Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002914.1

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Forward (+)

38134 .. 38793

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002914.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atggcaagctcggagcacggaagaattttcggagaatgtcgctataacatcaatattcgtgtgacgtatgcacccttgcttgctaagatatgtataacagaagactttctgtttgactctacaactggagattttcaattgttttggaattatcttcctcagttagtcactctcaggttggtcctagagaaagagccaaagtcggtccctgaatttccagaattaactagtctcgagttcttatcattgagcattgccagaattaataggcgaagccttcttcttttgacttctttgatcgagggatctccttacttgcataaatttaaattgaggttgagacggagtttgatgggatgcaggcatcggagaagcaaggtaattagtgaggcgaatacaagtcctcatcagtgtcttaaggtggtcgaactttctggattcagtgggtcgaaacatgaaactgaggttgccaggtacttaattaagaaagctgttgcgcttaaaaaattaattatcgatctggactcgaagcgcattctggaggagatcgaccctttacgtccgctgtcaaccaaaatcaaagaactggagatggcaagaaagcatgctttacagcttgaaaaaaaattacccctcggaggtgagttaattgttttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

219

Amino Acids

25.13

Weight (kDa)

9.53

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	658
AciI	CCGC	1 cut(s)	563
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	3 cut(s)	24, 212, 323
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	638
AflII	CTTAAG	1 cut(s)	416
AgsI	TTSAA	2 cut(s)	137, 620
AhlI	ACTAGT	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	470
AluBI	AGCT	3 cut(s)	9, 491, 616
AluI	AGCT	3 cut(s)	9, 491, 616
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	2 cut(s)	236, 334
AlwI	GGATC	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	233
ApoI	RAATTY	3 cut(s)	24, 212, 323
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AseI	ATTAAT	2 cut(s)	264, 509
Asp700I	GAANNNNTTC	1 cut(s)	105
AspLEI	GCGC	2 cut(s)	499, 534
AspS9I	GGNCC	2 cut(s)	181, 205
AsuHPI	GGTGA	1 cut(s)	653
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	181, 205
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	18
BccI	CCATC	2 cut(s)	346, 586
BciT130I	CCWGG	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	236, 334
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	2 cut(s)	185, 228
BfrI	CTTAAG	1 cut(s)	416
Bme1390I	CCNGG	1 cut(s)	472
Bme18I	GGWCC	2 cut(s)	181, 205
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	181, 205
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	472
BmsI	GCATC	2 cut(s)	347, 373
BpiI	GAAGAC	1 cut(s)	108
BpmI	CTGGAG	3 cut(s)	147, 560, 608
Bsa29I	ATCGAT	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse1I	ACTGG	2 cut(s)	130, 591
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	472
BseCI	ATCGAT	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	634
BseGI	GGATG	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	3 cut(s)	173, 187, 453
BseNI	ACTGG	2 cut(s)	130, 591
BseRI	GAGGAG	1 cut(s)	557
BshVI	ATCGAT	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	2 cut(s)	236, 334
BsmBI	CGTCTC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	534
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	4 cut(s)	297, 305, 517, 546
BspACI	CCGC	1 cut(s)	563
BspCNI	CTCAG	3 cut(s)	172, 186, 454
BspDI	ATCGAT	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	313
BspTI	CTTAAG	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	130, 591
BssECI	CCNNGG	1 cut(s)	634
BssMI	GATC	4 cut(s)	297, 305, 517, 546
Bst2UI	CCWGG	1 cut(s)	472
BstAFI	CTTAAG	1 cut(s)	416
BstC8I	GCNNGC	4 cut(s)	7, 81, 362, 606
BstDEI	CTNAG	4 cut(s)	84, 159, 173, 462
BstF5I	GGATG	1 cut(s)	362
BstHHI	GCGC	2 cut(s)	499, 534
BstKTI	GATC	4 cut(s)	300, 308, 520, 549
BstMAI	GTCTC	2 cut(s)	236, 334
BstMBI	GATC	4 cut(s)	297, 305, 517, 546
BstNI	CCWGG	1 cut(s)	472
BstNSI	RCATGY	1 cut(s)	608
BstSCI	CCNGG	1 cut(s)	470
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
Bsu15I	ATCGAT	1 cut(s)	516
BsuTUI	ATCGAT	1 cut(s)	516
BtsCI	GGATG	1 cut(s)	362
BtsIMutI	CAGTG	2 cut(s)	416, 448
Cac8I	GCNNGC	4 cut(s)	7, 81, 362, 606
CfoI	GCGC	2 cut(s)	499, 534
Cfr13I	GGNCC	2 cut(s)	181, 205
ClaI	ATCGAT	1 cut(s)	516
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	2 cut(s)	455, 605
CviJI	RGCY	5 cut(s)	9, 196, 276, 491, 616
CviKI_1	RGCY	5 cut(s)	9, 196, 276, 491, 616
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	4 cut(s)	84, 159, 173, 462
DpnI	GATC	4 cut(s)	299, 307, 519, 548
DpnII	GATC	4 cut(s)	297, 305, 517, 546
DraI	TTTAAA	1 cut(s)	328
Eco47I	GGWCC	2 cut(s)	181, 205
Eco88I	CYCGRG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	470
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	2 cut(s)	458, 608
FaiI	YATR	8 cut(s)	45, 69, 91, 95, 321, 456, 606, 658
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	2 cut(s)	454, 604
FokI	GGATG	1 cut(s)	369
FspBI	CTAG	2 cut(s)	185, 228
GlaI	GCGC	2 cut(s)	498, 533
GsuI	CTGGAG	3 cut(s)	147, 560, 608
HhaI	GCGC	2 cut(s)	499, 534
Hin1II	CATG	2 cut(s)	458, 608
Hin6I	GCGC	2 cut(s)	497, 532
HinP1I	GCGC	2 cut(s)	497, 532
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HinfI	GANTC	3 cut(s)	116, 438, 524
HphI	GGTGA	1 cut(s)	653
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	4 cut(s)	13, 32, 369, 638
Hpy188III	TCNNGA	5 cut(s)	218, 233, 435, 521, 539
Hpy8I	GTNNAC	1 cut(s)	570
HpyAV	CCTTC	1 cut(s)	287
HpyCH4IV	ACGT	2 cut(s)	65, 559
HpyCH4V	TGCA	3 cut(s)	71, 319, 360
HpyF3I	CTNAG	4 cut(s)	84, 159, 173, 462
HpySE526I	ACGT	2 cut(s)	65, 559
Hsp92II	CATG	2 cut(s)	458, 608
HspAI	GCGC	2 cut(s)	497, 532
Kzo9I	GATC	4 cut(s)	297, 305, 517, 546
LmnI	GCTCC	1 cut(s)	13
LweI	GCATC	2 cut(s)	347, 373
MaeI	CTAG	2 cut(s)	185, 228
MaeII	ACGT	2 cut(s)	65, 559
MaeIII	GTNAC	2 cut(s)	61, 166
MalI	GATC	4 cut(s)	299, 307, 519, 548
MboI	GATC	4 cut(s)	297, 305, 517, 546
MboII	GAAGA	4 cut(s)	33, 113, 146, 272
MfeI	CAATTG	1 cut(s)	137
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	18
MlyI	GAGTC	2 cut(s)	110, 518
MnlI	CCTC	9 cut(s)	168, 295, 327, 382, 414, 457, 535, 632, 644
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	9 cut(s)	224, 264, 327, 417, 479, 483, 501, 509, 647
MspA1I	CMGCKG	1 cut(s)	565
MspCI	CTTAAG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	472
MunI	CAATTG	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	472
NdeII	GATC	4 cut(s)	297, 305, 517, 546
NlaIII	CATG	2 cut(s)	458, 608
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	61, 166
NspI	RCATGY	1 cut(s)	608
PacI	TTAATTAA	1 cut(s)	483
PaeI	GCATGC	1 cut(s)	608
PaeR7I	CTCGAG	1 cut(s)	233
PctI	GAATGC	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	438
PleI	GAGTC	2 cut(s)	110, 518
PpsI	GAGTC	2 cut(s)	110, 518
PshBI	ATTAAT	2 cut(s)	264, 509
PsiI	TTATAA	1 cut(s)	658
Psp6I	CCWGG	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	181, 205
PsuI	RGATCY	1 cut(s)	305
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SaqAI	TTAA	9 cut(s)	224, 264, 327, 417, 479, 483, 501, 509, 647
Sau3AI	GATC	4 cut(s)	297, 305, 517, 546
Sau96I	GGNCC	2 cut(s)	181, 205
SchI	GAGTC	2 cut(s)	110, 518
ScrFI	CCNGG	1 cut(s)	472
SduI	GDGCHC	1 cut(s)	18
SfaNI	GCATC	2 cut(s)	347, 373
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	2 cut(s)	181, 205
SlaI	CTCGAG	1 cut(s)	233
SmiI	ATTTAAAT	1 cut(s)	328
SmlI	CTYRAG	2 cut(s)	233, 416
SmoI	CTYRAG	2 cut(s)	233, 416
SpeI	ACTAGT	1 cut(s)	227
SphI	GCATGC	1 cut(s)	608
SsiI	CCGC	1 cut(s)	563
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	2 cut(s)	185, 228
StyD4I	CCNGG	1 cut(s)	470
SwaI	ATTTAAAT	1 cut(s)	328
TaiI	ACGT	2 cut(s)	68, 562
TaqI	TCGA	7 cut(s)	234, 300, 426, 449, 516, 527, 549
TaqII	GACCGA	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	9 cut(s)	224, 264, 327, 417, 479, 483, 501, 509, 647
Tru9I	TTAA	9 cut(s)	224, 264, 327, 417, 479, 483, 501, 509, 647
TscAI	CASTG	2 cut(s)	416, 448
TseFI	GTSAC	2 cut(s)	61, 166
Tsp45I	GTSAC	2 cut(s)	61, 166
TspDTI	ATGAA	1 cut(s)	471
TspGWI	ACGGA	2 cut(s)	33, 358
TspRI	CASTG	2 cut(s)	416, 448
Vha464I	CTTAAG	1 cut(s)	416
VpaK11BI	GGWCC	2 cut(s)	181, 205
VspI	ATTAAT	2 cut(s)	264, 509
XapI	RAATTY	3 cut(s)	24, 212, 323
XceI	RCATGY	1 cut(s)	608
XhoI	CTCGAG	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	2 cut(s)	185, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.