Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Reverse (-)

41148842 .. 41149939

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G496200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTTGGGTTTCTGTGACAGTATTCGTTTGAGGCATGCACCCTTGCTTGTTAATGTATCTCTTGCAGAAAGTACTAGGTCCATAATTGCACCTTTTCTTTCGGTTAAAAGTTGTATTCCTCAGCTGCCAGTTATATCTTTCCAGATAAGCCATTTAGAAGCCCTTTCGGCGTTTCCTGCATCAAAAAGTACTAGGTCTATAGTTCCAACTTTTCTTCCGGTTAAAAGTTGTCTTCCTCAGCTGGTGACTCTCAATCTCAACTTGGACATGAATCTGAATATGAGTGCAATGGTGAGGCACCCAGAATTTCCAGAATTAACTTGTCTCAAGGACTTAACATTGAATGTTGTCGCAAGTGATCGGCAAAGCCTCCTTAATTTGACTAAATTGATAGAGCGGTCTCCTTTCTTGCATAGATGTACATTGGATCTAAGATGGGCACGAGTGCCATGTCTGAGGAATTTGCAGAAGGTTAATAAATGTCCTCATCAGTGCCTTAAGGTGGTGAAATTTTCTGGGTTCGTTGGGTCTAGTATCGACACTGAGCTTGCCATGTACTTCTCTGAGAATGCCGTTGCGCTTGAAACGTTTATCGTCGATCTCAGAAAGGTTGTCGTTGAAGAATCCACTCTATTGTCTGAATTTGTTACAACCCAGAAACAACTGAGGGCAGCAAGAAAGCGTGCTTTGCAGATAGGTAAAAAACTACCTCCAGGAGCTGAGTTAATTGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

246

Amino Acids

27.35

Weight (kDa)

9.42

Isoelectric Point (pI)

61.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	297
AccBSI	CCGCTC	1 cut(s)	397
AciI	CCGC	1 cut(s)	397
AclI	AACGTT	1 cut(s)	587
AclWI	GGATC	1 cut(s)	435
AcsI	RAATTY	4 cut(s)	305, 460, 509, 641
AfaI	GTAC	4 cut(s)	73, 190, 421, 557
AfiI	CCNNNNNNNGG	1 cut(s)	502
AflII	CTTAAG	1 cut(s)	497
AgsI	TTSAA	3 cut(s)	343, 584, 620
AjnI	CCWGG	1 cut(s)	712
AluBI	AGCT	4 cut(s)	124, 241, 547, 719
AluI	AGCT	4 cut(s)	124, 241, 547, 719
Alw26I	GTCTC	2 cut(s)	329, 405
AlwI	GGATC	1 cut(s)	435
AlwNI	CAGNNNCTG	1 cut(s)	719
ApeKI	GCWGC	2 cut(s)	124, 671
ApoI	RAATTY	4 cut(s)	305, 460, 509, 641
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	3 cut(s)	256, 304, 517
AvaII	GGWCC	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	297
BauI	CACGAG	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	224
BbvCI	CCTCAGC	2 cut(s)	120, 237
BbvI	GCAGC	2 cut(s)	111, 683
BccI	CCATC	1 cut(s)	429
BceAI	ACGGC	1 cut(s)	557
BciT130I	CCWGG	1 cut(s)	714
BcoDI	GTCTC	2 cut(s)	329, 405
BfaI	CTAG	3 cut(s)	75, 192, 531
BfmI	CTRYAG	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	497
BglI	GCCNNNNNGGC	1 cut(s)	167
BisI	GCNGC	2 cut(s)	125, 672
BlsI	GCNGC	2 cut(s)	126, 673
BmcAI	AGTACT	2 cut(s)	73, 190
Bme1390I	CCNGG	1 cut(s)	714
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	299
BmrFI	CCNGG	1 cut(s)	714
BmsI	GCATC	1 cut(s)	188
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	696
Bpu10I	CCTNAGC	2 cut(s)	120, 237
BpuEI	CTTGAG	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	405
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse1I	ACTGG	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	714
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	8 cut(s)	134, 251, 446, 534, 555, 616, 656, 711
BseNI	ACTGG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	2 cut(s)	111, 683
BshNI	GGYRCC	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	2 cut(s)	329, 405
BsmI	GAATGC	1 cut(s)	574
Bso31I	GGTCTC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp1407I	TGTACA	1 cut(s)	419
Bsp143I	GATC	3 cut(s)	358, 427, 598
BspACI	CCGC	1 cut(s)	397
BspCNI	CTCAG	8 cut(s)	133, 250, 447, 535, 556, 615, 657, 712
BspLI	GGNNCC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	435
BspT107I	GGYRCC	1 cut(s)	297
BspTI	CTTAAG	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	405
BsrBI	CCGCTC	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	294
BsrGI	TGTACA	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	128
BssMI	GATC	3 cut(s)	358, 427, 598
BssSI	CACGAG	1 cut(s)	441
Bst2BI	CACGAG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	419
BstC8I	GCNNGC	3 cut(s)	36, 549, 684
BstDEI	CTNAG	9 cut(s)	120, 237, 431, 455, 543, 564, 602, 665, 720
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	3 cut(s)	361, 430, 601
BstMAI	GTCTC	2 cut(s)	329, 405
BstMBI	GATC	3 cut(s)	358, 427, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 176, 688
BstNI	CCWGG	1 cut(s)	714
BstNSI	RCATGY	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	712
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	442
BstV1I	GCAGC	2 cut(s)	111, 683
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BtsIMutI	CAGTG	2 cut(s)	497, 540
Cac8I	GCNNGC	3 cut(s)	36, 549, 684
CaiI	CAGNNNCTG	1 cut(s)	719
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	4 cut(s)	72, 189, 420, 556
CviAII	CATG	4 cut(s)	35, 268, 450, 553
CviJI	RGCY	7 cut(s)	124, 150, 161, 241, 369, 547, 719
CviKI_1	RGCY	7 cut(s)	124, 150, 161, 241, 369, 547, 719
CviQI	GTAC	4 cut(s)	72, 189, 420, 556
DdeI	CTNAG	9 cut(s)	120, 237, 431, 455, 543, 564, 602, 665, 720
DpnI	GATC	3 cut(s)	360, 429, 600
DpnII	GATC	3 cut(s)	358, 427, 598
Eco31I	GGTCTC	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	712
FaeI	CATG	4 cut(s)	38, 271, 453, 556
FaiI	YATR	9 cut(s)	36, 83, 134, 200, 269, 281, 414, 451, 554
FatI	CATG	4 cut(s)	34, 267, 449, 552
Fnu4HI	GCNGC	2 cut(s)	125, 672
Fsp4HI	GCNGC	2 cut(s)	125, 672
FspBI	CTAG	3 cut(s)	75, 192, 531
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	2 cut(s)	125, 672
GsuI	CTGGAG	1 cut(s)	696
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	4 cut(s)	38, 271, 453, 556
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HinfI	GANTC	3 cut(s)	247, 271, 623
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	3 cut(s)	256, 304, 517
Hpy188I	TCNGA	5 cut(s)	276, 456, 565, 605, 640
Hpy188III	TCNNGA	2 cut(s)	142, 311
Hpy99I	CGWCG	1 cut(s)	599
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	587
HpyCH4V	TGCA	8 cut(s)	38, 65, 89, 179, 287, 412, 466, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 176, 688
HpyF3I	CTNAG	9 cut(s)	120, 237, 431, 455, 543, 564, 602, 665, 720
HpySE526I	ACGT	1 cut(s)	587
Hsp92II	CATG	4 cut(s)	38, 271, 453, 556
HspAI	GCGC	1 cut(s)	578
Kzo9I	GATC	3 cut(s)	358, 427, 598
LmnI	GCTCC	1 cut(s)	716
Lsp1109I	GCAGC	2 cut(s)	111, 683
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	3 cut(s)	75, 192, 531
MaeII	ACGT	1 cut(s)	587
MaeIII	GTNAC	3 cut(s)	14, 244, 646
MalI	GATC	3 cut(s)	360, 429, 600
MbiI	CCGCTC	1 cut(s)	397
MboI	GATC	3 cut(s)	358, 427, 598
MboII	GAAGA	3 cut(s)	206, 224, 632
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	9 cut(s)	84, 305, 314, 376, 386, 460, 509, 641, 726
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	9 cut(s)	24, 129, 246, 288, 380, 450, 495, 660, 720
MseI	TTAA	9 cut(s)	51, 105, 222, 317, 335, 375, 474, 498, 725
MspA1I	CMGCKG	2 cut(s)	124, 241
MspCI	CTTAAG	1 cut(s)	497
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	714
Mva1269I	GAATGC	1 cut(s)	574
MvaI	CCWGG	1 cut(s)	714
MwoI	GCNNNNNNNGC	3 cut(s)	167, 176, 688
NdeII	GATC	3 cut(s)	358, 427, 598
NlaIII	CATG	4 cut(s)	38, 271, 453, 556
NlaIV	GGNNCC	1 cut(s)	299
NmuCI	GTSAC	2 cut(s)	14, 244
NspI	RCATGY	1 cut(s)	38
PaeI	GCATGC	1 cut(s)	38
PctI	GAATGC	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	271, 623
PfoI	TCCNGGA	1 cut(s)	712
PkrI	GCNGC	2 cut(s)	126, 673
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Psp1406I	AACGTT	1 cut(s)	587
Psp6I	CCWGG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	1 cut(s)	299
PspPI	GGNCC	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	719
PsuI	RGATCY	1 cut(s)	427
PvuII	CAGCTG	2 cut(s)	124, 241
RsaI	GTAC	4 cut(s)	73, 190, 421, 557
RsaNI	GTAC	4 cut(s)	72, 189, 420, 556
SaqAI	TTAA	9 cut(s)	51, 105, 222, 317, 335, 375, 474, 498, 725
SatI	GCNGC	2 cut(s)	125, 672
Sau3AI	GATC	3 cut(s)	358, 427, 598
Sau96I	GGNCC	1 cut(s)	78
ScaI	AGTACT	2 cut(s)	73, 190
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	714
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	1 cut(s)	188
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	78
SmlI	CTYRAG	2 cut(s)	326, 497
SmoI	CTYRAG	2 cut(s)	326, 497
SphI	GCATGC	1 cut(s)	38
Sse9I	AATT	9 cut(s)	84, 305, 314, 376, 386, 460, 509, 641, 726
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	3 cut(s)	75, 192, 531
StyD4I	CCNGG	1 cut(s)	712
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	590
TaqI	TCGA	2 cut(s)	537, 597
TasI	AATT	9 cut(s)	84, 305, 314, 376, 386, 460, 509, 641, 726
TatI	WGTACW	4 cut(s)	71, 188, 419, 555
TfiI	GAWTC	2 cut(s)	271, 623
Tru1I	TTAA	9 cut(s)	51, 105, 222, 317, 335, 375, 474, 498, 725
Tru9I	TTAA	9 cut(s)	51, 105, 222, 317, 335, 375, 474, 498, 725
TscAI	CASTG	2 cut(s)	497, 547
TseFI	GTSAC	2 cut(s)	14, 244
TseI	GCWGC	2 cut(s)	124, 671
Tsp45I	GTSAC	2 cut(s)	14, 244
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	2 cut(s)	497, 547
Vha464I	CTTAAG	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	4 cut(s)	305, 460, 509, 641
XceI	RCATGY	1 cut(s)	38
XspI	CTAG	3 cut(s)	75, 192, 531
ZrmI	AGTACT	2 cut(s)	73, 190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.