pycom02g09400

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
6462007 .. 6463941
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g09400.1

Sequence Viewer

Length: 1350 bp
ATGTTACAAGTCTCAACTTTATCGATCGATCATCATGATGGTGAACATCCACGTACCTCCACAAGGACCACAACAGTTAATCGGTCAGAGAGACGTCGTCTGGAAGAAGCGACAAACAGAAGACAACGAATCCGGCAATTGCGCCAGGGTTTAACACCTTTAAACTTAGGTGAATGCAGAGGTGGTTCTTCCTCAGCGGGTTCCGGTTCAAGATCTAGGCACCCCGATGGGATTCCAAGACTAATTCGCCCACCATCACCACCACCGTGTACGGTGGTAACTAAAGTCCTGCGATCGCATCAGGGTCCAACCGTAGATGGAGTCAGAATTTGTGCATCTTGTTATAGCTCGGATAATGTCGATGATTTTATCGAATTTGCAATTCTAAAGGAAATTCAAAGGCTTGAGATAGACAAATCAATAGAAAAAGACGCCAAGTCTTGGGAGAAGCCTTTCAACAACCCTTTTGGTGTTTCACGCATTAAGTCCCTCAGACACCTCTCTTTGAAGTACATACCTATAACTGATGAAGTTGTTGGGCTGGTTCTATCCGAATGTCAACTTCTTGAACACCTCAGTATTTGTCGCTCAAGCGATCTTTATGCTGTTAAAGCAGTTGGTTCATCACTCCGGTTGAAGTTCCTACAAATAAGTTATTGCGGTGGCATAGTCAGAGTTGATATTTCTGCCCCTAATCTTGTGTCATTTATATATCGCGGACAACATGTGTATAGAAGAGGAATTGTTTTGAAACATGCACCCAAACTCGTTGACGTATCTCTCTCTGAAGACGAACCTGATAGCATTACCAAACATCTTCTATCGATATCAGCTCGACTTTCATATCTACAGACTCTCCACCTGTGGATGAATCTGAGAAGGACAAATGTTGTGCTTCCACAATTTCCCGAATTAACTAGTCTCAAAGACTTGTCGTTGACTGTACATGCCAAAAATGGTGGGCAAAGTCTCCTGGATATGACTTCCTTGTTAGAGCAATCTCCCTTCTTGCAGAGATTAACATTCCAGATACAATGGGGACTTGTTTGCGAGGGCGTTACCAGAAACATGCAGGAGATTAAAAGATGTCCTCATCAATGCCTTAAGGAGGTGAGATTTTCTGGGTTCATTGGGATGGGCGGGTCAATTATCGATACGGAGTTTGCCATGTATCTGGTGGAAAATGCTGTGGTACTTGAAAAGTTTATCATCGAACTTGAAAAGGTCAAATTAGCTTATAGACTGCTAGAGTTTGCTACAACGGAGGAGAAATTAGAAGCAACAAAGGAGCATGCTTTGCAGCTAATTGGAACACGATTACCTCCAGGAGCTGAGTTGTTTATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

450

Amino Acids

50.6

Weight (kDa)

9.01

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 147 - 256 5.3e-07 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 152 - 408 6.8e-22 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 219
AccB7I CCANNNNNTGG 1 cut(s) 441
AccII CGCG 1 cut(s) 717
AciI CCGC 4 cut(s) 197, 660, 717, 1140
AcsI RAATTY 3 cut(s) 327, 374, 393
AcuI CTGAAG 1 cut(s) 807
AcyI GRCGYC 2 cut(s) 94, 432
AfaI GTAC 5 cut(s) 55, 271, 512, 945, 1194
AfiI CCNNNNNNNGG 3 cut(s) 63, 441, 1108
AflII CTTAAG 1 cut(s) 1103
AflIII ACRYGT 1 cut(s) 724
AgsI TTSAA 9 cut(s) 210, 398, 457, 508, 569, 637, 751, 1199, 1220
AhdI GACNNNNNGTC 1 cut(s) 436
AhlI ACTAGT 1 cut(s) 917
AjnI CCWGG 3 cut(s) 144, 972, 1324
AleI CACNNNNGTG 1 cut(s) 265
AluBI AGCT 5 cut(s) 348, 833, 1235, 1303, 1331
AluI AGCT 5 cut(s) 348, 833, 1235, 1303, 1331
Alw26I GTCTC 4 cut(s) 16, 85, 926, 974
AlwNI CAGNNNCTG 1 cut(s) 1331
ApeKI GCWGC 1 cut(s) 1300
ApoI RAATTY 3 cut(s) 327, 374, 393
AsiSI GCGATCGC 1 cut(s) 296
Asp700I GAANNNNTTC 1 cut(s) 452
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 2 cut(s) 66, 305
AsuHPI GGTGA 4 cut(s) 53, 182, 249, 1123
AvaII GGWCC 2 cut(s) 66, 305
BanI GGYRCC 1 cut(s) 219
BbsI GAAGAC 2 cut(s) 127, 795
BbvCI CCTCAGC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 1312
BccI CCATC 5 cut(s) 32, 221, 262, 311, 1129
BcgI CGANNNNNNTGC 2 cut(s) 584, 618
BciT130I CCWGG 3 cut(s) 146, 974, 1326
BcoDI GTCTC 4 cut(s) 16, 85, 926, 974
BcuI ACTAGT 1 cut(s) 917
BfaI CTAG 3 cut(s) 216, 918, 1247
BfmI CTRYAG 1 cut(s) 848
BfrI CTTAAG 1 cut(s) 1103
BglII AGATCT 1 cut(s) 212
BisI GCNGC 1 cut(s) 1301
BlsI GCNGC 1 cut(s) 1302
Bme1390I CCNGG 3 cut(s) 146, 974, 1326
Bme18I GGWCC 2 cut(s) 66, 305
BmeRI GACNNNNNGTC 1 cut(s) 436
BmgT120I GGNCC 2 cut(s) 66, 305
BmiI GGNNCC 3 cut(s) 202, 221, 306
BmrFI CCNGG 3 cut(s) 146, 974, 1326
BmsI GCATC 2 cut(s) 307, 344
BpiI GAAGAC 2 cut(s) 127, 795
BpmI CTGGAG 1 cut(s) 1308
Bpu10I CCTNAGC 1 cut(s) 193
BpuEI CTTGAG 2 cut(s) 425, 574
Bsa29I ATCGAT 4 cut(s) 23, 27, 824, 1152
BsaAI YACGTR 1 cut(s) 53
BsaHI GRCGYC 2 cut(s) 94, 432
BsaJI CCNNGG 1 cut(s) 145
BsaWI WCCGGW 2 cut(s) 203, 630
BsaXI ACNNNNNCTCC 2 cut(s) 840, 870
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 441, 1108
BseBI CCWGG 3 cut(s) 146, 974, 1326
BseCI ATCGAT 4 cut(s) 23, 27, 824, 1152
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 3 cut(s) 46, 873, 1140
BseLI CCNNNNNNNGG 3 cut(s) 63, 441, 1108
BseMII CTCAG 5 cut(s) 207, 505, 589, 866, 1323
BseRI GAGGAG 1 cut(s) 1280
BseXI GCAGC 1 cut(s) 1312
Bsh1236I CGCG 1 cut(s) 717
Bsh1285I CGRYCG 2 cut(s) 27, 296
BshNI GGYRCC 1 cut(s) 219
BshVI ATCGAT 4 cut(s) 23, 27, 824, 1152
BsiEI CGRYCG 2 cut(s) 27, 296
BsiSI CCGG 3 cut(s) 133, 204, 631
BslFI GGGAC 2 cut(s) 472, 1053
BslI CCNNNNNNNGG 3 cut(s) 63, 441, 1108
BsmAI GTCTC 4 cut(s) 16, 85, 926, 974
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 2 cut(s) 472, 1053
BsmI GAATGC 1 cut(s) 179
Bsp1407I TGTACA 1 cut(s) 943
Bsp143I GATC 5 cut(s) 24, 28, 212, 293, 595
BspACI CCGC 4 cut(s) 197, 660, 717, 1140
BspCNI CTCAG 5 cut(s) 206, 504, 588, 867, 1324
BspDI ATCGAT 4 cut(s) 23, 27, 824, 1152
BspFNI CGCG 1 cut(s) 717
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 3 cut(s) 202, 221, 306
BspT107I GGYRCC 1 cut(s) 219
BspTI CTTAAG 1 cut(s) 1103
BsrGI TGTACA 1 cut(s) 943
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 5 cut(s) 24, 28, 212, 293, 595
BssNI GRCGYC 2 cut(s) 94, 432
Bst2UI CCWGG 3 cut(s) 146, 974, 1326
Bst4CI ACNGT 5 cut(s) 76, 267, 274, 313, 943
Bst6I CTCTTC 1 cut(s) 730
BstACI GRCGYC 2 cut(s) 94, 432
BstAFI CTTAAG 1 cut(s) 1103
BstAPI GCANNNNNTGC 1 cut(s) 1297
BstAUI TGTACA 1 cut(s) 943
BstBAI YACGTR 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 1293
BstDEI CTNAG 6 cut(s) 166, 193, 491, 575, 875, 1332
BstENI CCTNNNNNAGG 2 cut(s) 61, 1106
BstF5I GGATG 3 cut(s) 46, 873, 1140
BstFNI CGCG 1 cut(s) 717
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 5 cut(s) 27, 31, 215, 296, 598
BstMAI GTCTC 4 cut(s) 16, 85, 926, 974
BstMBI GATC 5 cut(s) 24, 28, 212, 293, 595
BstMCI CGRYCG 2 cut(s) 27, 296
BstMWI GCNNNNNNNGC 2 cut(s) 611, 1297
BstNI CCWGG 3 cut(s) 146, 974, 1326
BstNSI RCATGY 5 cut(s) 728, 758, 950, 1072, 1295
BstSCI CCNGG 3 cut(s) 144, 972, 1324
BstSFI CTRYAG 1 cut(s) 848
BstUI CGCG 1 cut(s) 717
BstV1I GCAGC 1 cut(s) 1312
BstV2I GAAGAC 2 cut(s) 127, 795
BstX2I RGATCY 1 cut(s) 212
BstXI CCANNNNNNTGG 1 cut(s) 1174
BstYI RGATCY 1 cut(s) 212
Bsu15I ATCGAT 4 cut(s) 23, 27, 824, 1152
BsuTUI ATCGAT 4 cut(s) 23, 27, 824, 1152
BtsCI GGATG 3 cut(s) 46, 873, 1140
Cac8I GCNNGC 1 cut(s) 1293
CaiI CAGNNNCTG 1 cut(s) 1331
CciI TCATGA 1 cut(s) 34
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 66, 305
ClaI ATCGAT 4 cut(s) 23, 27, 824, 1152
CseI GACGC 1 cut(s) 440
Csp6I GTAC 5 cut(s) 54, 270, 511, 944, 1193
CspCI CAANNNNNGTGG 2 cut(s) 940, 975
CviAII CATG 7 cut(s) 35, 725, 755, 947, 1069, 1168, 1292
CviJI RGCY 8 cut(s) 348, 403, 451, 541, 833, 1235, 1303, 1331
CviKI_1 RGCY 8 cut(s) 348, 403, 451, 541, 833, 1235, 1303, 1331
CviQI GTAC 5 cut(s) 54, 270, 511, 944, 1193
DdeI CTNAG 6 cut(s) 166, 193, 491, 575, 875, 1332
DpnI GATC 5 cut(s) 26, 30, 214, 295, 597
DpnII GATC 5 cut(s) 24, 28, 212, 293, 595
DraI TTTAAA 1 cut(s) 162
DriI GACNNNNNGTC 1 cut(s) 436
Eam1104I CTCTTC 1 cut(s) 730
Eam1105I GACNNNNNGTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 730
Eco32I GATATC 1 cut(s) 828
Eco47I GGWCC 2 cut(s) 66, 305
Eco57I CTGAAG 1 cut(s) 807
EcoNI CCTNNNNNAGG 2 cut(s) 61, 1106
EcoRII CCWGG 3 cut(s) 144, 972, 1324
EcoRV GATATC 1 cut(s) 828
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 7 cut(s) 38, 728, 758, 950, 1072, 1171, 1295
FaqI GGGAC 2 cut(s) 472, 1053
FatI CATG 7 cut(s) 34, 724, 754, 946, 1068, 1167, 1291
FauI CCCGC 2 cut(s) 190, 1133
Fnu4HI GCNGC 1 cut(s) 1301
FokI GGATG 3 cut(s) 33, 880, 1147
Fsp4HI GCNGC 1 cut(s) 1301
FspBI CTAG 3 cut(s) 216, 918, 1247
GlaI GCGC 1 cut(s) 143
GluI GCNGC 1 cut(s) 1301
GsuI CTGGAG 1 cut(s) 1308
HapII CCGG 3 cut(s) 133, 204, 631
HgaI GACGC 1 cut(s) 440
HhaI GCGC 1 cut(s) 144
Hin1I GRCGYC 2 cut(s) 94, 432
Hin1II CATG 7 cut(s) 38, 728, 758, 950, 1072, 1171, 1295
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HincII GTYRAC 3 cut(s) 560, 772, 939
HindII GTYRAC 3 cut(s) 560, 772, 939
HinfI GANTC 5 cut(s) 129, 232, 321, 853, 871
HpaII CCGG 3 cut(s) 133, 204, 631
HphI GGTGA 4 cut(s) 53, 182, 249, 1123
Hpy166II GTNNAC 5 cut(s) 44, 270, 560, 772, 939
Hpy188I TCNGA 8 cut(s) 88, 326, 352, 494, 553, 674, 787, 876
Hpy188III TCNNGA 6 cut(s) 35, 101, 210, 566, 908, 1027
Hpy8I GTNNAC 5 cut(s) 44, 270, 560, 772, 939
Hpy99I CGWCG 1 cut(s) 99
HpyAV CCTTC 2 cut(s) 873, 1015
HpyCH4III ACNGT 5 cut(s) 76, 267, 274, 313, 943
HpyCH4IV ACGT 3 cut(s) 52, 94, 774
HpyCH4V TGCA 7 cut(s) 177, 335, 380, 758, 1012, 1072, 1300
HpyF10VI GCNNNNNNNGC 2 cut(s) 611, 1297
HpyF3I CTNAG 6 cut(s) 166, 193, 491, 575, 875, 1332
HpySE526I ACGT 3 cut(s) 52, 94, 774
Hsp92I GRCGYC 2 cut(s) 94, 432
Hsp92II CATG 7 cut(s) 38, 728, 758, 950, 1072, 1171, 1295
HspAI GCGC 1 cut(s) 142
Kzo9I GATC 5 cut(s) 24, 28, 212, 293, 595
LmnI GCTCC 2 cut(s) 1288, 1328
Lsp1109I GCAGC 1 cut(s) 1312
LweI GCATC 2 cut(s) 307, 344
MaeI CTAG 3 cut(s) 216, 918, 1247
MaeII ACGT 3 cut(s) 52, 94, 774
MaeIII GTNAC 3 cut(s) 3, 277, 1057
MalI GATC 5 cut(s) 26, 30, 214, 295, 597
MboI GATC 5 cut(s) 24, 28, 212, 293, 595
MboII GAAGA 6 cut(s) 116, 132, 180, 747, 800, 809
MfeI CAATTG 1 cut(s) 137
MflI RGATCY 1 cut(s) 212
MlyI GAGTC 2 cut(s) 330, 847
MmeI TCCRAC 1 cut(s) 332
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 9 cut(s) 78, 152, 161, 483, 609, 914, 1019, 1080, 1104
MslI CAYNNNNRTG 5 cut(s) 36, 39, 225, 265, 1133
MspA1I CMGCKG 1 cut(s) 197
MspCI CTTAAG 1 cut(s) 1103
MspI CCGG 3 cut(s) 133, 204, 631
MspR9I CCNGG 3 cut(s) 146, 974, 1326
MunI CAATTG 1 cut(s) 137
Mva1269I GAATGC 1 cut(s) 179
MvaI CCWGG 3 cut(s) 146, 974, 1326
MvnI CGCG 1 cut(s) 717
MwoI GCNNNNNNNGC 2 cut(s) 611, 1297
NdeII GATC 5 cut(s) 24, 28, 212, 293, 595
NlaIII CATG 7 cut(s) 38, 728, 758, 950, 1072, 1171, 1295
NlaIV GGNNCC 3 cut(s) 202, 221, 306
NspI RCATGY 5 cut(s) 728, 758, 950, 1072, 1295
OliI CACNNNNGTG 1 cut(s) 265
PaeI GCATGC 1 cut(s) 1295
PagI TCATGA 1 cut(s) 34
PciI ACATGT 1 cut(s) 724
PctI GAATGC 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 3 cut(s) 129, 232, 871
PflFI GACNNNGTC 1 cut(s) 96
PflMI CCANNNNNTGG 1 cut(s) 441
PfoI TCCNGGA 2 cut(s) 972, 1324
PkrI GCNGC 1 cut(s) 1302
Ple19I CGATCG 2 cut(s) 27, 296
PleI GAGTC 2 cut(s) 329, 847
PpsI GAGTC 2 cut(s) 329, 847
Ppu21I YACGTR 1 cut(s) 53
PscI ACATGT 1 cut(s) 724
Psp6I CCWGG 3 cut(s) 144, 972, 1324
PspGI CCWGG 3 cut(s) 144, 972, 1324
PspN4I GGNNCC 3 cut(s) 202, 221, 306
PspPI GGNCC 2 cut(s) 66, 305
PstNI CAGNNNCTG 1 cut(s) 1331
PsuI RGATCY 1 cut(s) 212
PsyI GACNNNGTC 1 cut(s) 96
PvuI CGATCG 2 cut(s) 27, 296
RgaI GCGATCGC 1 cut(s) 296
RsaI GTAC 5 cut(s) 55, 271, 512, 945, 1194
RsaNI GTAC 5 cut(s) 54, 270, 511, 944, 1193
RseI CAYNNNNRTG 5 cut(s) 36, 39, 225, 265, 1133
SaqAI TTAA 9 cut(s) 78, 152, 161, 483, 609, 914, 1019, 1080, 1104
SatI GCNGC 1 cut(s) 1301
Sau3AI GATC 5 cut(s) 24, 28, 212, 293, 595
Sau96I GGNCC 2 cut(s) 66, 305
SchI GAGTC 2 cut(s) 330, 847
ScrFI CCNGG 3 cut(s) 146, 974, 1326
SfaAI GCGATCGC 1 cut(s) 296
SfaNI GCATC 2 cut(s) 307, 344
SfcI CTRYAG 1 cut(s) 848
SgfI GCGATCGC 1 cut(s) 296
SinI GGWCC 2 cut(s) 66, 305
SmiMI CAYNNNNRTG 5 cut(s) 36, 39, 225, 265, 1133
SmlI CTYRAG 3 cut(s) 404, 589, 1103
SmoI CTYRAG 3 cut(s) 404, 589, 1103
SpeI ACTAGT 1 cut(s) 917
SphI GCATGC 1 cut(s) 1295
SsiI CCGC 4 cut(s) 197, 660, 717, 1140
SspMI CTAG 3 cut(s) 216, 918, 1247
StyD4I CCNGG 3 cut(s) 144, 972, 1324
TaaI ACNGT 5 cut(s) 76, 267, 274, 313, 943
TaiI ACGT 3 cut(s) 55, 97, 777
TaqI TCGA 8 cut(s) 23, 27, 360, 372, 824, 835, 1152, 1212
TaqII GACCGA 1 cut(s) 72
TatI WGTACW 2 cut(s) 510, 943
TfiI GAWTC 3 cut(s) 129, 232, 871
Tru1I TTAA 9 cut(s) 78, 152, 161, 483, 609, 914, 1019, 1080, 1104
Tru9I TTAA 9 cut(s) 78, 152, 161, 483, 609, 914, 1019, 1080, 1104
TseI GCWGC 1 cut(s) 1300
TspDTI ATGAA 5 cut(s) 543, 612, 831, 884, 1117
TspGWI ACGGA 2 cut(s) 1172, 1277
Tth111I GACNNNGTC 1 cut(s) 96
Van91I CCANNNNNTGG 1 cut(s) 441
Vha464I CTTAAG 1 cut(s) 1103
VpaK11BI GGWCC 2 cut(s) 66, 305
XagI CCTNNNNNAGG 2 cut(s) 61, 1106
XapI RAATTY 3 cut(s) 327, 374, 393
XceI RCATGY 5 cut(s) 728, 758, 950, 1072, 1295
XcmI CCANNNNNNNNNTGG 1 cut(s) 1174
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 3 cut(s) 216, 918, 1247
ZraI GACGTC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.