Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Reverse (-)

41138767 .. 41141421

Gene Structure 2655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G496000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCCGAAAAGAAAGGCTAAGCATTCTGGATGGACATATGGGAAACGACAAAAGATTCCAATCAATTTGGTTGATAAGGAAGAGAATTATTCGGAGGAGGATCAGATCAGTCAGCTACCGGATGTCATTCTAATCAGCATTCTTTCCCTATTGGGTATTAGGGATGCAGCAAGAACTTGTGTCCTCTCTAAGAGGTGGATCTATGTGTGGAAACAGATTACATGTCTCAACTTCGATGATATAGATGCATTATCCAAACCACAGAAGAAAAGAAGGCAACGAGTGAAAACAACATCTAGTTACAATTGGGTGAATCAAGTCTTGCAATTGCACCATGGTCCATCCTTAGATGAATTCAAAATTCGTTCTTCCTCACTCAATTGCAGTCCTAGTAGTTCTGAAATCGACAATTGGATTGAATTTGCAATGTGGAGGAGAGTTCAAGGCCTTGAGATAGATTTGGAAGCAGGCAGACGGTCTCGTTTTTCTTCTCCCAGTTATATCTTTCCAGATAAGCCATTTAGAAGCCCTTTTGGTATTTCCTGCATCAAGTCCCTTAAACACCTCTCTTTGTCCTTTGTAAATATAACCGGCGAACTTGTTGAGCACTTTCTATCCTACTGTGAACTCCTTGAGCATCTCTGCATTTCTTGCTCAGATCAATTAGTAAAATTGAAAGTTGCTGGTTCATCACTCCGGTTGAAGTTCCTACAAATAAGTGAGTGTACGTCTTTAGGATTAGTTGAGATTTGGGCTCCTAATCTCGTGTCATTTATTTATAAGGGAATGTTGGGTTATTGTGACAGTATTCGATTGAGGCATGCACCCTTGCTTGTTAATGTATCTCTTGCAGAAAGTACTAGGTCTATAATTGAACCTTTTCTTTCGGTTAAAAGTTGCATTCCTCAGCTGGTGACTCTCAATCGTCATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

312

Amino Acids

35.66

Weight (kDa)

9.26

Isoelectric Point (pI)

61.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	780
AclWI	GGATC	2 cut(s)	108, 206
AcsI	RAATTY	3 cut(s)	353, 360, 419
AfaI	GTAC	2 cut(s)	727, 859
AflIII	ACRYGT	1 cut(s)	221
AgsI	TTSAA	6 cut(s)	358, 419, 443, 676, 703, 875
AluBI	AGCT	2 cut(s)	115, 910
AluI	AGCT	2 cut(s)	115, 910
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	2 cut(s)	230, 483
AlwI	GGATC	2 cut(s)	108, 206
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	3 cut(s)	353, 360, 419
Asp700I	GAANNNNTTC	1 cut(s)	879
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	322, 925
AvaII	GGWCC	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	757
BauI	CACGAG	1 cut(s)	764
Bbv12I	GWGCWC	1 cut(s)	609
BbvCI	CCTCAGC	1 cut(s)	906
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	2 cut(s)	24, 349
BcoDI	GTCTC	2 cut(s)	230, 483
BfaI	CTAG	3 cut(s)	297, 390, 861
BisI	GCNGC	1 cut(s)	168
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	169
BmcAI	AGTACT	1 cut(s)	859
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	756
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	4 cut(s)	154, 235, 555, 646
BmuI	ACTGGG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	906
Bpu1102I	GCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	2 cut(s)	470, 653
BsaBI	GATNNNNATC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	334
BsaWI	WCCGGW	2 cut(s)	118, 696
Bse118I	RCCGGY	1 cut(s)	590
Bse1I	ACTGG	1 cut(s)	495
Bse3DI	GCAATG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	4 cut(s)	35, 127, 169, 341
BseJI	GATNNNNATC	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	669, 920
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	2 cut(s)	110, 448
BseXI	GCAGC	1 cut(s)	179
BshFI	GGCC	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	609
BsiSI	CCGG	3 cut(s)	119, 591, 697
BslFI	GGGAC	1 cut(s)	538
BsmAI	GTCTC	2 cut(s)	230, 483
BsmFI	GGGAC	1 cut(s)	538
BsmI	GAATGC	3 cut(s)	22, 138, 900
BsnI	GGCC	1 cut(s)	447
Bso31I	GGTCTC	1 cut(s)	483
Bsp1286I	GDGCHC	2 cut(s)	609, 757
Bsp143I	GATC	4 cut(s)	100, 105, 198, 658
Bsp1720I	GCTNAGC	1 cut(s)	18
Bsp19I	CCATGG	1 cut(s)	334
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	2 cut(s)	668, 919
BspLI	GGNNCC	1 cut(s)	756
BspPI	GGATC	2 cut(s)	108, 206
BspTNI	GGTCTC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	590
BsrI	ACTGG	1 cut(s)	495
BssAI	RCCGGY	1 cut(s)	590
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	4 cut(s)	100, 105, 198, 658
BssSI	CACGAG	1 cut(s)	764
BssT1I	CCWWGG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	764
Bst4CI	ACNGT	3 cut(s)	477, 623, 806
Bst6I	CTCTTC	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	651
BstC8I	GCNNGC	2 cut(s)	469, 822
BstDEI	CTNAG	5 cut(s)	18, 189, 346, 655, 906
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	4 cut(s)	35, 127, 169, 341
BstKTI	GATC	4 cut(s)	103, 108, 201, 661
BstMAI	GTCTC	2 cut(s)	230, 483
BstMBI	GATC	4 cut(s)	100, 105, 198, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	651
BstNSI	RCATGY	2 cut(s)	225, 824
BstV1I	GCAGC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	4 cut(s)	35, 127, 169, 341
Cac8I	GCNNGC	2 cut(s)	469, 822
Cfr10I	RCCGGY	1 cut(s)	590
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	726, 858
CviAII	CATG	3 cut(s)	222, 335, 821
CviJI	RGCY	7 cut(s)	17, 115, 447, 517, 528, 755, 910
CviKI_1	RGCY	7 cut(s)	17, 115, 447, 517, 528, 755, 910
CviQI	GTAC	2 cut(s)	726, 858
DdeI	CTNAG	5 cut(s)	18, 189, 346, 655, 906
DpnI	GATC	4 cut(s)	102, 107, 200, 660
DpnII	GATC	4 cut(s)	100, 105, 198, 658
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	334
Eco147I	AGGCCT	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	757
Eco31I	GGTCTC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	757
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	3 cut(s)	225, 338, 824
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	3 cut(s)	221, 334, 820
FauNDI	CATATG	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	4 cut(s)	42, 134, 176, 328
FriOI	GRGCYC	1 cut(s)	757
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	3 cut(s)	297, 390, 861
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	3 cut(s)	119, 591, 697
Hin1II	CATG	3 cut(s)	225, 338, 824
HinfI	GANTC	3 cut(s)	55, 313, 916
HpaII	CCGG	3 cut(s)	119, 591, 697
HphI	GGTGA	2 cut(s)	322, 925
Hpy166II	GTNNAC	2 cut(s)	626, 726
Hpy188I	TCNGA	4 cut(s)	94, 105, 400, 658
Hpy188III	TCNNGA	2 cut(s)	27, 509
Hpy8I	GTNNAC	2 cut(s)	626, 726
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	3 cut(s)	477, 623, 806
HpyCH4IV	ACGT	1 cut(s)	728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	651
HpyF3I	CTNAG	5 cut(s)	18, 189, 346, 655, 906
HpySE526I	ACGT	1 cut(s)	728
Hsp92II	CATG	3 cut(s)	225, 338, 824
Kzo9I	GATC	4 cut(s)	100, 105, 198, 658
LmnI	GCTCC	1 cut(s)	760
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	4 cut(s)	154, 235, 555, 646
MaeI	CTAG	3 cut(s)	297, 390, 861
MaeII	ACGT	1 cut(s)	728
MaeIII	GTNAC	3 cut(s)	299, 800, 913
MalI	GATC	4 cut(s)	102, 107, 200, 660
MboI	GATC	4 cut(s)	100, 105, 198, 658
MboII	GAAGA	4 cut(s)	92, 277, 360, 480
MfeI	CAATTG	4 cut(s)	304, 326, 379, 409
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	2 cut(s)	609, 757
MlyI	GAGTC	1 cut(s)	910
MnlI	CCTC	9 cut(s)	88, 91, 186, 194, 382, 426, 575, 810, 915
Mph1103I	ATGCAT	1 cut(s)	250
MroXI	GAANNNNTTC	1 cut(s)	879
MseI	TTAA	3 cut(s)	558, 837, 891
MspA1I	CMGCKG	1 cut(s)	910
MspI	CCGG	3 cut(s)	119, 591, 697
MunI	CAATTG	4 cut(s)	304, 326, 379, 409
Mva1269I	GAATGC	3 cut(s)	22, 138, 900
MwoI	GCNNNNNNNGC	1 cut(s)	651
NcoI	CCATGG	1 cut(s)	334
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	4 cut(s)	100, 105, 198, 658
NlaIII	CATG	3 cut(s)	225, 338, 824
NlaIV	GGNNCC	1 cut(s)	756
NmuCI	GTSAC	2 cut(s)	800, 913
NsiI	ATGCAT	1 cut(s)	250
NspI	RCATGY	2 cut(s)	225, 824
PaeI	GCATGC	1 cut(s)	824
PceI	AGGCCT	1 cut(s)	447
PciI	ACATGT	1 cut(s)	221
PctI	GAATGC	3 cut(s)	22, 138, 900
PdmI	GAANNNNTTC	1 cut(s)	879
PfeI	GAWTC	2 cut(s)	55, 313
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	1 cut(s)	910
PpsI	GAGTC	1 cut(s)	910
PscI	ACATGT	1 cut(s)	221
PsiI	TTATAA	1 cut(s)	780
PspN4I	GGNNCC	1 cut(s)	756
PspPI	GGNCC	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	910
RsaI	GTAC	2 cut(s)	727, 859
RsaNI	GTAC	2 cut(s)	726, 858
SaqAI	TTAA	3 cut(s)	558, 837, 891
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	4 cut(s)	100, 105, 198, 658
Sau96I	GGNCC	1 cut(s)	338
ScaI	AGTACT	1 cut(s)	859
SchI	GAGTC	1 cut(s)	910
SduI	GDGCHC	2 cut(s)	609, 757
SetI	ASST	7 cut(s)	117, 197, 567, 731, 866, 880, 912
SfaNI	GCATC	4 cut(s)	154, 235, 555, 646
SinI	GGWCC	1 cut(s)	338
SmlI	CTYRAG	2 cut(s)	449, 632
SmoI	CTYRAG	2 cut(s)	449, 632
SphI	GCATGC	1 cut(s)	824
SseBI	AGGCCT	1 cut(s)	447
SspMI	CTAG	3 cut(s)	297, 390, 861
StuI	AGGCCT	1 cut(s)	447
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	3 cut(s)	477, 623, 806
TaiI	ACGT	1 cut(s)	731
TaqI	TCGA	3 cut(s)	234, 405, 811
TatI	WGTACW	1 cut(s)	857
TfiI	GAWTC	2 cut(s)	55, 313
Tru1I	TTAA	3 cut(s)	558, 837, 891
Tru9I	TTAA	3 cut(s)	558, 837, 891
TseFI	GTSAC	2 cut(s)	800, 913
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	2 cut(s)	800, 913
TspDTI	ATGAA	2 cut(s)	366, 678
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	3 cut(s)	353, 360, 419
XceI	RCATGY	2 cut(s)	225, 824
XmnI	GAANNNNTTC	1 cut(s)	879
XspI	CTAG	3 cut(s)	297, 390, 861
ZrmI	AGTACT	1 cut(s)	859
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.