Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025718.1

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Reverse (-)

4450 .. 7073

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025718.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggaattgatgttttgggtggcatcggcttggtggtccggcgtcttctccgctacgctacagaagactggcatcgacgcgcagaggtctctcggccgagttgctgacatcagccacgatctggaactgttgtcgagctatcaaccggcgagcttgggtcaagaaattggtcaggggcttggcctttttcttggcctcggtcacttctccactggtggaagccattttttctccatgtcggtcaccacctcacctttgcccagctggagaccggtcaagagggatttatttggaggtcctggtaatgactgcatagttttccctaagttcctcaaacacctttctttgagctacgtaaacatagagggttatcttgttgagcagtttctatccaactgtcaatttcgtgaacacctctgtgtgtctggctcggtgtatttagaagatttgagggttgttggttcatcactccagttgaagttcctgcagattagtgactgtccttggttagaaaaggttgagatttttgctcctaatcttgtgtcattgtctattacggagtgtgggactggggcgagttgtggtgatgctaggtgtggtggcgggatcatggcagagcaggcgcggcatggtcggcagagcaaagctggaaatggtttcgcaggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

222

Amino Acids

24.03

Weight (kDa)

6.05

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	121
AccII	CGCG	2 cut(s)	80, 625
AciI	CCGC	3 cut(s)	51, 603, 625
AclWI	GGATC	1 cut(s)	614
AcoI	YGGCCR	1 cut(s)	94
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgeI	ACCGGT	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	298
AleI	CACNNNNGTG	1 cut(s)	417
AluBI	AGCT	5 cut(s)	138, 153, 264, 351, 647
AluI	AGCT	5 cut(s)	138, 153, 264, 351, 647
Alw26I	GTCTC	2 cut(s)	93, 262
AlwI	GGATC	1 cut(s)	614
AoxI	GGCC	3 cut(s)	94, 181, 193
AsiGI	ACCGGT	1 cut(s)	271
AspLEI	GCGC	2 cut(s)	82, 625
AspS9I	GGNCC	2 cut(s)	36, 296
AsuHPI	GGTGA	3 cut(s)	235, 243, 596
AvaII	GGWCC	2 cut(s)	36, 296
BbsI	GAAGAC	2 cut(s)	37, 71
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	93, 262
BfaI	CTAG	2 cut(s)	591, 667
BfmI	CTRYAG	2 cut(s)	59, 485
BisI	GCNGC	1 cut(s)	626
BlsI	GCNGC	1 cut(s)	627
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	2 cut(s)	36, 296
BmgT120I	GGNCC	2 cut(s)	36, 296
BmrFI	CCNGG	1 cut(s)	300
BmrI	ACTGGG	1 cut(s)	579
BmsI	GCATC	3 cut(s)	32, 81, 577
BmuI	ACTGGG	1 cut(s)	579
BpiI	GAAGAC	2 cut(s)	37, 71
BpmI	CTGGAG	2 cut(s)	286, 455
BsaAI	YACGTR	1 cut(s)	355
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	2 cut(s)	93, 262
BsaJI	CCNNGG	2 cut(s)	196, 503
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse118I	RCCGGY	2 cut(s)	145, 271
Bse1I	ACTGG	4 cut(s)	73, 217, 472, 574
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	196, 503
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseNI	ACTGG	4 cut(s)	73, 217, 472, 574
BseX3I	CGGCCG	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	260
Bsh1236I	CGCG	2 cut(s)	80, 625
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	3 cut(s)	96, 183, 195
BshTI	ACCGGT	1 cut(s)	271
BsiEI	CGRYCG	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	39, 146, 272
BslFI	GGGAC	1 cut(s)	580
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	93, 262
BsmFI	GGGAC	1 cut(s)	580
BsnI	GGCC	3 cut(s)	96, 183, 195
Bso31I	GGTCTC	2 cut(s)	93, 262
Bsp143I	GATC	2 cut(s)	118, 606
BspACI	CCGC	3 cut(s)	51, 603, 625
BspANI	GGCC	3 cut(s)	96, 183, 195
BspFNI	CGCG	2 cut(s)	80, 625
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	1 cut(s)	614
BspTNI	GGTCTC	2 cut(s)	93, 262
BsrFI	RCCGGY	2 cut(s)	145, 271
BsrI	ACTGG	4 cut(s)	73, 217, 472, 574
BssAI	RCCGGY	2 cut(s)	145, 271
BssECI	CCNNGG	2 cut(s)	196, 503
BssMI	GATC	2 cut(s)	118, 606
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	503
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	129, 398, 500
BstACI	GRCGYC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	355
BstC8I	GCNNGC	3 cut(s)	151, 621, 664
BstDEI	CTNAG	1 cut(s)	324
BstEII	GGTNACC	1 cut(s)	241
BstFNI	CGCG	2 cut(s)	80, 625
BstHHI	GCGC	2 cut(s)	82, 625
BstKTI	GATC	2 cut(s)	121, 609
BstMAI	GTCTC	2 cut(s)	93, 262
BstMBI	GATC	2 cut(s)	118, 606
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	3 cut(s)	620, 625, 634
BstNI	CCWGG	1 cut(s)	300
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	2 cut(s)	59, 485
BstSNI	TACGTA	1 cut(s)	355
BstUI	CGCG	2 cut(s)	80, 625
BstV2I	GAAGAC	2 cut(s)	37, 71
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	3 cut(s)	96, 183, 195
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	151, 621, 664
CfoI	GCGC	2 cut(s)	82, 625
Cfr10I	RCCGGY	2 cut(s)	145, 271
Cfr13I	GGNCC	2 cut(s)	36, 296
CseI	GACGC	2 cut(s)	31, 86
CspAI	ACCGGT	1 cut(s)	271
CviAII	CATG	3 cut(s)	235, 610, 629
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	2 cut(s)	120, 608
DpnII	GATC	2 cut(s)	118, 606
EaeI	YGGCCR	1 cut(s)	94
EagI	CGGCCG	1 cut(s)	94
EclXI	CGGCCG	1 cut(s)	94
Eco105I	TACGTA	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	503
Eco31I	GGTCTC	2 cut(s)	93, 262
Eco47I	GGWCC	2 cut(s)	36, 296
Eco52I	CGGCCG	1 cut(s)	94
Eco91I	GGTNACC	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	503
FaeI	CATG	3 cut(s)	238, 613, 632
FaiI	YATR	5 cut(s)	236, 314, 362, 611, 630
FaqI	GGGAC	1 cut(s)	580
FatI	CATG	3 cut(s)	234, 609, 628
FauI	CCCGC	1 cut(s)	596
Fnu4HI	GCNGC	1 cut(s)	626
Fsp4HI	GCNGC	1 cut(s)	626
FspBI	CTAG	2 cut(s)	591, 667
GlaI	GCGC	2 cut(s)	81, 624
GluI	GCNGC	1 cut(s)	626
GsaI	CCCAGC	1 cut(s)	264
GsuI	CTGGAG	2 cut(s)	286, 455
HaeIII	GGCC	3 cut(s)	96, 183, 195
HapII	CCGG	3 cut(s)	39, 146, 272
HgaI	GACGC	2 cut(s)	31, 86
HhaI	GCGC	2 cut(s)	82, 625
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	238, 613, 632
Hin6I	GCGC	2 cut(s)	80, 623
HinP1I	GCGC	2 cut(s)	80, 623
HpaII	CCGG	3 cut(s)	39, 146, 272
HphI	GGTGA	3 cut(s)	235, 243, 596
Hpy166II	GTNNAC	2 cut(s)	358, 410
Hpy188III	TCNNGA	4 cut(s)	122, 161, 277, 407
Hpy8I	GTNNAC	2 cut(s)	358, 410
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4III	ACNGT	3 cut(s)	129, 398, 500
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	2 cut(s)	312, 487
HpyF10VI	GCNNNNNNNGC	3 cut(s)	620, 625, 634
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	238, 613, 632
HspAI	GCGC	2 cut(s)	80, 623
Kzo9I	GATC	2 cut(s)	118, 606
LmnI	GCTCC	1 cut(s)	535
LweI	GCATC	3 cut(s)	32, 81, 577
MaeI	CTAG	2 cut(s)	591, 667
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	3 cut(s)	200, 241, 494
MalI	GATC	2 cut(s)	120, 608
MboI	GATC	2 cut(s)	118, 606
MboII	GAAGA	3 cut(s)	37, 76, 455
MluCI	AATT	3 cut(s)	5, 165, 401
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	9 cut(s)	78, 206, 259, 273, 287, 341, 358, 425, 444
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	3 cut(s)	39, 146, 272
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	2 cut(s)	80, 625
MwoI	GCNNNNNNNGC	3 cut(s)	620, 625, 634
NdeII	GATC	2 cut(s)	118, 606
NlaIII	CATG	3 cut(s)	238, 613, 632
NmeAIII	GCCGAG	2 cut(s)	72, 122
NmuCI	GTSAC	3 cut(s)	200, 241, 494
OliI	CACNNNNGTG	1 cut(s)	417
PflMI	CCANNNNNTGG	1 cut(s)	121
PinAI	ACCGGT	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	627
Ppu21I	YACGTR	1 cut(s)	355
PpuMI	RGGWCCY	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	298
PspEI	GGTNACC	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	298
PspPI	GGNCC	2 cut(s)	36, 296
PspPPI	RGGWCCY	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	489
PvuII	CAGCTG	1 cut(s)	264
RseI	CAYNNNNRTG	1 cut(s)	417
SatI	GCNGC	1 cut(s)	626
Sau3AI	GATC	2 cut(s)	118, 606
Sau96I	GGNCC	2 cut(s)	36, 296
ScrFI	CCNGG	1 cut(s)	300
SfaNI	GCATC	3 cut(s)	32, 81, 577
SfcI	CTRYAG	2 cut(s)	59, 485
SinI	GGWCC	2 cut(s)	36, 296
SmiMI	CAYNNNNRTG	1 cut(s)	417
SnaBI	TACGTA	1 cut(s)	355
Sse9I	AATT	3 cut(s)	5, 165, 401
SsiI	CCGC	3 cut(s)	51, 603, 625
SspMI	CTAG	2 cut(s)	591, 667
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	503
TaaI	ACNGT	3 cut(s)	129, 398, 500
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	2 cut(s)	75, 134
TaqII	GACCGA	2 cut(s)	188, 229
TasI	AATT	3 cut(s)	5, 165, 401
TauI	GCSGC	1 cut(s)	628
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	3 cut(s)	200, 241, 494
Tsp45I	GTSAC	3 cut(s)	200, 241, 494
TspDTI	ATGAA	1 cut(s)	453
TspGWI	ACGGA	1 cut(s)	572
TspRI	CASTG	1 cut(s)	217
Van91I	CCANNNNNTGG	1 cut(s)	121
VpaK11BI	GGWCC	2 cut(s)	36, 296
XspI	CTAG	2 cut(s)	591, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.