Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Reverse (-)

30058995 .. 30074883

Gene Structure 15889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG186100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGGGAGAGAACGTGGGAAGGGGGAGAGCTTGTGGATTGTGTCCAACTGACACATATGTTACTGCTCTTGCACGCAATAAAGCATCTTATCTGATTTACCCTCCCTCTAATATGGCAAAAAGAAGGGGTAAGAGGACTCAATCTACATGTGGAAAACAAAACAAACTTCCAATCAATTTGGAACAGGATTGCATTAGCGTGCTGCCCGACGAAGTTCTAGTCCTCATTCTTTCCTTACTTAGTATTAAGGAAGCAAAACAAATTACTTGTCTCAACTTCTTTTTAGATGAATTATCTAAAACAGAGAAGATAAAAATAGGAAGACAAGTATTTGAAATACCTAGGACATACAACTGGGTGAATCAAGTCTTGCAATTACATCAGGGTCAAATCTTAGATGAGTTCAAACTTTGTTCTTCTTCAATAGATTGCGATTCGACTTCTGAAATCGACAGTTGGATCGAATTGGTAATACAGAAGAAAGTACGAAAGTTTGAGATAGACCTGCAAGGAGATAGAGGTGTAGCTCCGTATTGTTCCCATTATACATTTCCAGAGAATCTATTTCGAAACCCTTTTGGTGTTTCATGGTTTTCCTGGCTTACACACCTTTCTTTGAACTATGTGAATATAACTAGTGAACTAGTCGAGCACTTCATATCAAACTGCCAACTTCTCGAACACCTGTTTATTGCTGGCTCGGAGTATTTAGAAGATTTGAAAGTTGTTGGTGAGTTGCTTCGGCTTAAGTTCCTTCAGATATGTGATTGCCTTAACTTATTTCAGCTTGAGATATCTGCTCCTTGTCTGGAAACATTCTTTTATGACGGAGAATGTCGCTATAACATCAATATTCGTGTGACGTATGCACCCTTGCTTGCTAAGATATCTATAACAGAAGACTTGCTTTTTGACTCTACTACTGGAGATTTTCAATTGTTTTGGAATTATCTTCCTCAGTTAGTGACTCTCAGGTTGGTCCTAGAGAAAGAGCCAAAGTTGGTCCCTGAATTTCCAGAATTAACTAGTCTCGAGTTCTTATCATTGAGCATTGCCAGAATTAATAGGCGAAGCCTTCTTCTTTTGACTTCTTTGATCGAGGGATCTCCTTACTTGCATAGATTTAAATTTAGGTTGAGAAGGAGTTTGATGGGATGCAGGCATCGGAGAAGCAAGGTAATTAGTGAGGCGAATACAAGTCCTCATCAGTGCCTTAAGGTGGTCGAACTTTCTGGGTTCAGTGGGTCGAAACATGAAACTGAGGTTGCCAGGTACTTAATTAAGAAAGCTGTTGCGCTTAAAAAATTAATTATCGATCTGGACTCGAAGCGCATTCTGGAGGAGATCAACCCTTTACGTCCGCTGTCAACCAAAATCAAAGAACTGGAGATGGCAAGAAAGCATGCTTTACAGCTTGAAAAAAAATTACCCCTCGGAGGTGAGTTAATTGTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

485

Amino Acids

55.69

Weight (kDa)

8.5

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	188 - 443	3.4e-23	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	197 - 294	4.7e-09	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	403 - 438	1.5e-08	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1456
Acc36I	ACCTGC	1 cut(s)	513
AciI	CCGC	1 cut(s)	1361
AclWI	GGATC	2 cut(s)	467, 1111
AcsI	RAATTY	2 cut(s)	1010, 1127
AcuI	CTGAAG	1 cut(s)	740
AfaI	GTAC	2 cut(s)	486, 1274
AfiI	CCNNNNNNNGG	2 cut(s)	1219, 1436
AflII	CTTAAG	2 cut(s)	746, 1214
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	7 cut(s)	335, 406, 423, 619, 721, 935, 1418
AhlI	ACTAGT	3 cut(s)	635, 643, 1025
AjnI	CCWGG	2 cut(s)	596, 1268
AluBI	AGCT	5 cut(s)	29, 527, 787, 1289, 1414
AluI	AGCT	5 cut(s)	29, 527, 787, 1289, 1414
Alw21I	GWGCWC	1 cut(s)	654
Alw26I	GTCTC	2 cut(s)	275, 1034
AlwI	GGATC	2 cut(s)	467, 1111
Ama87I	CYCGRG	1 cut(s)	1031
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	2 cut(s)	1010, 1127
ArsI	GACNNNNNNTTYG	6 cut(s)	204, 236, 253, 285, 893, 925
AseI	ATTAAT	2 cut(s)	1062, 1307
AspA2I	CCTAGG	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	1297, 1332
AspS9I	GGNCC	2 cut(s)	979, 1003
AsuHPI	GGTGA	3 cut(s)	370, 743, 1451
AsuII	TTCGAA	1 cut(s)	568
AvaI	CYCGRG	1 cut(s)	1031
AvaII	GGWCC	2 cut(s)	979, 1003
AvrII	CCTAGG	1 cut(s)	341
BbsI	GAAGAC	2 cut(s)	328, 906
Bbv12I	GWGCWC	1 cut(s)	654
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	2 cut(s)	1144, 1384
BciT130I	CCWGG	2 cut(s)	598, 1270
BcoDI	GTCTC	2 cut(s)	275, 1034
BcuI	ACTAGT	3 cut(s)	635, 643, 1025
BfaI	CTAG	6 cut(s)	218, 342, 636, 644, 983, 1026
BfrI	CTTAAG	2 cut(s)	746, 1214
BfuAI	ACCTGC	1 cut(s)	513
BisI	GCNGC	1 cut(s)	203
BlnI	CCTAGG	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	598, 1270
Bme18I	GGWCC	2 cut(s)	979, 1003
BmeT110I	CYCGRG	1 cut(s)	1031
BmgT120I	GGNCC	2 cut(s)	979, 1003
BmiI	GGNNCC	1 cut(s)	1005
BmrFI	CCNGG	2 cut(s)	598, 1270
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	3 cut(s)	92, 1145, 1171
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	2 cut(s)	328, 906
BpmI	CTGGAG	3 cut(s)	945, 1358, 1406
Bpu14I	TTCGAA	1 cut(s)	568
BpuEI	CTTGAG	1 cut(s)	809
Bsa29I	ATCGAT	1 cut(s)	1314
BsaJI	CCNNGG	2 cut(s)	341, 1432
BsaXI	ACNNNNNCTCC	3 cut(s)	16, 27, 46
Bsc4I	CCNNNNNNNGG	2 cut(s)	1219, 1436
Bse1I	ACTGG	3 cut(s)	359, 928, 1389
Bse3DI	GCAATG	1 cut(s)	1050
BseBI	CCWGG	2 cut(s)	598, 1270
BseCI	ATCGAT	1 cut(s)	1314
BseDI	CCNNGG	2 cut(s)	341, 1432
BseGI	GGATG	1 cut(s)	1160
BseLI	CCNNNNNNNGG	2 cut(s)	1219, 1436
BseMI	GCAATG	1 cut(s)	1050
BseMII	CTCAG	3 cut(s)	971, 985, 1251
BseNI	ACTGG	3 cut(s)	359, 928, 1389
BseRI	GAGGAG	1 cut(s)	1355
BseXI	GCAGC	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	1314
BsiHKAI	GWGCWC	1 cut(s)	654
BsiHKCI	CYCGRG	1 cut(s)	1031
BslFI	GGGAC	1 cut(s)	989
BslI	CCNNNNNNNGG	2 cut(s)	1219, 1436
BsmAI	GTCTC	2 cut(s)	275, 1034
BsmFI	GGGAC	1 cut(s)	989
BsmI	GAATGC	1 cut(s)	1332
BsoBI	CYCGRG	1 cut(s)	1031
Bsp119I	TTCGAA	1 cut(s)	568
Bsp1286I	GDGCHC	1 cut(s)	654
Bsp143I	GATC	5 cut(s)	459, 1095, 1103, 1315, 1344
BspACI	CCGC	1 cut(s)	1361
BspCNI	CTCAG	3 cut(s)	970, 984, 1252
BspDI	ATCGAT	1 cut(s)	1314
BspLI	GGNNCC	1 cut(s)	1005
BspMI	ACCTGC	1 cut(s)	513
BspPI	GGATC	2 cut(s)	467, 1111
BspT104I	TTCGAA	1 cut(s)	568
BspTI	CTTAAG	2 cut(s)	746, 1214
BsrDI	GCAATG	1 cut(s)	1050
BsrI	ACTGG	3 cut(s)	359, 928, 1389
BssECI	CCNNGG	2 cut(s)	341, 1432
BssMI	GATC	5 cut(s)	459, 1095, 1103, 1315, 1344
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	2 cut(s)	598, 1270
Bst4CI	ACNGT	1 cut(s)	455
BstAFI	CTTAAG	2 cut(s)	746, 1214
BstBI	TTCGAA	1 cut(s)	568
BstC8I	GCNNGC	6 cut(s)	73, 200, 697, 879, 1160, 1404
BstDEI	CTNAG	6 cut(s)	239, 394, 882, 957, 971, 1260
BstF5I	GGATG	1 cut(s)	1160
BstHHI	GCGC	2 cut(s)	1297, 1332
BstKTI	GATC	5 cut(s)	462, 1098, 1106, 1318, 1347
BstMAI	GTCTC	2 cut(s)	275, 1034
BstMBI	GATC	5 cut(s)	459, 1095, 1103, 1315, 1344
BstNI	CCWGG	2 cut(s)	598, 1270
BstNSI	RCATGY	2 cut(s)	150, 1406
BstSCI	CCNGG	2 cut(s)	596, 1268
BstV1I	GCAGC	1 cut(s)	189
BstV2I	GAAGAC	2 cut(s)	328, 906
BstX2I	RGATCY	1 cut(s)	1103
BstYI	RGATCY	1 cut(s)	1103
Bsu15I	ATCGAT	1 cut(s)	1314
BsuTUI	ATCGAT	1 cut(s)	1314
BtsCI	GGATG	1 cut(s)	1160
BtsIMutI	CAGTG	2 cut(s)	1214, 1246
BveI	ACCTGC	1 cut(s)	513
Cac8I	GCNNGC	6 cut(s)	73, 200, 697, 879, 1160, 1404
CfoI	GCGC	2 cut(s)	1297, 1332
Cfr13I	GGNCC	2 cut(s)	979, 1003
ClaI	ATCGAT	1 cut(s)	1314
Csp6I	GTAC	2 cut(s)	485, 1273
CviAII	CATG	4 cut(s)	147, 588, 1253, 1403
CviQI	GTAC	2 cut(s)	485, 1273
DdeI	CTNAG	6 cut(s)	239, 394, 882, 957, 971, 1260
DpnI	GATC	5 cut(s)	461, 1097, 1105, 1317, 1346
DpnII	GATC	5 cut(s)	459, 1095, 1103, 1315, 1344
DraI	TTTAAA	1 cut(s)	1126
Eco130I	CCWWGG	1 cut(s)	341
Eco32I	GATATC	2 cut(s)	795, 888
Eco47I	GGWCC	2 cut(s)	979, 1003
Eco57I	CTGAAG	1 cut(s)	740
Eco88I	CYCGRG	1 cut(s)	1031
EcoRII	CCWGG	2 cut(s)	596, 1268
EcoRV	GATATC	2 cut(s)	795, 888
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	4 cut(s)	150, 591, 1256, 1406
FalI	AAGNNNNNCTT	2 cut(s)	891, 923
FaqI	GGGAC	1 cut(s)	989
FatI	CATG	4 cut(s)	146, 587, 1252, 1402
FauNDI	CATATG	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	1 cut(s)	1167
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	6 cut(s)	218, 342, 636, 644, 983, 1026
GlaI	GCGC	2 cut(s)	1296, 1331
GluI	GCNGC	1 cut(s)	203
GsuI	CTGGAG	3 cut(s)	945, 1358, 1406
HhaI	GCGC	2 cut(s)	1297, 1332
Hin1II	CATG	4 cut(s)	150, 591, 1256, 1406
Hin6I	GCGC	2 cut(s)	1295, 1330
HinP1I	GCGC	2 cut(s)	1295, 1330
HincII	GTYRAC	1 cut(s)	1368
HindII	GTYRAC	1 cut(s)	1368
HinfI	GANTC	7 cut(s)	136, 361, 434, 559, 914, 967, 1322
HphI	GGTGA	3 cut(s)	370, 743, 1451
Hpy166II	GTNNAC	2 cut(s)	641, 1368
Hpy188I	TCNGA	6 cut(s)	93, 445, 703, 759, 1167, 1436
Hpy188III	TCNNGA	7 cut(s)	554, 677, 809, 1016, 1031, 1319, 1337
Hpy8I	GTNNAC	2 cut(s)	641, 1368
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	5 cut(s)	12, 117, 764, 1085, 1134
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	3 cut(s)	12, 863, 1357
HpyCH4V	TGCA	7 cut(s)	71, 192, 373, 508, 869, 1117, 1158
HpyF3I	CTNAG	6 cut(s)	239, 394, 882, 957, 971, 1260
HpySE526I	ACGT	3 cut(s)	12, 863, 1357
Hsp92II	CATG	4 cut(s)	150, 591, 1256, 1406
HspAI	GCGC	2 cut(s)	1295, 1330
Kzo9I	GATC	5 cut(s)	459, 1095, 1103, 1315, 1344
LmnI	GCTCC	2 cut(s)	532, 805
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	3 cut(s)	92, 1145, 1171
MaeI	CTAG	6 cut(s)	218, 342, 636, 644, 983, 1026
MaeII	ACGT	3 cut(s)	12, 863, 1357
MaeIII	GTNAC	3 cut(s)	58, 859, 964
MalI	GATC	5 cut(s)	461, 1097, 1105, 1317, 1346
MboI	GATC	5 cut(s)	459, 1095, 1103, 1315, 1344
MboII	GAAGA	9 cut(s)	319, 333, 408, 411, 490, 725, 911, 944, 1070
MfeI	CAATTG	1 cut(s)	935
MflI	RGATCY	1 cut(s)	1103
MhlI	GDGCHC	1 cut(s)	654
MlyI	GAGTC	4 cut(s)	130, 908, 961, 1316
MmeI	TCCRAC	2 cut(s)	68, 437
MslI	CAYNNNNRTG	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	1363
MspCI	CTTAAG	2 cut(s)	746, 1214
MspR9I	CCNGG	2 cut(s)	598, 1270
MunI	CAATTG	1 cut(s)	935
Mva1269I	GAATGC	1 cut(s)	1332
MvaI	CCWGG	2 cut(s)	598, 1270
NdeI	CATATG	1 cut(s)	55
NdeII	GATC	5 cut(s)	459, 1095, 1103, 1315, 1344
NlaIII	CATG	4 cut(s)	150, 591, 1256, 1406
NlaIV	GGNNCC	1 cut(s)	1005
NmuCI	GTSAC	2 cut(s)	859, 964
NspI	RCATGY	2 cut(s)	150, 1406
NspV	TTCGAA	1 cut(s)	568
PacI	TTAATTAA	1 cut(s)	1281
PaeI	GCATGC	1 cut(s)	1406
PaeR7I	CTCGAG	1 cut(s)	1031
PciI	ACATGT	1 cut(s)	146
PctI	GAATGC	1 cut(s)	1332
PfeI	GAWTC	3 cut(s)	361, 434, 559
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	4 cut(s)	130, 908, 961, 1316
PpsI	GAGTC	4 cut(s)	130, 908, 961, 1316
PscI	ACATGT	1 cut(s)	146
PshBI	ATTAAT	2 cut(s)	1062, 1307
PsiI	TTATAA	1 cut(s)	1456
Psp6I	CCWGG	2 cut(s)	596, 1268
PspGI	CCWGG	2 cut(s)	596, 1268
PspN4I	GGNNCC	1 cut(s)	1005
PspPI	GGNCC	2 cut(s)	979, 1003
PsuI	RGATCY	1 cut(s)	1103
RsaI	GTAC	2 cut(s)	486, 1274
RsaNI	GTAC	2 cut(s)	485, 1273
RseI	CAYNNNNRTG	1 cut(s)	197
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	5 cut(s)	459, 1095, 1103, 1315, 1344
Sau96I	GGNCC	2 cut(s)	979, 1003
SchI	GAGTC	4 cut(s)	130, 908, 961, 1316
ScrFI	CCNGG	2 cut(s)	598, 1270
SduI	GDGCHC	1 cut(s)	654
SfaNI	GCATC	3 cut(s)	92, 1145, 1171
Sfr274I	CTCGAG	1 cut(s)	1031
SfuI	TTCGAA	1 cut(s)	568
SinI	GGWCC	2 cut(s)	979, 1003
SlaI	CTCGAG	1 cut(s)	1031
SmiI	ATTTAAAT	1 cut(s)	1126
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	4 cut(s)	746, 788, 1031, 1214
SmoI	CTYRAG	4 cut(s)	746, 788, 1031, 1214
SpeI	ACTAGT	3 cut(s)	635, 643, 1025
SphI	GCATGC	1 cut(s)	1406
SsiI	CCGC	1 cut(s)	1361
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	6 cut(s)	218, 342, 636, 644, 983, 1026
StyD4I	CCNGG	2 cut(s)	596, 1268
StyI	CCWWGG	1 cut(s)	341
SwaI	ATTTAAAT	1 cut(s)	1126
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	3 cut(s)	15, 866, 1360
TfiI	GAWTC	3 cut(s)	361, 434, 559
TscAI	CASTG	2 cut(s)	1214, 1246
TseFI	GTSAC	2 cut(s)	859, 964
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	2 cut(s)	859, 964
TspDTI	ATGAA	4 cut(s)	303, 576, 646, 1269
TspGWI	ACGGA	2 cut(s)	519, 843
TspRI	CASTG	2 cut(s)	1214, 1246
Vha464I	CTTAAG	2 cut(s)	746, 1214
VpaK11BI	GGWCC	2 cut(s)	979, 1003
VspI	ATTAAT	2 cut(s)	1062, 1307
XapI	RAATTY	2 cut(s)	1010, 1127
XceI	RCATGY	2 cut(s)	150, 1406
XhoI	CTCGAG	1 cut(s)	1031
XmaJI	CCTAGG	1 cut(s)	341
XspI	CTAG	6 cut(s)	218, 342, 636, 644, 983, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.