Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Forward (+)

57736062 .. 57736547

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26552

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCATAAGGGAGTCCAAAGGCTTGAGATAGACTTGGATGCAGATAGATTAGATCGTCAACTGGGGAATTATTACTTTTCAAAGGATTTATTTGGAGGTCCTGGTAATGACTGCATAGTTTTCCCTAAGTTCCTCAAACACCTTTCTTTGAGCTACGTAAACATAAAGGGTTATCTTGTTGAGCAGTTTCTATCCAACTGTCAATTTATTGAACACCTCTGTGTGTCTGGCTCGGCGTATTTAGAAGATTTGAGGGTTGTTGGTTCATCACTCCAGTTGAAGTTCCTGCAGATTAGTGACTGTCCTTGGTTAGAAAAGGTTGAGATTTTTGCTCCTAATCTTGTGTCATTTGTCTATTACGGAGTAAGTAAATGTAGTGAAGTAGTTCTGTTGAAGCATGCACCCTTGCTTGTTAAGGTATCTCTTGGAGAAGAAACTGTTAGTATGGATGGAGCTTTTCGAGCAGTTTCGAGTTATTTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

161

Amino Acids

18.15

Weight (kDa)

5.77

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	40 - 137	7e-07	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	44 - 124	6.5e-11	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	4 cut(s)	81, 212, 280, 394
AjnI	CCWGG	1 cut(s)	100
AleI	CACNNNNGTG	1 cut(s)	219
AluBI	AGCT	2 cut(s)	153, 455
AluI	AGCT	2 cut(s)	153, 455
Asp700I	GAANNNNTTC	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	98
BccI	CCATC	1 cut(s)	443
BciT130I	CCWGG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	287
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	102
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	66, 274
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	2 cut(s)	43, 454
BseNI	ACTGG	2 cut(s)	66, 274
Bsp143I	GATC	1 cut(s)	52
BspMAI	CTGCAG	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	66, 274
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	3 cut(s)	200, 302, 439
BstBAI	YACGTR	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	2 cut(s)	126, 483
BstF5I	GGATG	2 cut(s)	43, 454
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	287
BstSNI	TACGTA	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	43, 454
Cac8I	GCNNGC	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	98
CviAII	CATG	1 cut(s)	398
CviJI	RGCY	4 cut(s)	22, 153, 231, 455
CviKI_1	RGCY	4 cut(s)	22, 153, 231, 455
DdeI	CTNAG	2 cut(s)	126, 483
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eco105I	TACGTA	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	305
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	305
FaeI	CATG	1 cut(s)	401
FaiI	YATR	5 cut(s)	6, 116, 164, 399, 446
FatI	CATG	1 cut(s)	397
FokI	GGATG	2 cut(s)	50, 461
GsuI	CTGGAG	1 cut(s)	257
Hin1II	CATG	1 cut(s)	401
HincII	GTYRAC	1 cut(s)	59
HindII	GTYRAC	1 cut(s)	59
HinfI	GANTC	1 cut(s)	12
Hpy166II	GTNNAC	2 cut(s)	59, 160
Hpy8I	GTNNAC	2 cut(s)	59, 160
HpyCH4III	ACNGT	3 cut(s)	200, 302, 439
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	5 cut(s)	4, 41, 114, 289, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	2 cut(s)	126, 483
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	401
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	2 cut(s)	337, 452
LpnPI	CCDG	6 cut(s)	47, 87, 114, 213, 287, 299
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	2 cut(s)	257, 443
MluCI	AATT	2 cut(s)	67, 203
MlyI	GAGTC	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	4 cut(s)	89, 143, 227, 246
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	401
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	401
OliI	CACNNNNGTG	1 cut(s)	219
PaeI	GCATGC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	384
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Ppu21I	YACGTR	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	98
PspPPI	RGGWCCY	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	291
RseI	CAYNNNNRTG	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	414
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	102
SetI	ASST	8 cut(s)	100, 144, 155, 159, 219, 321, 420, 457
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	287
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SnaBI	TACGTA	1 cut(s)	157
SphI	GCATGC	1 cut(s)	401
Sse9I	AATT	2 cut(s)	67, 203
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	3 cut(s)	200, 302, 439
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	2 cut(s)	460, 470
TasI	AATT	2 cut(s)	67, 203
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	98
XceI	RCATGY	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	384
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.