 4 cut(s) 726, 858, 1103, 1219
RseI CAYNNNNRTG 1 cut(s) 929
SaqAI TTAA 7 cut(s) 558, 837, 891, 1094, 1137, 1161, 1388
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 6 cut(s) 100, 105, 198, 658, 1021, 1261
Sau96I GGNCC 2 cut(s) 338, 1347
ScaI AGTACT 1 cut(s) 859
SchI GAGTC 2 cut(s) 910, 1103
ScrFI CCNGG 1 cut(s) 1377
SduI GDGCHC 2 cut(s) 609, 757
SfaNI GCATC 4 cut(s) 154, 235, 555, 646
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 929
SmlI CTYRAG 5 cut(s) 449, 632, 989, 1160, 1244
SmoI CTYRAG 5 cut(s) 449, 632, 989, 1160, 1244
SphI GCATGC 1 cut(s) 824
SseBI AGGCCT 1 cut(s) 447
SsiI CCGC 2 cut(s) 1060, 1345
SspMI CTAG 3 cut(s) 297, 390, 861
StuI AGGCCT 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 1375
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 3 cut(s) 477, 623, 806
TaiI ACGT 4 cut(s) 731, 1108, 1220, 1253
TaqI TCGA 6 cut(s) 234, 405, 811, 944, 1200, 1260
TatI WGTACW 1 cut(s) 857
TfiI GAWTC 4 cut(s) 55, 313, 934, 1286
Tru1I TTAA 7 cut(s) 558, 837, 891, 1094, 1137, 1161, 1388
Tru9I TTAA 7 cut(s) 558, 837, 891, 1094, 1137, 1161, 1388
TscAI CASTG 3 cut(s) 1160, 1210, 1231
TseFI GTSAC 4 cut(s) 800, 913, 1062, 1106
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 4 cut(s) 800, 913, 1062, 1106
TspDTI ATGAA 3 cut(s) 366, 678, 947
TspRI CASTG 3 cut(s) 1160, 1210, 1231
Vha464I CTTAAG 1 cut(s) 1160
VpaK11BI GGWCC 1 cut(s) 338
XapI RAATTY 8 cut(s) 353, 360, 419, 940, 968, 977, 1172, 1304
XceI RCATGY 3 cut(s) 225, 824, 928
XmnI GAANNNNTTC 1 cut(s) 879
XspI CTAG 3 cut(s) 297, 390, 861
ZrmI AGTACT 1 cut(s) 859
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.