Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Forward (+)

24496764 .. 24499395

Gene Structure 2632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G257200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGTCTAAAGGGAAGGCCACTGATTTGCAGACTACTGAATGCACACGTCAAACAGAAGGACGTAAAATTGCAATCAATTTTGGCGACCATGATGAGAAGGAAGACAATTATTTGCTTGATGAGAAGGGAGATAATTATTTTATTGATTATACGAGAGATAATTACTTGTTTAAGGAGGAAGATGATGATGATGATGATGATGATTATTTTCTTGATGATGAGAAGGGAGATAATTATTCGGGGGAGGACCGGATTAGCGAGCTGCCAGACGAAATTCTAATTGCCATTGTTTCCCTCTTGGACACTTGGGAAGGAGGAAGAACTTGCGTAATCTCCAAGAGGTGGAGATTTTTGTGGGCAAGTGTTACATGTCTGAACTTTGATCGCAAGGAGTGGGAATTTACTGAGCCTCTCAGGAAACCATGCATTTGTGGTTTGTTTAAAATCTTGCAATCGCATCAGGGTTCAACCTTAGAGAGATTGAGGATTGGCTATTGCGATTTAGATAGCGAATGCTGTCGTTCTGATGTCGATAATTCGATCGAAAGTGCAATATTGCAGAAGAGAGTTCAAAGGCTTGAGATAGATGATGTTCGTTTTTCTAACGACCCTTACATCTTTCCAGAGAGGCCATTCAAAACCCCTTTTGGTGTTTCCTGCATCAAGTCCCTTACACACCTCAGCTTCAACAACACAAACATACATTCTCGAATTGTTTGCCACTTTCTATCTCACTGTCCACTTCTTGAGCACCTGTGTATTCGTCGCTCCTCTGAAATATATGTTTTGAAAGTCGTCGGTCCCTCTCTCCGGTTGAAGTTTCTGCAGATAAGCGACTGCCCTAGCGTAGTTAAAATCGAGATCTTTGCTCCTAATCTCTTGTCGTTTATCTACGACGGAAGAGGTCCATACAGAACAGGAATTGTTATGAAGCATGCACCCTCGCTTGTCATGCTATCTCTTGCAGAACCTTGTGATTGTATATCCAAAGCTTTTCGGTCGGTTTCAAGTTGTTTTTCTCGTCTGCAAACTCTCAGCCTGCGTATTGGTCTCGGACAAAGGAGTATTATGCTCCCAGAGTCTCCACAATTATCTAGTCTCAAAAAGCTATCTTTGGCGATACATATGGGACAAAATTCGAAAATCCTCATGGATTTGACTTCCTTGATAGAGCGATCTCCTTTCTTGCATAGATTGGAATTACGGTTAAAGTGGAGCGGTTTGTTTAGGTATTGTACGAGCAGTGTGCAGAAGATTAAAAAATGTCCTCATCCATGCCTTAAGGTTGTGAAAATTTCAGGCTTCATTGGGTCTCGTATGGATACTATGTTTGCCATGTACTTAATTGAGAACTCTCTTGTGCTCGAGAAGCTCATCTTTGATCTTCATAAGACTTATGATTTTCTGAGTCGGAAACAATACCTAAGTAGAAAGACAATCAAGAAGAAAATAGAGGCAACAAGAAAGCATGCTTTGCAGATTGGGAAGCAACTTCCACCAGGAGCCGAGTTAATTGTCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

508

Amino Acids

58.38

Weight (kDa)

8.0

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	342
AccBSI	CCGCTC	1 cut(s)	1218
AciI	CCGC	1 cut(s)	1218
AcsI	RAATTY	4 cut(s)	273, 398, 1135, 1293
AfaI	GTAC	2 cut(s)	1237, 1340
AfiI	CCNNNNNNNGG	2 cut(s)	342, 810
AflII	CTTAAG	1 cut(s)	1280
AflIII	ACRYGT	2 cut(s)	44, 368
AgsI	TTSAA	7 cut(s)	468, 572, 637, 688, 790, 817, 1008
AjiI	CACGTC	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	1498
AluBI	AGCT	5 cut(s)	262, 684, 992, 1108, 1372
AluI	AGCT	5 cut(s)	262, 684, 992, 1108, 1372
Alw21I	GWGCWC	2 cut(s)	753, 1365
Alw26I	GTCTC	4 cut(s)	1055, 1086, 1103, 1317
Ama87I	CYCGRG	1 cut(s)	1364
AoxI	GGCC	2 cut(s)	15, 629
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	4 cut(s)	273, 398, 1135, 1293
AspS9I	GGNCC	3 cut(s)	247, 800, 905
AsuII	TTCGAA	1 cut(s)	1139
AvaI	CYCGRG	1 cut(s)	1364
AvaII	GGWCC	3 cut(s)	247, 800, 905
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	2 cut(s)	753, 1365
BbvCI	CCTCAGC	1 cut(s)	680
BbvI	GCAGC	1 cut(s)	249
BcgI	CGANNNNNNTGC	6 cut(s)	699, 733, 848, 882, 1228, 1262
BciT130I	CCWGG	1 cut(s)	1500
BciVI	GTATCC	1 cut(s)	1315
BcoDI	GTCTC	4 cut(s)	1055, 1086, 1103, 1317
BfaI	CTAG	2 cut(s)	843, 1095
BfmI	CTRYAG	1 cut(s)	824
BfrI	CTTAAG	1 cut(s)	1280
BfuI	GTATCC	1 cut(s)	1315
BglII	AGATCT	1 cut(s)	861
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	1500
Bme18I	GGWCC	3 cut(s)	247, 800, 905
BmeT110I	CYCGRG	1 cut(s)	1364
BmgBI	CACGTC	1 cut(s)	47
BmgT120I	GGNCC	3 cut(s)	247, 800, 905
BmiI	GGNNCC	2 cut(s)	802, 1504
BmrFI	CCNGG	1 cut(s)	1500
BmsI	GCATC	2 cut(s)	466, 669
BpiI	GAAGAC	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	680
Bpu14I	TTCGAA	1 cut(s)	1139
BpuEI	CTTGAG	2 cut(s)	599, 767
BsaI	GGTCTC	2 cut(s)	1055, 1317
BsaWI	WCCGGW	2 cut(s)	249, 810
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 810
BseBI	CCWGG	1 cut(s)	1500
BseGI	GGATG	1 cut(s)	1270
BseLI	CCNNNNNNNGG	2 cut(s)	342, 810
BseMII	CTCAG	5 cut(s)	396, 427, 694, 1048, 1397
BseRI	GAGGAG	1 cut(s)	760
BseXI	GCAGC	1 cut(s)	249
BsgI	GTGCAG	1 cut(s)	1268
Bsh1285I	CGRYCG	2 cut(s)	543, 1001
BshFI	GGCC	2 cut(s)	17, 631
BsiEI	CGRYCG	2 cut(s)	543, 1001
BsiHKAI	GWGCWC	2 cut(s)	753, 1365
BsiHKCI	CYCGRG	1 cut(s)	1364
BsiSI	CCGG	2 cut(s)	250, 811
BslFI	GGGAC	3 cut(s)	652, 786, 1143
BslI	CCNNNNNNNGG	2 cut(s)	342, 810
BsmAI	GTCTC	4 cut(s)	1055, 1086, 1103, 1317
BsmFI	GGGAC	3 cut(s)	652, 786, 1143
BsmI	GAATGC	2 cut(s)	44, 518
BsnI	GGCC	2 cut(s)	17, 631
Bso31I	GGTCTC	2 cut(s)	1055, 1317
BsoBI	CYCGRG	1 cut(s)	1364
Bsp119I	TTCGAA	1 cut(s)	1139
Bsp1286I	GDGCHC	2 cut(s)	753, 1365
Bsp143I	GATC	5 cut(s)	382, 540, 861, 1175, 1381
BspACI	CCGC	1 cut(s)	1218
BspANI	GGCC	2 cut(s)	17, 631
BspCNI	CTCAG	5 cut(s)	397, 426, 693, 1047, 1398
BspLI	GGNNCC	2 cut(s)	802, 1504
BspMAI	CTGCAG	1 cut(s)	828
BspT104I	TTCGAA	1 cut(s)	1139
BspTI	CTTAAG	1 cut(s)	1280
BspTNI	GGTCTC	2 cut(s)	1055, 1317
BsrBI	CCGCTC	1 cut(s)	1218
BssMI	GATC	5 cut(s)	382, 540, 861, 1175, 1381
Bst2UI	CCWGG	1 cut(s)	1500
Bst4CI	ACNGT	2 cut(s)	737, 1206
Bst6I	CTCTTC	2 cut(s)	557, 895
BstAFI	CTTAAG	1 cut(s)	1280
BstAPI	GCANNNNNTGC	1 cut(s)	1474
BstBI	TTCGAA	1 cut(s)	1139
BstC8I	GCNNGC	4 cut(s)	260, 936, 1040, 1470
BstDEI	CTNAG	7 cut(s)	405, 413, 472, 680, 1034, 1406, 1424
BstF5I	GGATG	1 cut(s)	1270
BstKTI	GATC	5 cut(s)	385, 543, 864, 1178, 1384
BstMAI	GTCTC	4 cut(s)	1055, 1086, 1103, 1317
BstMBI	GATC	5 cut(s)	382, 540, 861, 1175, 1381
BstMCI	CGRYCG	2 cut(s)	543, 1001
BstMWI	GCNNNNNNNGC	3 cut(s)	952, 1369, 1474
BstNI	CCWGG	1 cut(s)	1500
BstNSI	RCATGY	3 cut(s)	372, 938, 1472
BstSCI	CCNGG	1 cut(s)	1498
BstSFI	CTRYAG	1 cut(s)	824
BstV1I	GCAGC	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	861
BstYI	RGATCY	1 cut(s)	861
BsuI	GTATCC	1 cut(s)	1315
BsuRI	GGCC	2 cut(s)	17, 631
BtrI	CACGTC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	1270
BtsI	GCAGTG	1 cut(s)	1249
BtsIMutI	CAGTG	3 cut(s)	18, 733, 1249
Cac8I	GCNNGC	4 cut(s)	260, 936, 1040, 1470
Cfr13I	GGNCC	3 cut(s)	247, 800, 905
Csp6I	GTAC	2 cut(s)	1236, 1339
CviAII	CATG	9 cut(s)	89, 369, 423, 935, 952, 1150, 1275, 1336, 1469
CviQI	GTAC	2 cut(s)	1236, 1339
DdeI	CTNAG	7 cut(s)	405, 413, 472, 680, 1034, 1406, 1424
DpnI	GATC	5 cut(s)	384, 542, 863, 1177, 1383
DpnII	GATC	5 cut(s)	382, 540, 861, 1175, 1381
DraI	TTTAAA	1 cut(s)	442
Eam1104I	CTCTTC	2 cut(s)	557, 895
EarI	CTCTTC	2 cut(s)	557, 895
Eco31I	GGTCTC	2 cut(s)	1055, 1317
Eco47I	GGWCC	3 cut(s)	247, 800, 905
Eco88I	CYCGRG	1 cut(s)	1364
EcoRII	CCWGG	1 cut(s)	1498
EcoT22I	ATGCAT	1 cut(s)	428
FaeI	CATG	9 cut(s)	92, 372, 426, 938, 955, 1153, 1278, 1339, 1472
FalI	AAGNNNNNCTT	2 cut(s)	1361, 1393
FaqI	GGGAC	3 cut(s)	652, 786, 1143
FatI	CATG	9 cut(s)	88, 368, 422, 934, 951, 1149, 1274, 1335, 1468
FauNDI	CATATG	1 cut(s)	1125
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	1 cut(s)	1257
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	2 cut(s)	843, 1095
GluI	GCNGC	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	17, 631
HapII	CCGG	2 cut(s)	250, 811
Hin1II	CATG	9 cut(s)	92, 372, 426, 938, 955, 1153, 1278, 1339, 1472
HindIII	AAGCTT	1 cut(s)	990
HinfI	GANTC	2 cut(s)	1079, 1408
HpaII	CCGG	2 cut(s)	250, 811
Hpy166II	GTNNAC	1 cut(s)	740
Hpy188I	TCNGA	6 cut(s)	375, 526, 775, 1055, 1407, 1413
Hpy188III	TCNNGA	8 cut(s)	212, 415, 623, 708, 746, 859, 1366, 1441
Hpy8I	GTNNAC	1 cut(s)	740
Hpy99I	CGWCG	3 cut(s)	768, 800, 899
HpyAV	CCTTC	6 cut(s)	7, 50, 91, 118, 217, 305
HpyCH4III	ACNGT	2 cut(s)	737, 1206
HpyCH4IV	ACGT	2 cut(s)	46, 61
HpyF10VI	GCNNNNNNNGC	3 cut(s)	952, 1369, 1474
HpyF3I	CTNAG	7 cut(s)	405, 413, 472, 680, 1034, 1406, 1424
HpySE526I	ACGT	2 cut(s)	46, 61
Hsp92II	CATG	9 cut(s)	92, 372, 426, 938, 955, 1153, 1278, 1339, 1472
Kzo9I	GATC	5 cut(s)	382, 540, 861, 1175, 1381
LmnI	GCTCC	5 cut(s)	773, 874, 1077, 1215, 1502
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	2 cut(s)	466, 669
MaeI	CTAG	2 cut(s)	843, 1095
MaeII	ACGT	2 cut(s)	46, 61
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	5 cut(s)	384, 542, 863, 1177, 1383
MbiI	CCGCTC	1 cut(s)	1218
MboI	GATC	5 cut(s)	382, 540, 861, 1175, 1381
MboII	GAAGA	8 cut(s)	113, 191, 330, 574, 912, 1264, 1376, 1456
MflI	RGATCY	1 cut(s)	861
MhlI	GDGCHC	2 cut(s)	753, 1365
MlyI	GAGTC	2 cut(s)	1088, 1417
MmeI	TCCRAC	1 cut(s)	1391
Mph1103I	ATGCAT	1 cut(s)	428
MseI	TTAA	8 cut(s)	171, 441, 852, 1208, 1257, 1281, 1343, 1511
MspCI	CTTAAG	1 cut(s)	1280
MspI	CCGG	2 cut(s)	250, 811
MspR9I	CCNGG	1 cut(s)	1500
Mva1269I	GAATGC	2 cut(s)	44, 518
MvaI	CCWGG	1 cut(s)	1500
MwoI	GCNNNNNNNGC	3 cut(s)	952, 1369, 1474
NdeI	CATATG	1 cut(s)	1125
NdeII	GATC	5 cut(s)	382, 540, 861, 1175, 1381
NlaIII	CATG	9 cut(s)	92, 372, 426, 938, 955, 1153, 1278, 1339, 1472
NlaIV	GGNNCC	2 cut(s)	802, 1504
NsiI	ATGCAT	1 cut(s)	428
NspI	RCATGY	3 cut(s)	372, 938, 1472
NspV	TTCGAA	1 cut(s)	1139
PaeI	GCATGC	2 cut(s)	938, 1472
PaeR7I	CTCGAG	1 cut(s)	1364
PciI	ACATGT	1 cut(s)	368
PctI	GAATGC	2 cut(s)	44, 518
PflMI	CCANNNNNTGG	1 cut(s)	342
PkrI	GCNGC	1 cut(s)	264
Ple19I	CGATCG	1 cut(s)	543
PleI	GAGTC	2 cut(s)	1087, 1416
PpsI	GAGTC	2 cut(s)	1087, 1416
PscI	ACATGT	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	1498
PspGI	CCWGG	1 cut(s)	1498
PspN4I	GGNNCC	2 cut(s)	802, 1504
PspPI	GGNCC	3 cut(s)	247, 800, 905
PstI	CTGCAG	1 cut(s)	828
PsuI	RGATCY	1 cut(s)	861
PvuI	CGATCG	1 cut(s)	543
RsaI	GTAC	2 cut(s)	1237, 1340
RsaNI	GTAC	2 cut(s)	1236, 1339
SaqAI	TTAA	8 cut(s)	171, 441, 852, 1208, 1257, 1281, 1343, 1511
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	5 cut(s)	382, 540, 861, 1175, 1381
Sau96I	GGNCC	3 cut(s)	247, 800, 905
SchI	GAGTC	2 cut(s)	1088, 1417
ScrFI	CCNGG	1 cut(s)	1500
SduI	GDGCHC	2 cut(s)	753, 1365
SfaNI	GCATC	2 cut(s)	466, 669
SfcI	CTRYAG	1 cut(s)	824
Sfr274I	CTCGAG	1 cut(s)	1364
SfuI	TTCGAA	1 cut(s)	1139
SinI	GGWCC	3 cut(s)	247, 800, 905
SlaI	CTCGAG	1 cut(s)	1364
SmlI	CTYRAG	4 cut(s)	578, 746, 1280, 1364
SmoI	CTYRAG	4 cut(s)	578, 746, 1280, 1364
SphI	GCATGC	2 cut(s)	938, 1472
SsiI	CCGC	1 cut(s)	1218
SspI	AATATT	1 cut(s)	555
SspMI	CTAG	2 cut(s)	843, 1095
StyD4I	CCNGG	1 cut(s)	1498
TaaI	ACNGT	2 cut(s)	737, 1206
TaiI	ACGT	2 cut(s)	49, 64
TaqI	TCGA	7 cut(s)	531, 539, 543, 709, 858, 1139, 1365
TaqII	GACCGA	2 cut(s)	788, 987
TatI	WGTACW	1 cut(s)	1338
Tru1I	TTAA	8 cut(s)	171, 441, 852, 1208, 1257, 1281, 1343, 1511
Tru9I	TTAA	8 cut(s)	171, 441, 852, 1208, 1257, 1281, 1343, 1511
TscAI	CASTG	3 cut(s)	25, 740, 1249
TseI	GCWGC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	944, 1294, 1376
TspGWI	ACGGA	1 cut(s)	912
TspRI	CASTG	3 cut(s)	25, 740, 1249
Van91I	CCANNNNNTGG	1 cut(s)	342
Vha464I	CTTAAG	1 cut(s)	1280
VpaK11BI	GGWCC	3 cut(s)	247, 800, 905
XapI	RAATTY	4 cut(s)	273, 398, 1135, 1293
XceI	RCATGY	3 cut(s)	372, 938, 1472
XhoI	CTCGAG	1 cut(s)	1364
XspI	CTAG	2 cut(s)	843, 1095
Zsp2I	ATGCAT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.