Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Reverse (-)

41150120 .. 41150849

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G496300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCCGAAAAGAAAGGCTAAGCATTCTGGATGGACATATGGGAAACGACAAAAGATTCCAATCAATTTGGGTGATAAGGAAGATAATTATTCGGAGGAGGATCAGATCAGTCAGCTACCAGATGTCATTCTAATTAGCATTCTTTCCTTATTGGGTATCAGGGAAGCAGCAAGAACTCGTGTCCTCTCTAAGAGGTGGATCTGTGTGTGGAAACAGATTACTTGTCTCAACTTCGATGATATAGATGCATTATCCAAACCACAGAAGAAAAGAAGGCAACGAGTGAAAACAACATCTAGTTACAATTGGGTGAATCAAGTCTTGCAATTGCACCAGGGTCCATCCTTAGATGAATTCAAAATTCGTTCTTCCTCACTCGATTACAGTCCTAGTAGTTCTGAAATCGACAATTGGATTGAATTTGCAATGTGGAGGAGAGTTCAAGGCCTTGAGATAGATTTGGAAGCAGGCAGACGGTCTCGTTTTTCTTCTCCCAGTTATATCTTTCCAGATAAGCCATTTAGAAGCCCTTTTGGTATTTCCTGCATCAAGTCCCTTAAACACCTCTCTTTGTCCTTTGTAAATATAACCGGCGAACTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

202

Amino Acids

23.27

Weight (kDa)

9.65

Isoelectric Point (pI)

69.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	108, 206
AcsI	RAATTY	3 cut(s)	353, 360, 419
AgsI	TTSAA	3 cut(s)	358, 419, 443
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	230, 483
AlwI	GGATC	2 cut(s)	108, 206
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	3 cut(s)	353, 360, 419
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	83, 322
AvaII	GGWCC	1 cut(s)	338
BauI	CACGAG	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	2 cut(s)	24, 349
BciT130I	CCWGG	1 cut(s)	335
BcoDI	GTCTC	2 cut(s)	230, 483
BfaI	CTAG	2 cut(s)	297, 390
BisI	GCNGC	1 cut(s)	168
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	335
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	2 cut(s)	235, 555
BmuI	ACTGGG	1 cut(s)	489
Bpu1102I	GCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	470
BsaBI	GATNNNNATC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	334
Bse118I	RCCGGY	1 cut(s)	590
Bse1I	ACTGG	1 cut(s)	495
Bse3DI	GCAATG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	35, 341
BseJI	GATNNNNATC	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	2 cut(s)	110, 448
BseXI	GCAGC	1 cut(s)	179
BshFI	GGCC	1 cut(s)	447
BsiSI	CCGG	1 cut(s)	591
BslFI	GGGAC	1 cut(s)	538
BsmAI	GTCTC	2 cut(s)	230, 483
BsmFI	GGGAC	1 cut(s)	538
BsmI	GAATGC	2 cut(s)	22, 138
BsnI	GGCC	1 cut(s)	447
Bso31I	GGTCTC	1 cut(s)	483
Bsp143I	GATC	3 cut(s)	100, 105, 198
Bsp1720I	GCTNAGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	2 cut(s)	108, 206
BspTNI	GGTCTC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	590
BsrI	ACTGG	1 cut(s)	495
BssAI	RCCGGY	1 cut(s)	590
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	3 cut(s)	100, 105, 198
BssSI	CACGAG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	2 cut(s)	386, 477
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	3 cut(s)	18, 189, 346
BstF5I	GGATG	2 cut(s)	35, 341
BstKTI	GATC	3 cut(s)	103, 108, 201
BstMAI	GTCTC	2 cut(s)	230, 483
BstMBI	GATC	3 cut(s)	100, 105, 198
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	35, 341
Cac8I	GCNNGC	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	590
Cfr13I	GGNCC	1 cut(s)	338
CviJI	RGCY	5 cut(s)	17, 115, 447, 517, 528
CviKI_1	RGCY	5 cut(s)	17, 115, 447, 517, 528
DdeI	CTNAG	3 cut(s)	18, 189, 346
DpnI	GATC	3 cut(s)	102, 107, 200
DpnII	GATC	3 cut(s)	100, 105, 198
Eco147I	AGGCCT	1 cut(s)	447
Eco31I	GGTCTC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	250
FaiI	YATR	5 cut(s)	37, 39, 242, 501, 587
FaqI	GGGAC	1 cut(s)	538
FauNDI	CATATG	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	2 cut(s)	42, 328
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	2 cut(s)	297, 390
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	1 cut(s)	591
HinfI	GANTC	2 cut(s)	55, 313
HpaII	CCGG	1 cut(s)	591
HphI	GGTGA	2 cut(s)	83, 322
Hpy188I	TCNGA	3 cut(s)	94, 105, 400
Hpy188III	TCNNGA	2 cut(s)	27, 509
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	2 cut(s)	386, 477
HpyCH4V	TGCA	5 cut(s)	248, 325, 331, 425, 546
HpyF3I	CTNAG	3 cut(s)	18, 189, 346
Kzo9I	GATC	3 cut(s)	100, 105, 198
LpnPI	CCDG	9 cut(s)	12, 132, 145, 320, 347, 453, 508, 522, 556
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	2 cut(s)	235, 555
MaeI	CTAG	2 cut(s)	297, 390
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	3 cut(s)	102, 107, 200
MboI	GATC	3 cut(s)	100, 105, 198
MboII	GAAGA	4 cut(s)	92, 277, 360, 480
MfeI	CAATTG	3 cut(s)	304, 326, 409
MflI	RGATCY	1 cut(s)	198
MluCI	AATT	9 cut(s)	64, 85, 132, 304, 326, 353, 360, 409, 419
MnlI	CCTC	7 cut(s)	88, 91, 186, 194, 382, 426, 575
Mph1103I	ATGCAT	1 cut(s)	250
MseI	TTAA	1 cut(s)	558
MspI	CCGG	1 cut(s)	591
MspR9I	CCNGG	1 cut(s)	335
MunI	CAATTG	3 cut(s)	304, 326, 409
Mva1269I	GAATGC	2 cut(s)	22, 138
MvaI	CCWGG	1 cut(s)	335
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	3 cut(s)	100, 105, 198
NlaIV	GGNNCC	1 cut(s)	339
NsiI	ATGCAT	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	447
PctI	GAATGC	2 cut(s)	22, 138
PfeI	GAWTC	2 cut(s)	55, 313
PkrI	GCNGC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	3 cut(s)	100, 105, 198
Sau96I	GGNCC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	335
SetI	ASST	3 cut(s)	117, 197, 567
SfaNI	GCATC	2 cut(s)	235, 555
SinI	GGWCC	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	9 cut(s)	64, 85, 132, 304, 326, 353, 360, 409, 419
SseBI	AGGCCT	1 cut(s)	447
SspMI	CTAG	2 cut(s)	297, 390
StuI	AGGCCT	1 cut(s)	447
StyD4I	CCNGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	386, 477
TaqI	TCGA	3 cut(s)	234, 378, 405
TasI	AATT	9 cut(s)	64, 85, 132, 304, 326, 353, 360, 409, 419
TfiI	GAWTC	2 cut(s)	55, 313
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	3 cut(s)	353, 360, 419
XspI	CTAG	2 cut(s)	297, 390
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.