Rroxscaffold_6G00388420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003939
Physical Location & Seq
Forward (+)
1353571 .. 1354609
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388420.1

Sequence Viewer

Length: 240 bp
ATGATGTTTATGCTTTTCCGGCGACTCCGGTCACCTTTGTCGATGCATGAGGTTTTTTTTTCCGGTGTCTTCTCCGATAAGCCACAAAAGAATGGCATCCACGCGCAAAGATCTCTTAGCAGACTTGCTGATGTCAGCCATGACCTGGAGCTGCGGTCAAGCTGGCAACCGACCTGCTTGGGTCAAGAAAAAGGTCAGCTTGCTCGCCTTTTTCTTCGCCTAGGTCATCGAAGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.16

Weight (kDa)

11.18

Isoelectric Point (pI)

70.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 182
AccB7I CCANNNNNTGG 1 cut(s) 145
AccII CGCG 1 cut(s) 104
AciI CCGC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 145
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 3 cut(s) 151, 162, 199
AluI AGCT 3 cut(s) 151, 162, 199
ApeKI GCWGC 1 cut(s) 151
AspA2I CCTAGG 1 cut(s) 220
AspLEI GCGC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 24
AvrII CCTAGG 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 146
BfaI CTAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 182
BglII AGATCT 1 cut(s) 110
BisI GCNGC 1 cut(s) 152
BlnI CCTAGG 1 cut(s) 220
BlsI GCNGC 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 2 cut(s) 33, 105
BoxI GACNNNNGTC 1 cut(s) 28
BpiI GAAGAC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 220
BsaWI WCCGGW 2 cut(s) 27, 62
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 104
BsiSI CCGG 3 cut(s) 19, 28, 63
BslI CCNNNNNNNGG 1 cut(s) 145
Bsp143I GATC 1 cut(s) 110
BspACI CCGC 1 cut(s) 154
BspFNI CGCG 1 cut(s) 104
BspHI TCATGA 1 cut(s) 236
BspMI ACCTGC 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 110
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 146
BstC8I GCNNGC 3 cut(s) 164, 201, 205
BstDEI CTNAG 1 cut(s) 116
BstEII GGTNACC 1 cut(s) 30
BstF5I GGATG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 104
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 1 cut(s) 113
BstMBI GATC 1 cut(s) 110
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNI CCWGG 1 cut(s) 146
BstPAI GACNNNNGTC 1 cut(s) 28
BstPI GGTNACC 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 144
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 138
BstV2I GAAGAC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BtsCI GGATG 1 cut(s) 96
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 3 cut(s) 164, 201, 205
CciI TCATGA 1 cut(s) 236
CfoI GCGC 1 cut(s) 106
CviAII CATG 3 cut(s) 47, 140, 237
CviJI RGCY 5 cut(s) 82, 138, 151, 162, 199
CviKI_1 RGCY 5 cut(s) 82, 138, 151, 162, 199
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 112
DpnII GATC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 220
Eco91I GGTNACC 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 3 cut(s) 50, 143, 240
FaiI YATR 4 cut(s) 11, 48, 141, 238
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 3 cut(s) 46, 139, 236
Fnu4HI GCNGC 1 cut(s) 152
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 152
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 152
GsuI CTGGAG 1 cut(s) 167
HapII CCGG 3 cut(s) 19, 28, 63
HhaI GCGC 1 cut(s) 106
Hin1II CATG 3 cut(s) 50, 143, 240
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HinfI GANTC 1 cut(s) 24
HpaII CCGG 3 cut(s) 19, 28, 63
HphI GGTGA 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 185, 237
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 3 cut(s) 50, 143, 240
HspAI GCGC 1 cut(s) 104
Kzo9I GATC 1 cut(s) 110
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 7 cut(s) 32, 41, 76, 131, 148, 158, 187
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 2 cut(s) 33, 105
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 30
MalI GATC 1 cut(s) 112
MboI GATC 1 cut(s) 110
MboII GAAGA 2 cut(s) 61, 206
MflI RGATCY 1 cut(s) 110
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 1 cut(s) 43
Mph1103I ATGCAT 1 cut(s) 48
MspI CCGG 3 cut(s) 19, 28, 63
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 19
NdeII GATC 1 cut(s) 110
NlaIII CATG 3 cut(s) 50, 143, 240
NmuCI GTSAC 1 cut(s) 30
NsiI ATGCAT 1 cut(s) 48
PagI TCATGA 1 cut(s) 236
PflMI CCANNNNNTGG 1 cut(s) 145
PkrI GCNGC 1 cut(s) 153
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PshAI GACNNNNGTC 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 144
PspEI GGTNACC 1 cut(s) 30
PspGI CCWGG 1 cut(s) 144
PsuI RGATCY 1 cut(s) 110
SatI GCNGC 1 cut(s) 152
Sau3AI GATC 1 cut(s) 110
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 146
SetI ASST 9 cut(s) 37, 54, 147, 153, 164, 176, 196, 201, 226
SfaNI GCATC 2 cut(s) 33, 105
SsiI CCGC 1 cut(s) 154
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 220
TaqI TCGA 2 cut(s) 41, 229
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 225
Van91I CCANNNNNTGG 1 cut(s) 145
XmaJI CCTAGG 1 cut(s) 220
XspI CTAG 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.