Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Forward (+)

24326635 .. 24328023

Gene Structure 1389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028560

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGCAAAAAGAAGGCGTAAGAGGACTCAATCTACATGTGGAAAACAAAACAAGCTTCCAATCAATTTGGAACAGGATTGCATTAGCGTGCTGCCCGACGAAGTTCTAGTCCTCATTCTTTCCCTACTGAGTATTAAGGAAGCAGTAAGTACTTGCATCTTGTCTAAAAGGTGGAAAAATGTGTGGAAACAAATTACTTGTCTCAACTTCTTTTTAGATGAATTATCTAAAACAGAGAAGATAAAAATAGGAAGACAAGTAGTTGAAATACCTAGGACATACAACTGGGTGAATCAAGTCTTGCAATTGCATCAGGGACAAATCTTAGATGAGTTCAAACTTTGTTCTTCTTCAATAGATTGCGATTCGACTTCTGAAATCGACAGTTGGATCGAATTGGTAATACAGAAGAAAGTACGAAAGTTTGAGATAGACCTGCAAGGAGATAGAGGTGTAGCTCCGTATTGTTCCCATTATACATTTCCAGAGAATCTATTTCGAAACCCTTTTGGTGTTTCATGGTTTTCCTGGCTTACTCACCTTTCTTTGAACTATGTGAATATAACTAGTGAACTAGTCGAGCACTTCATATCAAACTGCCAACTTCTCGAACACATGTTTATTGCTGGCTCGGAGTATTTAGAAGATTTGAAAGTTGTTGGTGAGTTGCTTCGGCTTAAGTTCCTTCAGATATGTGATTGCCTTAACTTATTTCAGCTTGAGATATCTGCTCCTTGTCTGGAGACATTCTTTTATGACGGAGAATGTCGCTATAACATCAATATTCGTGTGACGTATGCACCCTTGCTTGCTAAGATATCTATAACAGAAGACTTGCTGTTTGACTCTACTACTGGAGATTTTCAATTGTTTTGGAATTATCTTCCTCAGTTAGTGACTCTCAGGTTGGTCCTAGACAAAGAGCCAAAGTTGGTCCCTGAATTTCCAGAATTAACTAGTCTCGAGTTCTTATCATTGAGCATTGCCAGAATTAATAGGCGAAGCCTTCTTCTTTTGACTTCTTTGATCGAGGGATCTCCTTACTTGCATAGATTTAAATTGAGGTTGAGAAGGAGTTTGATGGGATACAGGCATCGGAGAAGCAAAATAATTAGTGAGGCGAATACAAGTCCTCATCAGTGCCTTAAGGTGGTCGAACTTTCTGGGTTCAGTGGGTCGAAACATGAAACTGAGGTTGCCAGGTACTTAATTAAGAAAGCTGTTGGGCTTAAAAAATTAATTATCGATCTGGACTCGAAGCGCATTCTGGAGGAGATCAACCCTTTACGTCCGCTGTCAACCAAAATCAAAGAACTGGAGATGGCAAGAAAGCATGCTTTACAGCTTGAAAAAAATTTACCCCTCGGAGGTGAGTTAATTGTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

463

Amino Acids

53.52

Weight (kDa)

8.66

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	28 - 64	6.3e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	100 - 420	7.3e-25	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	174 - 271	1.7e-08	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	380 - 415	6e-08	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1387
Acc36I	ACCTGC	1 cut(s)	444
AciI	CCGC	1 cut(s)	1292
AclWI	GGATC	2 cut(s)	398, 1042
AcsI	RAATTY	2 cut(s)	941, 1354
AcuI	CTGAAG	1 cut(s)	671
AfaI	GTAC	3 cut(s)	151, 417, 1205
AfiI	CCNNNNNNNGG	2 cut(s)	1150, 1367
AflII	CTTAAG	2 cut(s)	677, 1145
AflIII	ACRYGT	2 cut(s)	35, 615
AgsI	TTSAA	7 cut(s)	266, 337, 354, 550, 652, 866, 1349
AhlI	ACTAGT	3 cut(s)	566, 574, 956
AjnI	CCWGG	2 cut(s)	527, 1199
AluBI	AGCT	5 cut(s)	55, 458, 718, 1220, 1345
AluI	AGCT	5 cut(s)	55, 458, 718, 1220, 1345
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	3 cut(s)	206, 737, 965
AlwI	GGATC	2 cut(s)	398, 1042
Ama87I	CYCGRG	1 cut(s)	962
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	2 cut(s)	941, 1354
ArsI	GACNNNNNNTTYG	6 cut(s)	93, 125, 184, 216, 824, 856
AseI	ATTAAT	2 cut(s)	993, 1238
AspA2I	CCTAGG	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	1263
AspS9I	GGNCC	2 cut(s)	910, 934
AsuHPI	GGTGA	4 cut(s)	301, 530, 674, 1382
AsuII	TTCGAA	1 cut(s)	499
AvaI	CYCGRG	1 cut(s)	962
AvaII	GGWCC	2 cut(s)	910, 934
AvrII	CCTAGG	1 cut(s)	272
BbsI	GAAGAC	2 cut(s)	259, 837
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	2 cut(s)	1075, 1315
BciT130I	CCWGG	2 cut(s)	529, 1201
BciVI	GTATCC	1 cut(s)	1079
BcoDI	GTCTC	3 cut(s)	206, 737, 965
BcuI	ACTAGT	3 cut(s)	566, 574, 956
BfaI	CTAG	6 cut(s)	107, 273, 567, 575, 914, 957
BfrI	CTTAAG	2 cut(s)	677, 1145
BfuAI	ACCTGC	1 cut(s)	444
BfuI	GTATCC	1 cut(s)	1079
BisI	GCNGC	1 cut(s)	92
BlnI	CCTAGG	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	93
BmcAI	AGTACT	1 cut(s)	151
Bme1390I	CCNGG	2 cut(s)	529, 1201
Bme18I	GGWCC	2 cut(s)	910, 934
BmeT110I	CYCGRG	1 cut(s)	962
BmgT120I	GGNCC	2 cut(s)	910, 934
BmiI	GGNNCC	1 cut(s)	936
BmrFI	CCNGG	2 cut(s)	529, 1201
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	3 cut(s)	165, 319, 1102
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	2 cut(s)	259, 837
BpmI	CTGGAG	4 cut(s)	761, 876, 1289, 1337
Bpu14I	TTCGAA	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	740
Bsa29I	ATCGAT	1 cut(s)	1245
BsaJI	CCNNGG	2 cut(s)	272, 1363
Bsc4I	CCNNNNNNNGG	2 cut(s)	1150, 1367
Bse1I	ACTGG	3 cut(s)	290, 859, 1320
Bse3DI	GCAATG	1 cut(s)	981
BseBI	CCWGG	2 cut(s)	529, 1201
BseCI	ATCGAT	1 cut(s)	1245
BseDI	CCNNGG	2 cut(s)	272, 1363
BseLI	CCNNNNNNNGG	2 cut(s)	1150, 1367
BseMI	GCAATG	1 cut(s)	981
BseMII	CTCAG	4 cut(s)	119, 902, 916, 1182
BseNI	ACTGG	3 cut(s)	290, 859, 1320
BseRI	GAGGAG	1 cut(s)	1286
BseXI	GCAGC	1 cut(s)	78
BshVI	ATCGAT	1 cut(s)	1245
BsiHKAI	GWGCWC	1 cut(s)	585
BsiHKCI	CYCGRG	1 cut(s)	962
BslFI	GGGAC	2 cut(s)	330, 920
BslI	CCNNNNNNNGG	2 cut(s)	1150, 1367
BsmAI	GTCTC	3 cut(s)	206, 737, 965
BsmFI	GGGAC	2 cut(s)	330, 920
BsmI	GAATGC	1 cut(s)	1263
BsoBI	CYCGRG	1 cut(s)	962
Bsp119I	TTCGAA	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
BspACI	CCGC	1 cut(s)	1292
BspCNI	CTCAG	4 cut(s)	120, 901, 915, 1183
BspDI	ATCGAT	1 cut(s)	1245
BspLI	GGNNCC	1 cut(s)	936
BspMI	ACCTGC	1 cut(s)	444
BspPI	GGATC	2 cut(s)	398, 1042
BspT104I	TTCGAA	1 cut(s)	499
BspTI	CTTAAG	2 cut(s)	677, 1145
BsrDI	GCAATG	1 cut(s)	981
BsrI	ACTGG	3 cut(s)	290, 859, 1320
BssECI	CCNNGG	2 cut(s)	272, 1363
BssMI	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
BssT1I	CCWWGG	1 cut(s)	272
Bst2UI	CCWGG	2 cut(s)	529, 1201
Bst4CI	ACNGT	1 cut(s)	386
BstAFI	CTTAAG	2 cut(s)	677, 1145
BstBI	TTCGAA	1 cut(s)	499
BstC8I	GCNNGC	4 cut(s)	89, 628, 810, 1335
BstDEI	CTNAG	6 cut(s)	128, 325, 813, 888, 902, 1191
BstHHI	GCGC	1 cut(s)	1263
BstKTI	GATC	5 cut(s)	393, 1029, 1037, 1249, 1278
BstMAI	GTCTC	3 cut(s)	206, 737, 965
BstMBI	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
BstNI	CCWGG	2 cut(s)	529, 1201
BstNSI	RCATGY	3 cut(s)	39, 619, 1337
BstSCI	CCNGG	2 cut(s)	527, 1199
BstV1I	GCAGC	1 cut(s)	78
BstV2I	GAAGAC	2 cut(s)	259, 837
BstX2I	RGATCY	1 cut(s)	1034
BstYI	RGATCY	1 cut(s)	1034
Bsu15I	ATCGAT	1 cut(s)	1245
BsuI	GTATCC	1 cut(s)	1079
BsuTUI	ATCGAT	1 cut(s)	1245
BtsIMutI	CAGTG	2 cut(s)	1145, 1177
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	4 cut(s)	89, 628, 810, 1335
CfoI	GCGC	1 cut(s)	1263
Cfr13I	GGNCC	2 cut(s)	910, 934
ClaI	ATCGAT	1 cut(s)	1245
Csp6I	GTAC	3 cut(s)	150, 416, 1204
CviAII	CATG	5 cut(s)	36, 519, 616, 1184, 1334
CviQI	GTAC	3 cut(s)	150, 416, 1204
DdeI	CTNAG	6 cut(s)	128, 325, 813, 888, 902, 1191
DpnI	GATC	5 cut(s)	392, 1028, 1036, 1248, 1277
DpnII	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
DraI	TTTAAA	1 cut(s)	1057
Eco130I	CCWWGG	1 cut(s)	272
Eco32I	GATATC	2 cut(s)	726, 819
Eco47I	GGWCC	2 cut(s)	910, 934
Eco57I	CTGAAG	1 cut(s)	671
Eco88I	CYCGRG	1 cut(s)	962
EcoRII	CCWGG	2 cut(s)	527, 1199
EcoRV	GATATC	2 cut(s)	726, 819
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	5 cut(s)	39, 522, 619, 1187, 1337
FaqI	GGGAC	2 cut(s)	330, 920
FatI	CATG	5 cut(s)	35, 518, 615, 1183, 1333
Fnu4HI	GCNGC	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	6 cut(s)	107, 273, 567, 575, 914, 957
GlaI	GCGC	1 cut(s)	1262
GluI	GCNGC	1 cut(s)	92
GsuI	CTGGAG	4 cut(s)	761, 876, 1289, 1337
HhaI	GCGC	1 cut(s)	1263
Hin1II	CATG	5 cut(s)	39, 522, 619, 1187, 1337
Hin6I	GCGC	1 cut(s)	1261
HinP1I	GCGC	1 cut(s)	1261
HincII	GTYRAC	1 cut(s)	1299
HindII	GTYRAC	1 cut(s)	1299
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	7 cut(s)	25, 292, 365, 490, 845, 898, 1253
HphI	GGTGA	4 cut(s)	301, 530, 674, 1382
Hpy166II	GTNNAC	2 cut(s)	572, 1299
Hpy188I	TCNGA	5 cut(s)	376, 634, 690, 1098, 1367
Hpy188III	TCNNGA	7 cut(s)	485, 608, 740, 947, 962, 1250, 1268
Hpy8I	GTNNAC	2 cut(s)	572, 1299
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	4 cut(s)	6, 695, 1016, 1065
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	2 cut(s)	794, 1288
HpyCH4V	TGCA	7 cut(s)	81, 156, 304, 310, 439, 800, 1048
HpyF3I	CTNAG	6 cut(s)	128, 325, 813, 888, 902, 1191
HpySE526I	ACGT	2 cut(s)	794, 1288
Hsp92II	CATG	5 cut(s)	39, 522, 619, 1187, 1337
HspAI	GCGC	1 cut(s)	1261
Kzo9I	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
LmnI	GCTCC	2 cut(s)	463, 736
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	3 cut(s)	165, 319, 1102
MaeI	CTAG	6 cut(s)	107, 273, 567, 575, 914, 957
MaeII	ACGT	2 cut(s)	794, 1288
MaeIII	GTNAC	2 cut(s)	790, 895
MalI	GATC	5 cut(s)	392, 1028, 1036, 1248, 1277
MboI	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
MboII	GAAGA	9 cut(s)	250, 264, 339, 342, 421, 656, 842, 875, 1001
MfeI	CAATTG	2 cut(s)	305, 866
MflI	RGATCY	1 cut(s)	1034
MhlI	GDGCHC	1 cut(s)	585
MlyI	GAGTC	4 cut(s)	19, 839, 892, 1247
MmeI	TCCRAC	1 cut(s)	368
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	1294
MspCI	CTTAAG	2 cut(s)	677, 1145
MspR9I	CCNGG	2 cut(s)	529, 1201
MunI	CAATTG	2 cut(s)	305, 866
Mva1269I	GAATGC	1 cut(s)	1263
MvaI	CCWGG	2 cut(s)	529, 1201
NdeII	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
NlaIII	CATG	5 cut(s)	39, 522, 619, 1187, 1337
NlaIV	GGNNCC	1 cut(s)	936
NmuCI	GTSAC	2 cut(s)	790, 895
NspI	RCATGY	3 cut(s)	39, 619, 1337
NspV	TTCGAA	1 cut(s)	499
PacI	TTAATTAA	1 cut(s)	1212
PaeI	GCATGC	1 cut(s)	1337
PaeR7I	CTCGAG	1 cut(s)	962
PciI	ACATGT	2 cut(s)	35, 615
PctI	GAATGC	1 cut(s)	1263
PfeI	GAWTC	3 cut(s)	292, 365, 490
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	4 cut(s)	19, 839, 892, 1247
PpsI	GAGTC	4 cut(s)	19, 839, 892, 1247
PscI	ACATGT	2 cut(s)	35, 615
PshBI	ATTAAT	2 cut(s)	993, 1238
PsiI	TTATAA	1 cut(s)	1387
Psp6I	CCWGG	2 cut(s)	527, 1199
PspGI	CCWGG	2 cut(s)	527, 1199
PspN4I	GGNNCC	1 cut(s)	936
PspPI	GGNCC	2 cut(s)	910, 934
PsuI	RGATCY	1 cut(s)	1034
RsaI	GTAC	3 cut(s)	151, 417, 1205
RsaNI	GTAC	3 cut(s)	150, 416, 1204
RseI	CAYNNNNRTG	1 cut(s)	86
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
Sau96I	GGNCC	2 cut(s)	910, 934
ScaI	AGTACT	1 cut(s)	151
SchI	GAGTC	4 cut(s)	19, 839, 892, 1247
ScrFI	CCNGG	2 cut(s)	529, 1201
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	3 cut(s)	165, 319, 1102
Sfr274I	CTCGAG	1 cut(s)	962
SfuI	TTCGAA	1 cut(s)	499
SinI	GGWCC	2 cut(s)	910, 934
SlaI	CTCGAG	1 cut(s)	962
SmiI	ATTTAAAT	1 cut(s)	1057
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	4 cut(s)	677, 719, 962, 1145
SmoI	CTYRAG	4 cut(s)	677, 719, 962, 1145
SpeI	ACTAGT	3 cut(s)	566, 574, 956
SphI	GCATGC	1 cut(s)	1337
SsiI	CCGC	1 cut(s)	1292
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	6 cut(s)	107, 273, 567, 575, 914, 957
StyD4I	CCNGG	2 cut(s)	527, 1199
StyI	CCWWGG	1 cut(s)	272
SwaI	ATTTAAAT	1 cut(s)	1057
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	2 cut(s)	797, 1291
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	3 cut(s)	292, 365, 490
TscAI	CASTG	2 cut(s)	1145, 1177
TseFI	GTSAC	2 cut(s)	790, 895
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	2 cut(s)	790, 895
TspDTI	ATGAA	4 cut(s)	234, 507, 577, 1200
TspGWI	ACGGA	2 cut(s)	450, 774
TspRI	CASTG	2 cut(s)	1145, 1177
Vha464I	CTTAAG	2 cut(s)	677, 1145
VpaK11BI	GGWCC	2 cut(s)	910, 934
VspI	ATTAAT	2 cut(s)	993, 1238
XapI	RAATTY	2 cut(s)	941, 1354
XceI	RCATGY	3 cut(s)	39, 619, 1337
XhoI	CTCGAG	1 cut(s)	962
XmaJI	CCTAGG	1 cut(s)	272
XspI	CTAG	6 cut(s)	107, 273, 567, 575, 914, 957
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.