Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Reverse (-)

41135457 .. 41137300

Gene Structure 1844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G495900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGCCGAAAAGAAAGGCTGAGCATTCTGGATGGACATACAGGAAACAACAAAAGATTCCAATCAATTTGGGTGATAAGGAAGAGAATTATTCAGAGGACGATCAGATCAGTCAGCTACCAGATGCCATTCTAATTAGCATTCTTTCCCTATTGGGTATTAGGGAAGCAGCAAGGACTTGTGTCCTCTCGAAGAGGTGGGTCTCTCTGTGGAAACAGATTACGTGTCTCAACTTCGATGATATAGATGCATTATCCAAACTGCAGAAGAAAAGAAAACGAGTGAAAACAACATCTAGTTACAATTGGGTGAATCAAGTCTTGCAATTGCACCAGGGTCTATCCTTAGATGAATTCCAAATTCATTCTTCCTCACCCGATTCCAGTCCTAGTAGTTCTGAAATCGACAATTGGATTGAATTTGCAATGTGGAGGAGAGTTCAAGGCCTTGAGATAGATTTGGAAGCAGGCAGACGGTCTCGTTTTTCTTCTCCCAGTTATACCTTTCCAGATAAGCCATTTAGAAGCCCTTTTGGTATTTCCTGCATCAAGTCCCTTAAACACCTCTCTTTGTCCTTTGTAAATATAACCGGCGAACTTGTTGAACATTTTCTATCCTATTGTGAACTCCTTGAGCATCTCTGCGTTTCTTGCTCAGATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

221

Amino Acids

25.34

Weight (kDa)

7.63

Isoelectric Point (pI)

63.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	350, 357, 416
AflIII	ACRYGT	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	416, 440, 602
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw26I	GTCTC	3 cut(s)	205, 230, 480
AoxI	GGCC	1 cut(s)	442
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	3 cut(s)	350, 357, 416
Asp700I	GAANNNNTTC	1 cut(s)	606
AsuHPI	GGTGA	3 cut(s)	83, 319, 363
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	3 cut(s)	205, 230, 480
BfaI	CTAG	2 cut(s)	294, 387
BfmI	CTRYAG	1 cut(s)	260
BisI	GCNGC	1 cut(s)	168
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	332
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	4 cut(s)	112, 235, 552, 643
BmuI	ACTGGG	1 cut(s)	486
BoxI	GACNNNNGTC	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	2 cut(s)	467, 650
BsaAI	YACGTR	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	59
BsaI	GGTCTC	2 cut(s)	205, 480
BsaJI	CCNNGG	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	587
Bse1I	ACTGG	2 cut(s)	381, 492
Bse3DI	GCAATG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	1 cut(s)	35
BseJI	GATNNNNATC	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	2 cut(s)	381, 492
BseRI	GAGGAG	1 cut(s)	445
BseXI	GCAGC	1 cut(s)	179
BshFI	GGCC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	588
BslFI	GGGAC	1 cut(s)	535
BsmAI	GTCTC	3 cut(s)	205, 230, 480
BsmFI	GGGAC	1 cut(s)	535
BsmI	GAATGC	2 cut(s)	22, 138
BsnI	GGCC	1 cut(s)	444
Bso31I	GGTCTC	2 cut(s)	205, 480
Bsp143I	GATC	3 cut(s)	100, 105, 655
Bsp1720I	GCTNAGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	264
BspTNI	GGTCTC	2 cut(s)	205, 480
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	587
BsrI	ACTGG	2 cut(s)	381, 492
BssAI	RCCGGY	1 cut(s)	587
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	3 cut(s)	100, 105, 655
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	474
Bst6I	CTCTTC	2 cut(s)	75, 185
BstBAI	YACGTR	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	3 cut(s)	18, 343, 652
BstF5I	GGATG	1 cut(s)	35
BstKTI	GATC	3 cut(s)	103, 108, 658
BstMAI	GTCTC	3 cut(s)	205, 230, 480
BstMBI	GATC	3 cut(s)	100, 105, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	648
BstNI	CCWGG	1 cut(s)	332
BstPAI	GACNNNNGTC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	466
Cfr10I	RCCGGY	1 cut(s)	587
CviJI	RGCY	5 cut(s)	17, 115, 444, 514, 525
CviKI_1	RGCY	5 cut(s)	17, 115, 444, 514, 525
DdeI	CTNAG	3 cut(s)	18, 343, 652
DpnI	GATC	3 cut(s)	102, 107, 657
DpnII	GATC	3 cut(s)	100, 105, 655
Eam1104I	CTCTTC	2 cut(s)	75, 185
EarI	CTCTTC	2 cut(s)	75, 185
Eco147I	AGGCCT	1 cut(s)	444
Eco31I	GGTCTC	2 cut(s)	205, 480
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	250
FaiI	YATR	4 cut(s)	37, 242, 498, 584
FaqI	GGGAC	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	2 cut(s)	294, 387
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	444
HapII	CCGG	1 cut(s)	588
HinfI	GANTC	3 cut(s)	55, 310, 377
HpaII	CCGG	1 cut(s)	588
HphI	GGTGA	3 cut(s)	83, 319, 363
Hpy166II	GTNNAC	1 cut(s)	623
Hpy188I	TCNGA	4 cut(s)	94, 105, 397, 655
Hpy188III	TCNNGA	3 cut(s)	27, 187, 506
Hpy8I	GTNNAC	1 cut(s)	623
HpyCH4III	ACNGT	1 cut(s)	474
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	6 cut(s)	248, 262, 322, 328, 422, 543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	648
HpyF3I	CTNAG	3 cut(s)	18, 343, 652
HpySE526I	ACGT	1 cut(s)	221
Kzo9I	GATC	3 cut(s)	100, 105, 655
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	4 cut(s)	112, 235, 552, 643
MaeI	CTAG	2 cut(s)	294, 387
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	3 cut(s)	102, 107, 657
MboI	GATC	3 cut(s)	100, 105, 655
MboII	GAAGA	5 cut(s)	92, 202, 277, 357, 477
MfeI	CAATTG	3 cut(s)	301, 323, 406
MluCI	AATT	9 cut(s)	64, 85, 132, 301, 323, 350, 357, 406, 416
MnlI	CCTC	6 cut(s)	88, 186, 194, 379, 423, 572
Mph1103I	ATGCAT	1 cut(s)	250
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	1 cut(s)	555
MspI	CCGG	1 cut(s)	588
MspR9I	CCNGG	1 cut(s)	332
MunI	CAATTG	3 cut(s)	301, 323, 406
Mva1269I	GAATGC	2 cut(s)	22, 138
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	648
NdeII	GATC	3 cut(s)	100, 105, 655
NsiI	ATGCAT	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	444
PctI	GAATGC	2 cut(s)	22, 138
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	3 cut(s)	55, 310, 377
PkrI	GCNGC	1 cut(s)	169
Ppu21I	YACGTR	1 cut(s)	222
PshAI	GACNNNNGTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PstI	CTGCAG	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	3 cut(s)	100, 105, 655
ScrFI	CCNGG	1 cut(s)	332
SetI	ASST	5 cut(s)	117, 197, 224, 503, 564
SfaNI	GCATC	4 cut(s)	112, 235, 552, 643
SfcI	CTRYAG	1 cut(s)	260
SmlI	CTYRAG	2 cut(s)	446, 629
SmoI	CTYRAG	2 cut(s)	446, 629
Sse9I	AATT	9 cut(s)	64, 85, 132, 301, 323, 350, 357, 406, 416
SseBI	AGGCCT	1 cut(s)	444
SspMI	CTAG	2 cut(s)	294, 387
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	474
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	3 cut(s)	188, 234, 402
TasI	AATT	9 cut(s)	64, 85, 132, 301, 323, 350, 357, 406, 416
TfiI	GAWTC	3 cut(s)	55, 310, 377
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	350, 363
XapI	RAATTY	3 cut(s)	350, 357, 416
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	2 cut(s)	294, 387
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.