Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Forward (+)

26325777 .. 26327165

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00305670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGCAAAAAGAAGGGGTAAGAGGACTCAATCTACATGTGGAAAACAAAACAAACATCCAATCAATTTGGAACAGGATTGCATTAGCGTGCTGCCCGATGAAGTTCTAGTCCTCATTCTTTCCCTACTGAGTATTAAGGAAGCAGTAAGTACTTGCATCTTGTCTAAAAGGTGGAAAAATGTGTGGAAACAAATTACTTGTCTCAACTTCTTTTTAGATGAATTATCTAAAACAGAGAAGATAAAAATAGGAAGACAAGTAGTTGAAATACCTAGGACATACAACTGGGTGAATCAAGTCTTGCAATTGCATCAGGGTCAACTCTTAGATGAGTTCAAACTTTGTTCTTCTTCAATAGATTGCGATTCGACTTCTGAAATCGACAGTTGGATCGAATTGGTAATACAGAAGAAAGTACGAAAGTTTGAGATAGACCTGCAAGGAGATAGAGGTGTAGCTCCGTATTGTTCCCATTATACATTTCCAGAGAATCTATTTCGAAACCCTTTTGGTGTTTCATGGTTTTCCTGGCTTACACACCTTTCTTTGAACTATGTGAATATAACTAGTGAACTAGTCGAGCACTTCATATTAAACTGCCAACTTCTCGAACACCTGTTTATTGCTGGCTCGGAGTATTTAGAAGATTTGAAAGTTGTTGGTGAGTTGCTTCGGCTTAAGTTCCTTCAGATATGTGATTGCCTTAACTTATTTCAGCTTGAGATATCTGCTCCTTGTCTGGAGACATTCTTTTATGACGGAGAATGTCGCTATAACATCAATATTCGTGTGACGTATGCACCCTTGCTTGCTAAGATATGTATAACAGAAGACTTTCTGTTTGACTCTACAACTGGAGATTTTCAATTGTTTTGGAATTATCTTCCTCAGTTAGTGACTCTCAGGTTGGTCCTAGAGAAAGAGCCAAAGTTGGTCCCTGAATTTCCAGAATTAACTAGTCTTGAGTTCTTATCATTGAGCATTGCCAGAATTAATAGGCGAAGCCTTCTTCTTTTGACTTCTTTGATCGAGGGATCTCCTTGCTTGCATAGATTTAAATTAAGGTTGAGAAGGAGTTTGATGGGATGCAGGCATCGGAGAAGCAAAATAATTAGTGAGGCGAATACAAGTCCTCATCAGTGCCTTAAGGTGGTCGAACTTTCTGGGTTCAGTGGGTCGAAACATGAAACTGAGGTTGCCAGGTACTTAATTAAGAAAGCTGTTGCGCTTAAAAAATTAATTATCGATCTGGACTCGAAGCGCATTCTGGAGGAGATCAACCCTTTACGTCCGCTGTCAACCAAAATCAAAGAACTGGAGATGGCAAGAAAGCATGCTTTACAGCTTGAAAAAAAATTACCCCTCGGTGGTGAGTTAATCATTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

462

Amino Acids

53.44

Weight (kDa)

8.58

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	28 - 64	6.3e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	100 - 420	1.6e-23	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	174 - 271	5e-08	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	380 - 415	1.4e-08	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1387
Acc36I	ACCTGC	1 cut(s)	444
AciI	CCGC	1 cut(s)	1292
AclWI	GGATC	2 cut(s)	398, 1042
AcsI	RAATTY	1 cut(s)	941
AcuI	CTGAAG	1 cut(s)	671
AfaI	GTAC	3 cut(s)	151, 417, 1205
AfiI	CCNNNNNNNGG	2 cut(s)	1150, 1367
AflII	CTTAAG	2 cut(s)	677, 1145
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	7 cut(s)	266, 337, 354, 550, 652, 866, 1349
AhlI	ACTAGT	3 cut(s)	566, 574, 956
AjnI	CCWGG	2 cut(s)	527, 1199
AluBI	AGCT	4 cut(s)	458, 718, 1220, 1345
AluI	AGCT	4 cut(s)	458, 718, 1220, 1345
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	2 cut(s)	206, 737
AlwI	GGATC	2 cut(s)	398, 1042
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	941
ArsI	GACNNNNNNTTYG	4 cut(s)	184, 216, 824, 856
AseI	ATTAAT	2 cut(s)	993, 1238
Asp700I	GAANNNNTTC	1 cut(s)	834
AspA2I	CCTAGG	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	1228, 1263
AspS9I	GGNCC	2 cut(s)	910, 934
AsuHPI	GGTGA	3 cut(s)	301, 674, 1382
AsuII	TTCGAA	1 cut(s)	499
AvaII	GGWCC	2 cut(s)	910, 934
AvrII	CCTAGG	1 cut(s)	272
BbsI	GAAGAC	2 cut(s)	259, 837
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	2 cut(s)	1075, 1315
BciT130I	CCWGG	2 cut(s)	529, 1201
BcoDI	GTCTC	2 cut(s)	206, 737
BcuI	ACTAGT	3 cut(s)	566, 574, 956
BfaI	CTAG	6 cut(s)	107, 273, 567, 575, 914, 957
BfrI	CTTAAG	2 cut(s)	677, 1145
BfuAI	ACCTGC	1 cut(s)	444
BisI	GCNGC	1 cut(s)	92
BlnI	CCTAGG	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	93
BmcAI	AGTACT	1 cut(s)	151
Bme1390I	CCNGG	2 cut(s)	529, 1201
Bme18I	GGWCC	2 cut(s)	910, 934
BmgT120I	GGNCC	2 cut(s)	910, 934
BmiI	GGNNCC	1 cut(s)	936
BmrFI	CCNGG	2 cut(s)	529, 1201
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	4 cut(s)	165, 319, 1076, 1102
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	2 cut(s)	259, 837
BpmI	CTGGAG	4 cut(s)	761, 876, 1289, 1337
Bpu14I	TTCGAA	1 cut(s)	499
BpuEI	CTTGAG	2 cut(s)	740, 983
Bsa29I	ATCGAT	1 cut(s)	1245
BsaJI	CCNNGG	2 cut(s)	272, 1363
Bsc4I	CCNNNNNNNGG	2 cut(s)	1150, 1367
Bse1I	ACTGG	3 cut(s)	290, 859, 1320
Bse3DI	GCAATG	1 cut(s)	981
BseBI	CCWGG	2 cut(s)	529, 1201
BseCI	ATCGAT	1 cut(s)	1245
BseDI	CCNNGG	2 cut(s)	272, 1363
BseGI	GGATG	2 cut(s)	55, 1091
BseLI	CCNNNNNNNGG	2 cut(s)	1150, 1367
BseMI	GCAATG	1 cut(s)	981
BseMII	CTCAG	4 cut(s)	119, 902, 916, 1182
BseNI	ACTGG	3 cut(s)	290, 859, 1320
BseRI	GAGGAG	1 cut(s)	1286
BseXI	GCAGC	1 cut(s)	78
BshVI	ATCGAT	1 cut(s)	1245
BsiHKAI	GWGCWC	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	920
BslI	CCNNNNNNNGG	2 cut(s)	1150, 1367
BsmAI	GTCTC	2 cut(s)	206, 737
BsmFI	GGGAC	1 cut(s)	920
BsmI	GAATGC	1 cut(s)	1263
Bsp119I	TTCGAA	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
BspACI	CCGC	1 cut(s)	1292
BspCNI	CTCAG	4 cut(s)	120, 901, 915, 1183
BspDI	ATCGAT	1 cut(s)	1245
BspLI	GGNNCC	1 cut(s)	936
BspMI	ACCTGC	1 cut(s)	444
BspPI	GGATC	2 cut(s)	398, 1042
BspT104I	TTCGAA	1 cut(s)	499
BspTI	CTTAAG	2 cut(s)	677, 1145
BsrDI	GCAATG	1 cut(s)	981
BsrI	ACTGG	3 cut(s)	290, 859, 1320
BssECI	CCNNGG	2 cut(s)	272, 1363
BssMI	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
BssT1I	CCWWGG	1 cut(s)	272
Bst2UI	CCWGG	2 cut(s)	529, 1201
Bst4CI	ACNGT	1 cut(s)	386
BstAFI	CTTAAG	2 cut(s)	677, 1145
BstBI	TTCGAA	1 cut(s)	499
BstC8I	GCNNGC	6 cut(s)	89, 628, 810, 1046, 1091, 1335
BstDEI	CTNAG	6 cut(s)	128, 325, 813, 888, 902, 1191
BstF5I	GGATG	2 cut(s)	55, 1091
BstHHI	GCGC	2 cut(s)	1228, 1263
BstKTI	GATC	5 cut(s)	393, 1029, 1037, 1249, 1278
BstMAI	GTCTC	2 cut(s)	206, 737
BstMBI	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
BstNI	CCWGG	2 cut(s)	529, 1201
BstNSI	RCATGY	2 cut(s)	39, 1337
BstSCI	CCNGG	2 cut(s)	527, 1199
BstV1I	GCAGC	1 cut(s)	78
BstV2I	GAAGAC	2 cut(s)	259, 837
BstX2I	RGATCY	1 cut(s)	1034
BstYI	RGATCY	1 cut(s)	1034
Bsu15I	ATCGAT	1 cut(s)	1245
BsuTUI	ATCGAT	1 cut(s)	1245
BtsCI	GGATG	2 cut(s)	55, 1091
BtsIMutI	CAGTG	2 cut(s)	1145, 1177
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	6 cut(s)	89, 628, 810, 1046, 1091, 1335
CfoI	GCGC	2 cut(s)	1228, 1263
Cfr13I	GGNCC	2 cut(s)	910, 934
ClaI	ATCGAT	1 cut(s)	1245
Csp6I	GTAC	3 cut(s)	150, 416, 1204
CviAII	CATG	4 cut(s)	36, 519, 1184, 1334
CviJI	RGCY	9 cut(s)	458, 532, 630, 676, 718, 925, 1005, 1220, 1345
CviKI_1	RGCY	9 cut(s)	458, 532, 630, 676, 718, 925, 1005, 1220, 1345
CviQI	GTAC	3 cut(s)	150, 416, 1204
DdeI	CTNAG	6 cut(s)	128, 325, 813, 888, 902, 1191
DpnI	GATC	5 cut(s)	392, 1028, 1036, 1248, 1277
DpnII	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
DraI	TTTAAA	1 cut(s)	1057
Eco130I	CCWWGG	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	726
Eco47I	GGWCC	2 cut(s)	910, 934
Eco57I	CTGAAG	1 cut(s)	671
EcoRII	CCWGG	2 cut(s)	527, 1199
EcoRV	GATATC	1 cut(s)	726
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	4 cut(s)	39, 522, 1187, 1337
FaqI	GGGAC	1 cut(s)	920
FatI	CATG	4 cut(s)	35, 518, 1183, 1333
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	2 cut(s)	42, 1098
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	6 cut(s)	107, 273, 567, 575, 914, 957
GlaI	GCGC	2 cut(s)	1227, 1262
GluI	GCNGC	1 cut(s)	92
GsuI	CTGGAG	4 cut(s)	761, 876, 1289, 1337
HhaI	GCGC	2 cut(s)	1228, 1263
Hin1II	CATG	4 cut(s)	39, 522, 1187, 1337
Hin6I	GCGC	2 cut(s)	1226, 1261
HinP1I	GCGC	2 cut(s)	1226, 1261
HincII	GTYRAC	2 cut(s)	320, 1299
HindII	GTYRAC	2 cut(s)	320, 1299
HinfI	GANTC	7 cut(s)	25, 292, 365, 490, 845, 898, 1253
HphI	GGTGA	3 cut(s)	301, 674, 1382
Hpy166II	GTNNAC	3 cut(s)	320, 572, 1299
Hpy188I	TCNGA	4 cut(s)	376, 634, 690, 1098
Hpy188III	TCNNGA	7 cut(s)	485, 608, 740, 947, 962, 1250, 1268
Hpy8I	GTNNAC	3 cut(s)	320, 572, 1299
HpyAV	CCTTC	4 cut(s)	6, 695, 1016, 1065
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	2 cut(s)	794, 1288
HpyCH4V	TGCA	8 cut(s)	81, 156, 304, 310, 439, 800, 1048, 1089
HpyF3I	CTNAG	6 cut(s)	128, 325, 813, 888, 902, 1191
HpySE526I	ACGT	2 cut(s)	794, 1288
Hsp92II	CATG	4 cut(s)	39, 522, 1187, 1337
HspAI	GCGC	2 cut(s)	1226, 1261
Kzo9I	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
LmnI	GCTCC	2 cut(s)	463, 736
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	4 cut(s)	165, 319, 1076, 1102
MaeI	CTAG	6 cut(s)	107, 273, 567, 575, 914, 957
MaeII	ACGT	2 cut(s)	794, 1288
MaeIII	GTNAC	2 cut(s)	790, 895
MalI	GATC	5 cut(s)	392, 1028, 1036, 1248, 1277
MboI	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
MboII	GAAGA	9 cut(s)	250, 264, 339, 342, 421, 656, 842, 875, 1001
MfeI	CAATTG	2 cut(s)	305, 866
MflI	RGATCY	1 cut(s)	1034
MhlI	GDGCHC	1 cut(s)	585
MlyI	GAGTC	4 cut(s)	19, 839, 892, 1247
MmeI	TCCRAC	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	834
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	1294
MspCI	CTTAAG	2 cut(s)	677, 1145
MspR9I	CCNGG	2 cut(s)	529, 1201
MunI	CAATTG	2 cut(s)	305, 866
Mva1269I	GAATGC	1 cut(s)	1263
MvaI	CCWGG	2 cut(s)	529, 1201
NdeII	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
NlaIII	CATG	4 cut(s)	39, 522, 1187, 1337
NlaIV	GGNNCC	1 cut(s)	936
NmuCI	GTSAC	2 cut(s)	790, 895
NspI	RCATGY	2 cut(s)	39, 1337
NspV	TTCGAA	1 cut(s)	499
PacI	TTAATTAA	1 cut(s)	1212
PaeI	GCATGC	1 cut(s)	1337
PciI	ACATGT	1 cut(s)	35
PctI	GAATGC	1 cut(s)	1263
PdmI	GAANNNNTTC	1 cut(s)	834
PfeI	GAWTC	3 cut(s)	292, 365, 490
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	4 cut(s)	19, 839, 892, 1247
PpsI	GAGTC	4 cut(s)	19, 839, 892, 1247
PscI	ACATGT	1 cut(s)	35
PshBI	ATTAAT	2 cut(s)	993, 1238
PsiI	TTATAA	1 cut(s)	1387
Psp6I	CCWGG	2 cut(s)	527, 1199
PspGI	CCWGG	2 cut(s)	527, 1199
PspN4I	GGNNCC	1 cut(s)	936
PspPI	GGNCC	2 cut(s)	910, 934
PsuI	RGATCY	1 cut(s)	1034
RsaI	GTAC	3 cut(s)	151, 417, 1205
RsaNI	GTAC	3 cut(s)	150, 416, 1204
RseI	CAYNNNNRTG	1 cut(s)	86
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	5 cut(s)	390, 1026, 1034, 1246, 1275
Sau96I	GGNCC	2 cut(s)	910, 934
ScaI	AGTACT	1 cut(s)	151
SchI	GAGTC	4 cut(s)	19, 839, 892, 1247
ScrFI	CCNGG	2 cut(s)	529, 1201
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	4 cut(s)	165, 319, 1076, 1102
SfuI	TTCGAA	1 cut(s)	499
SinI	GGWCC	2 cut(s)	910, 934
SmiI	ATTTAAAT	1 cut(s)	1057
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	4 cut(s)	677, 719, 962, 1145
SmoI	CTYRAG	4 cut(s)	677, 719, 962, 1145
SpeI	ACTAGT	3 cut(s)	566, 574, 956
SphI	GCATGC	1 cut(s)	1337
SsiI	CCGC	1 cut(s)	1292
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	6 cut(s)	107, 273, 567, 575, 914, 957
StyD4I	CCNGG	2 cut(s)	527, 1199
StyI	CCWWGG	1 cut(s)	272
SwaI	ATTTAAAT	1 cut(s)	1057
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	2 cut(s)	797, 1291
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	3 cut(s)	292, 365, 490
TscAI	CASTG	2 cut(s)	1145, 1177
TseFI	GTSAC	2 cut(s)	790, 895
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	2 cut(s)	790, 895
TspDTI	ATGAA	5 cut(s)	114, 234, 507, 577, 1200
TspGWI	ACGGA	2 cut(s)	450, 774
TspRI	CASTG	2 cut(s)	1145, 1177
Vha464I	CTTAAG	2 cut(s)	677, 1145
VpaK11BI	GGWCC	2 cut(s)	910, 934
VspI	ATTAAT	2 cut(s)	993, 1238
XapI	RAATTY	1 cut(s)	941
XceI	RCATGY	2 cut(s)	39, 1337
XmaJI	CCTAGG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	834
XspI	CTAG	6 cut(s)	107, 273, 567, 575, 914, 957
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.